"""Brute-force retrievers and shared GPU kernels. Two retrieval families share one streaming-top-k template — different inner score kernel, same outer machinery (resident query stripe, double-buffered H2D candidate tiles, pre-allocated FP32 similarity buffer): - **Dense** — cosine top-k over an `(N, dim)` FP16 corpus. Inner kernel is one FP16 matmul into a pre-allocated FP32 ``out=`` buffer. - **MaxSim** — ColBERT-style late interaction over a multi-vector corpus (``(T_total, dim)`` token bank + ``(N+1,)`` section offsets). Inner kernel is matmul + segment-max over ragged doc-token offsets + segment-sum over ragged query-token offsets, via two small CUDA RawKernels. Each path exposes itself two ways: - ``gt_stripe_*`` — one-shot per-GPU stripe worker used by ``ground_truth.py`` for the all-vs-all corpus sweep. - ``DenseRetriever`` / ``MaxSimRetriever`` — consumer-facing search, corpus loaded once at construction and held resident on a single GPU. ``search()`` runs a single matmul + top-k against the resident corpus. """ from __future__ import annotations import struct import time from pathlib import Path import numpy as np from usearchwiki import ( CollectionShard, discover_collection, resolve_lfs_pointer, ) # region: Common utilities def _read_header(path: Path) -> tuple[int, int]: blob = resolve_lfs_pointer(path) with open(blob, "rb") as file: rows, columns = struct.unpack("= rows || seg >= n_segments) return; int start = offsets[seg]; int end = offsets[seg + 1]; // 64-bit offset arithmetic: with a 7.7M-section stripe and // query_tile_sections=2048, the max sliding-window query-token count // can hit ~32K; combined with max_tile_tokens ~100K, row * row_stride // exceeds INT32_MAX. The output stride is bounded by // candidate_tile_sections (≤ ~32K), so 32-bit math is fine for `out`. const float* row_ptr = values + (long long)row * (long long)row_stride; float best = -3.4e38f; for (int t = start; t < end; ++t) { float v = row_ptr[t]; if (v > best) best = v; } out[row * out_stride + seg] = best; } """ _SEGMENT_SUM_SRC = r""" extern "C" __global__ void segment_sum_2d( const float* __restrict__ values, const int* __restrict__ offsets, float* __restrict__ out, int n_segments, int n_cols, int row_stride, int out_stride, int offset_base ) { int col = blockIdx.x * blockDim.x + threadIdx.x; int seg = blockIdx.y * blockDim.y + threadIdx.y; if (seg >= n_segments || col >= n_cols) return; int start = offsets[seg] - offset_base; int end = offsets[seg + 1] - offset_base; float total = 0.0f; for (int t = start; t < end; ++t) { total += values[t * row_stride + col]; } out[seg * out_stride + col] = total; } """ _SEGMENT_MAX_KERNEL = None _SEGMENT_SUM_KERNEL = None def _segment_kernels(): """Compile and cache the two RawKernels on first use. Lazy because cupy initializes a CUDA context on import — we want that deferred until inside the worker process (post-fork). """ global _SEGMENT_MAX_KERNEL, _SEGMENT_SUM_KERNEL if _SEGMENT_MAX_KERNEL is None: import cupy _SEGMENT_MAX_KERNEL = cupy.RawKernel(_SEGMENT_MAX_SRC, "segment_max_2d") _SEGMENT_SUM_KERNEL = cupy.RawKernel(_SEGMENT_SUM_SRC, "segment_sum_2d") return _SEGMENT_MAX_KERNEL, _SEGMENT_SUM_KERNEL # endregion # region: Top-k primitives def _drop_self_match(sorted_scores, sorted_indices, query_global_ids, num_neighbors): """Drop the (up-to-one) row whose index equals the query's own global id — call after `cupy.argsort(-scores)`. Pure cupy, vectorized over rows. """ import cupy is_self = sorted_indices == query_global_ids.reshape(-1, 1) has_self = cupy.any(is_self, axis=1, keepdims=True) self_pos = cupy.argmax(is_self.astype(cupy.int32), axis=1, keepdims=True) rows = sorted_scores.shape[0] output_columns = cupy.broadcast_to( cupy.arange(num_neighbors, dtype=cupy.int32), (rows, num_neighbors) ) shift_mask = (output_columns >= self_pos) & has_self source_columns = output_columns + shift_mask.astype(cupy.int32) final_scores = cupy.take_along_axis(sorted_scores, source_columns, axis=1) final_indices = cupy.take_along_axis(sorted_indices, source_columns, axis=1) return final_indices, final_scores def _topk_merge(running_scores, running_indices, tile_scores, tile_indices, keep): """Merge a `(rows, keep)` running top-k with a `(rows, *)` tile top-k. Returns the new `(rows, keep)` top-k. Allocates new arrays — used by the dense path, where matmul size makes the per-iter alloc cost negligible. """ import cupy import torch combined_scores = cupy.concatenate([running_scores, tile_scores], axis=1) combined_indices = cupy.concatenate([running_indices, tile_indices], axis=1) combined_torch = torch.from_dlpack(combined_scores) merge_values, merge_pos = torch.topk( combined_torch, k=keep, dim=1, largest=True, sorted=False ) new_scores = cupy.from_dlpack(merge_values) new_indices = cupy.take_along_axis( combined_indices, cupy.from_dlpack(merge_pos), axis=1 ) return new_scores, new_indices def _tile_topk( similarity_view, keep, candidate_offset_global, query_count, active_count ): """Top-k inside one `(Q, M)` FP32 similarity tile, lifting local indices to global. Pads to `keep` columns when the tile is shorter than `keep`. """ import cupy import torch if active_count >= keep: sim_torch = torch.from_dlpack(similarity_view) values, local = torch.topk( sim_torch, k=keep, dim=1, largest=True, sorted=False ) return ( cupy.from_dlpack(values), cupy.from_dlpack(local).astype(cupy.int32) + cupy.int32(candidate_offset_global), ) pad = keep - active_count sub_global = cupy.arange(active_count, dtype=cupy.int32) + cupy.int32( candidate_offset_global ) indices = cupy.concatenate( [ cupy.broadcast_to(sub_global, (query_count, active_count)), cupy.full((query_count, pad), -1, dtype=cupy.int32), ], axis=1, ) scores = cupy.concatenate( [ similarity_view, cupy.full((query_count, pad), -cupy.inf, dtype=cupy.float32), ], axis=1, ) return scores, indices # endregion # region: Dense path class _DenseStripeRunner: """Per-GPU runner for the dense all-vs-all top-k sweep. Owns the resident query stripe, the double-buffered H2D candidate tiles, the pre-allocated FP32 similarity buffer, and the running top-k state. One instance per ``gt_stripe_dense()`` call. """ def __init__( self, embeddings_host, stripe_start, stripe_end, num_neighbors, query_tile_rows, candidate_tile_rows, log_prefix, ): import cupy self.embeddings_host = embeddings_host self.stripe_start = stripe_start self.stripe_end = stripe_end self.stripe_size = stripe_end - stripe_start self.num_neighbors = num_neighbors self.query_tile_rows = query_tile_rows self.candidate_tile_rows = candidate_tile_rows self.log_prefix = log_prefix self.keep = num_neighbors + 1 total_vectors, dimensions = embeddings_host.shape self.total_vectors = total_vectors self.dimensions = dimensions self.query_stripe = cupy.asarray(embeddings_host[stripe_start:stripe_end]) self.pinned_holders: list = [] self.pinned_views: list[np.ndarray] = [] for _ in range(2): pinned = cupy.cuda.alloc_pinned_memory( candidate_tile_rows * dimensions * 2 ) self.pinned_holders.append(pinned) view = np.frombuffer( pinned, dtype=np.float16, count=candidate_tile_rows * dimensions ).reshape(candidate_tile_rows, dimensions) self.pinned_views.append(view) self.candidate_buffers = [ cupy.empty((candidate_tile_rows, dimensions), dtype=cupy.float16), cupy.empty((candidate_tile_rows, dimensions), dtype=cupy.float16), ] self.similarity_buffer = cupy.empty( (query_tile_rows, candidate_tile_rows), dtype=cupy.float32 ) self.topk_scores = cupy.full( (self.stripe_size, self.keep), -cupy.inf, dtype=cupy.float32 ) self.topk_indices = cupy.full( (self.stripe_size, self.keep), -1, dtype=cupy.int32 ) self.copy_stream = cupy.cuda.Stream(non_blocking=True) self.compute_stream = cupy.cuda.Stream(non_blocking=True) self.copy_done = [cupy.cuda.Event(disable_timing=True) for _ in range(2)] self.compute_done = [cupy.cuda.Event(disable_timing=True) for _ in range(2)] self.candidate_offsets = list(range(0, total_vectors, candidate_tile_rows)) def _stage_tile(self, slot: int, tile_offset: int) -> int: count = min(self.candidate_tile_rows, self.total_vectors - tile_offset) self.copy_done[slot].synchronize() np.copyto( self.pinned_views[slot][:count], self.embeddings_host[tile_offset : tile_offset + count], ) self.copy_stream.wait_event(self.compute_done[slot]) self.candidate_buffers[slot][:count].set( self.pinned_views[slot][:count], stream=self.copy_stream ) self.copy_done[slot].record(self.copy_stream) return count def _score_microbatch( self, active_device, active_count, tile_offset, query_start, query_end ): import cupy query_count = query_end - query_start similarity_view = self.similarity_buffer[:query_count, :active_count] cupy.matmul( self.query_stripe[query_start:query_end], active_device.T, out=similarity_view, ) tile_scores, tile_indices = _tile_topk( similarity_view, self.keep, tile_offset, query_count, active_count ) new_scores, new_indices = _topk_merge( self.topk_scores[query_start:query_end], self.topk_indices[query_start:query_end], tile_scores, tile_indices, self.keep, ) self.topk_scores[query_start:query_end] = new_scores self.topk_indices[query_start:query_end] = new_indices def _maybe_log_progress(self, tile_idx: int, started: float): import cupy last = tile_idx + 1 == len(self.candidate_offsets) if (tile_idx + 1) % 32 != 0 and not last: return self.compute_stream.synchronize() cupy.get_default_memory_pool().free_all_blocks() elapsed = time.monotonic() - started done = (tile_idx + 1) * self.candidate_tile_rows rate = done / max(elapsed, 1e-3) / 1e6 print( f"{self.log_prefix}tile {tile_idx + 1}/{len(self.candidate_offsets)} " f"elapsed {elapsed:.0f}s ({rate:.2f}M cand/s)", flush=True, ) def _finalize(self) -> tuple[np.ndarray, np.ndarray]: import cupy sorted_order = cupy.argsort(-self.topk_scores, axis=1) sorted_scores = cupy.take_along_axis(self.topk_scores, sorted_order, axis=1) sorted_indices = cupy.take_along_axis(self.topk_indices, sorted_order, axis=1) query_global_ids = cupy.arange( self.stripe_start, self.stripe_end, dtype=cupy.int32 ) final_indices, final_scores = _drop_self_match( sorted_scores, sorted_indices, query_global_ids, self.num_neighbors ) return cupy.asnumpy(final_indices), cupy.asnumpy(final_scores) def run(self) -> tuple[np.ndarray, np.ndarray]: counts = [0, 0] for slot in range(min(2, len(self.candidate_offsets))): counts[slot] = self._stage_tile(slot, self.candidate_offsets[slot]) started = time.monotonic() for tile_idx, tile_offset in enumerate(self.candidate_offsets): slot = tile_idx % 2 active_count = counts[slot] active_device = self.candidate_buffers[slot][:active_count] self.compute_stream.wait_event(self.copy_done[slot]) with self.compute_stream: for query_start in range(0, self.stripe_size, self.query_tile_rows): query_end = min( query_start + self.query_tile_rows, self.stripe_size ) self._score_microbatch( active_device, active_count, tile_offset, query_start, query_end ) self.compute_done[slot].record(self.compute_stream) prefetch_idx = tile_idx + 2 if prefetch_idx < len(self.candidate_offsets): counts[slot] = self._stage_tile( slot, self.candidate_offsets[prefetch_idx] ) self._maybe_log_progress(tile_idx, started) self.compute_stream.synchronize() return self._finalize() def gt_stripe_dense( embeddings_host: np.ndarray, stripe_start: int, stripe_end: int, num_neighbors: int, query_tile_rows: int, candidate_tile_rows: int, log_prefix: str = "", ) -> tuple[np.ndarray, np.ndarray]: """Compute exact top-k for ``embeddings_host[stripe_start:stripe_end]`` against the *whole* ``embeddings_host`` corpus, with double-buffered H2D streaming of candidate tiles. Returns ``(indices, scores)`` numpy arrays of shape ``(stripe_end - stripe_start, num_neighbors)`` in i32 / f32. Caller picks the GPU via ``CUDA_VISIBLE_DEVICES``. """ return _DenseStripeRunner( embeddings_host, stripe_start, stripe_end, num_neighbors, query_tile_rows, candidate_tile_rows, log_prefix, ).run() def load_dense_corpus( model_root: Path, suffix: str, shards: list[CollectionShard] ) -> tuple[np.ndarray, int]: """Load every shard of a dense collection into one host FP16 array. Sanitizes non-finite rows (a handful of WikiVerse f16bin files contain stray NaN/Inf — see project memory). """ if not shards: raise ValueError(f"no shards under {model_root}") _, dimensions = _read_header(shards[0].path) total = sum(shard.row_count for shard in shards) embeddings = np.empty((total, dimensions), dtype=np.float16) for shard in shards: blob = resolve_lfs_pointer(shard.path) with open(blob, "rb") as file: file.seek(8) destination = embeddings[ shard.row_offset : shard.row_offset + shard.row_count ] file.readinto(memoryview(destination)) # type: ignore[arg-type] bad = ~np.isfinite(embeddings).all(axis=1) if bad.any(): embeddings[bad] = 0 return embeddings, dimensions class DenseRetriever: """Brute-force exact cosine top-k for a dense embedding collection. Loads the entire ``(N, dim)`` FP16 corpus to one GPU at construction. Each ``search()`` call runs a single matmul + top-k against the resident corpus. For ~120 GB collections (60M × 1024 FP16) the corpus does NOT fit on a single 80 GB H100 — quantize on-disk before instantiating, or use the multi-GPU ``gt_stripe_dense`` path directly. This class is designed for moderate-size collections (≤ tens of GB). """ def __init__( self, model_root: str | Path, suffix: str = "body", device_id: int = 0, ): import os os.environ["CUDA_VISIBLE_DEVICES"] = str(device_id) import cupy model_root = Path(model_root) self.model_root = model_root self.suffix = suffix self.shards = discover_collection(model_root, suffix) embeddings_host, self.dimensions = load_dense_corpus( model_root, suffix, self.shards ) self.total_vectors = embeddings_host.shape[0] # Resident on GPU — subsequent searches are bound by the matmul. self.corpus_device = cupy.asarray(embeddings_host) def search( self, query_vectors: np.ndarray, k: int = 10 ) -> tuple[np.ndarray, np.ndarray]: """``query_vectors``: ``(Q, dim)`` FP16, already L2-normalized. Returns ``(scores, indices)`` — both ``(Q, k)`` numpy arrays. """ import cupy import torch if query_vectors.ndim != 2 or query_vectors.shape[1] != self.dimensions: raise ValueError( f"queries shape {query_vectors.shape} != (?, {self.dimensions})" ) queries_dev = cupy.asarray(query_vectors.astype(np.float16, copy=False)) sim = cupy.matmul(queries_dev, self.corpus_device.T, dtype=cupy.float32) sim_torch = torch.from_dlpack(sim) values, local = torch.topk(sim_torch, k=k, dim=1, largest=True, sorted=True) return cupy.asnumpy(cupy.from_dlpack(values)), cupy.asnumpy( cupy.from_dlpack(local).astype(cupy.int32) ) # endregion # region: MaxSim path class _MaxSimStripeRunner: """Per-GPU runner for the MaxSim all-vs-all top-k sweep. Owns the resident query-stripe token bank, the double-buffered H2D candidate token tiles, the pre-allocated FP32 similarity / per-token-max / score buffers, and the running top-k state. One instance per ``gt_stripe_maxsim()`` call. The hot loop is bound by Python + allocator overhead at ~1 ms/iter, so every per-microbatch buffer is pre-allocated once in `__init__` and reused. All torch ops in `_score_microbatch` run on the cupy compute stream (via ``torch.cuda.ExternalStream``) — without that binding, torch ops would queue on torch's default stream and race with cupy writes through the merge buffer. """ _BLOCK = (16, 16, 1) def __init__( self, token_bank_host, section_offsets_host, stripe_start_section, stripe_end_section, num_neighbors, query_tile_sections, candidate_tile_sections, log_prefix, ): import cupy import torch self.token_bank_host = token_bank_host self.section_offsets_host = section_offsets_host self.stripe_start_section = stripe_start_section self.stripe_end_section = stripe_end_section self.stripe_size = stripe_end_section - stripe_start_section self.num_neighbors = num_neighbors self.query_tile_sections = query_tile_sections self.candidate_tile_sections = candidate_tile_sections self.log_prefix = log_prefix self.keep = num_neighbors + 1 self.total_sections = section_offsets_host.shape[0] - 1 self.dimensions = token_bank_host.shape[1] # Resident query-stripe token bank on GPU. query_token_start = int(section_offsets_host[stripe_start_section]) query_token_end = int(section_offsets_host[stripe_end_section]) self.query_tokens_device = cupy.asarray( token_bank_host[query_token_start:query_token_end] ) # Per-stripe local section offsets, zeroed against query_token_start. self.query_section_offsets_local = ( section_offsets_host[stripe_start_section : stripe_end_section + 1] - query_token_start ).astype(np.int32) self.query_section_offsets_device = cupy.asarray( self.query_section_offsets_local ) self.segment_max_kernel, self.segment_sum_kernel = _segment_kernels() self.candidate_starts = list( range(0, self.total_sections, candidate_tile_sections) ) max_tile_tokens = self._scan_max_tile_tokens() max_query_tokens_per_tile = self._scan_max_query_tokens() # Pinned host scratch + resident device buffers for candidate tiles. self.pinned_holders: list = [] self.pinned_views: list[np.ndarray] = [] for _ in range(2): pinned = cupy.cuda.alloc_pinned_memory( max_tile_tokens * self.dimensions * 2 ) self.pinned_holders.append(pinned) view = np.frombuffer( pinned, dtype=np.float16, count=max_tile_tokens * self.dimensions ).reshape(max_tile_tokens, self.dimensions) self.pinned_views.append(view) self.doc_token_buffers = [ cupy.empty((max_tile_tokens, self.dimensions), dtype=cupy.float16), cupy.empty((max_tile_tokens, self.dimensions), dtype=cupy.float16), ] self.doc_offsets_buffers = [ cupy.empty((candidate_tile_sections + 1,), dtype=cupy.int32), cupy.empty((candidate_tile_sections + 1,), dtype=cupy.int32), ] # Pre-allocated FP32 scratch for the inner loop. self.sim_buffer = cupy.empty( (max_query_tokens_per_tile, max_tile_tokens), dtype=cupy.float32 ) self.per_token_max = cupy.empty( (max_query_tokens_per_tile, candidate_tile_sections), dtype=cupy.float32 ) self.score_out = cupy.empty( (query_tile_sections, candidate_tile_sections), dtype=cupy.float32 ) self.topk_scores = cupy.full( (self.stripe_size, self.keep), -cupy.inf, dtype=cupy.float32 ) self.topk_indices = cupy.full( (self.stripe_size, self.keep), -1, dtype=cupy.int32 ) # Pre-allocated merge scratch — eliminates allocator churn in the # hot loop. (Q, 2*keep) is small but called per microbatch. self.combined_scores = cupy.empty( (query_tile_sections, 2 * self.keep), dtype=cupy.float32 ) self.combined_indices = cupy.empty( (query_tile_sections, 2 * self.keep), dtype=cupy.int32 ) self.tile_values_t = torch.empty( (query_tile_sections, self.keep), dtype=torch.float32, device="cuda" ) self.tile_local_t = torch.empty( (query_tile_sections, self.keep), dtype=torch.int64, device="cuda" ) self.merge_pos_t = torch.empty( (query_tile_sections, self.keep), dtype=torch.int64, device="cuda" ) # DLPack-wrap pre-allocated cupy buffers as torch views *once*: # re-wrapping per-iter trips torch's DLPack-consume guard on some # versions and surfaces as cudaErrorIllegalAddress later. self.combined_scores_t = torch.from_dlpack(self.combined_scores) self.combined_indices_t = torch.from_dlpack(self.combined_indices) self.topk_scores_t = torch.from_dlpack(self.topk_scores) self.topk_indices_t = torch.from_dlpack(self.topk_indices) self.copy_stream = cupy.cuda.Stream(non_blocking=True) self.compute_stream = cupy.cuda.Stream(non_blocking=True) self.copy_done = [cupy.cuda.Event(disable_timing=True) for _ in range(2)] self.compute_done = [cupy.cuda.Event(disable_timing=True) for _ in range(2)] self.torch_compute_stream = torch.cuda.ExternalStream(self.compute_stream.ptr) def _scan_max_tile_tokens(self) -> int: max_tile_tokens = 0 for candidate_start in self.candidate_starts: candidate_end = min( candidate_start + self.candidate_tile_sections, self.total_sections ) tile_tokens = int( self.section_offsets_host[candidate_end] - self.section_offsets_host[candidate_start] ) if tile_tokens > max_tile_tokens: max_tile_tokens = tile_tokens return max_tile_tokens def _scan_max_query_tokens(self) -> int: # True upper bound on query-token count for any sliding window of # `query_tile_sections` sections within the stripe. The corpus has # outlier sections (max ~1000 tokens) so a coarse heuristic is unsafe. if self.stripe_size <= self.query_tile_sections: return int( self.section_offsets_host[self.stripe_end_section] - self.section_offsets_host[self.stripe_start_section] ) starts = np.arange( self.stripe_start_section, self.stripe_end_section - self.query_tile_sections + 1, ) ends = starts + self.query_tile_sections window_tokens = ( self.section_offsets_host[ends] - self.section_offsets_host[starts] ) return int(window_tokens.max()) def _stage_tile(self, slot: int, candidate_start: int) -> tuple[int, int]: candidate_end = min( candidate_start + self.candidate_tile_sections, self.total_sections ) section_count = candidate_end - candidate_start token_start = int(self.section_offsets_host[candidate_start]) token_end = int(self.section_offsets_host[candidate_end]) token_count = token_end - token_start self.copy_done[slot].synchronize() np.copyto( self.pinned_views[slot][:token_count], self.token_bank_host[token_start:token_end], ) local_offsets = ( self.section_offsets_host[candidate_start : candidate_end + 1] - token_start ).astype(np.int32) self.copy_stream.wait_event(self.compute_done[slot]) self.doc_token_buffers[slot][:token_count].set( self.pinned_views[slot][:token_count], stream=self.copy_stream ) self.doc_offsets_buffers[slot][: section_count + 1].set( local_offsets, stream=self.copy_stream ) self.copy_done[slot].record(self.copy_stream) return section_count, token_count def _score_microbatch( self, slot: int, section_count: int, token_count: int, candidate_start_i32, query_section_start: int, query_section_end: int, ): import cupy import torch query_section_count = query_section_end - query_section_start query_token_start = int( self.query_section_offsets_local[query_section_start] ) query_token_end = int(self.query_section_offsets_local[query_section_end]) query_token_count = query_token_end - query_token_start if query_token_count == 0: return doc_tokens_dev = self.doc_token_buffers[slot][:token_count] doc_offsets_dev = self.doc_offsets_buffers[slot][: section_count + 1] query_tokens_dev = self.query_tokens_device[query_token_start:query_token_end] # Step 1 — matmul into the FP32 sim buffer. sim_view = self.sim_buffer[:query_token_count, :token_count] cupy.matmul(query_tokens_dev, doc_tokens_dev.T, out=sim_view) # Step 2 — per-(q_token, doc) max over the doc-token segment. per_token_max_view = self.per_token_max[:query_token_count, :section_count] block = self._BLOCK grid_max = ( (section_count + block[0] - 1) // block[0], (query_token_count + block[1] - 1) // block[1], 1, ) self.segment_max_kernel( grid_max, block, ( sim_view, doc_offsets_dev, per_token_max_view, np.int32(query_token_count), np.int32(section_count), np.int32(self.sim_buffer.shape[1]), np.int32(self.per_token_max.shape[1]), ), ) # Step 3 — sum over query tokens within each query section. score_view = self.score_out[:query_section_count, :section_count] grid_sum = ( (section_count + block[0] - 1) // block[0], (query_section_count + block[1] - 1) // block[1], 1, ) self.segment_sum_kernel( grid_sum, block, ( per_token_max_view, # Stripe-relative offsets passed unchanged; the kernel # subtracts `offset_base` (the microbatch's first query # token) per call. self.query_section_offsets_device[ query_section_start : query_section_end + 1 ], score_view, np.int32(query_section_count), np.int32(section_count), np.int32(self.per_token_max.shape[1]), np.int32(self.score_out.shape[1]), np.int32(query_token_start), ), ) # Step 4 — top-k of (running ∪ tile) into the running buffer. score_view_t = torch.from_dlpack(score_view) self._merge_running_topk( section_count=section_count, candidate_start_i32=candidate_start_i32, query_section_start=query_section_start, query_section_end=query_section_end, query_section_count=query_section_count, score_view_t=score_view_t, ) def _merge_running_topk( self, section_count: int, candidate_start_i32, query_section_start: int, query_section_end: int, query_section_count: int, score_view_t, ): """Pre-allocated 2-way top-k merge: stage running + tile values side-by-side into the combined buffer, then top-k + gather directly into the running buffer. """ import cupy import torch keep = self.keep running_scores = self.topk_scores_t[query_section_start:query_section_end] running_indices = self.topk_indices_t[query_section_start:query_section_end] if section_count >= keep: torch.topk( score_view_t, k=keep, dim=1, largest=True, sorted=False, out=( self.tile_values_t[:query_section_count], self.tile_local_t[:query_section_count], ), ) self.combined_scores_t[:query_section_count, :keep].copy_(running_scores) self.combined_scores_t[:query_section_count, keep:].copy_( self.tile_values_t[:query_section_count] ) self.combined_indices_t[:query_section_count, :keep].copy_(running_indices) # Tile-local int64 → int32, lift to global by adding tile offset. self.combined_indices[:query_section_count, keep:] = ( cupy.from_dlpack(self.tile_local_t[:query_section_count]).astype( cupy.int32 ) + candidate_start_i32 ) else: # Tile narrower than keep: pad scores with -inf, indices with -1. self.combined_scores_t[:query_section_count, :keep].copy_(running_scores) self.combined_scores_t[ :query_section_count, keep : keep + section_count ].copy_(score_view_t) self.combined_scores_t[ :query_section_count, keep + section_count : ].fill_(float("-inf")) self.combined_indices_t[:query_section_count, :keep].copy_(running_indices) self.combined_indices[ :query_section_count, keep : keep + section_count ] = cupy.arange(section_count, dtype=cupy.int32) + candidate_start_i32 self.combined_indices_t[ :query_section_count, keep + section_count : ].fill_(-1) # Final merge: top-k of (running ∪ tile). Scores write directly into # the running buffer; indices via torch.gather (int64 index). torch.topk( self.combined_scores_t[:query_section_count], k=keep, dim=1, largest=True, sorted=False, out=(running_scores, self.merge_pos_t[:query_section_count]), ) torch.gather( self.combined_indices_t[:query_section_count], 1, self.merge_pos_t[:query_section_count], out=running_indices, ) def _maybe_log_progress(self, tile_idx: int, started: float): import cupy last = tile_idx + 1 == len(self.candidate_starts) if (tile_idx + 1) % 32 != 0 and not last: return self.compute_stream.synchronize() cupy.get_default_memory_pool().free_all_blocks() elapsed = time.monotonic() - started done = (tile_idx + 1) * self.candidate_tile_sections rate = done / max(elapsed, 1e-3) / 1e6 print( f"{self.log_prefix}tile {tile_idx + 1}/{len(self.candidate_starts)} " f"elapsed {elapsed:.0f}s ({rate:.2f}M sect/s)", flush=True, ) def _finalize(self) -> tuple[np.ndarray, np.ndarray]: import cupy sorted_order = cupy.argsort(-self.topk_scores, axis=1) sorted_scores = cupy.take_along_axis(self.topk_scores, sorted_order, axis=1) sorted_indices = cupy.take_along_axis(self.topk_indices, sorted_order, axis=1) query_global_ids = cupy.arange( self.stripe_start_section, self.stripe_end_section, dtype=cupy.int32 ) final_indices, final_scores = _drop_self_match( sorted_scores, sorted_indices, query_global_ids, self.num_neighbors ) return cupy.asnumpy(final_indices), cupy.asnumpy(final_scores) def run(self) -> tuple[np.ndarray, np.ndarray]: import torch counts = [(0, 0), (0, 0)] for slot in range(min(2, len(self.candidate_starts))): counts[slot] = self._stage_tile(slot, self.candidate_starts[slot]) started = time.monotonic() for tile_idx, candidate_start in enumerate(self.candidate_starts): slot = tile_idx % 2 section_count, token_count = counts[slot] if section_count == 0: continue self.compute_stream.wait_event(self.copy_done[slot]) candidate_start_i32 = np.int32(candidate_start) with self.compute_stream, torch.cuda.stream(self.torch_compute_stream): for query_section_start in range( 0, self.stripe_size, self.query_tile_sections ): query_section_end = min( query_section_start + self.query_tile_sections, self.stripe_size, ) self._score_microbatch( slot, section_count, token_count, candidate_start_i32, query_section_start, query_section_end, ) self.compute_done[slot].record(self.compute_stream) prefetch_idx = tile_idx + 2 if prefetch_idx < len(self.candidate_starts): counts[slot] = self._stage_tile( slot, self.candidate_starts[prefetch_idx] ) self._maybe_log_progress(tile_idx, started) self.compute_stream.synchronize() return self._finalize() def gt_stripe_maxsim( token_bank_host: np.ndarray, section_offsets_host: np.ndarray, stripe_start_section: int, stripe_end_section: int, num_neighbors: int, query_tile_sections: int, candidate_tile_sections: int, log_prefix: str = "", ) -> tuple[np.ndarray, np.ndarray]: """Compute exact MaxSim top-k for sections in ``[stripe_start_section, stripe_end_section)`` against the whole section corpus. Returns ``(indices, scores)`` numpy arrays of shape ``(stripe_size, num_neighbors)``. ``token_bank_host`` is ``(T_total, dim)`` FP16; ``section_offsets_host`` is ``(N+1,)`` int32 cumulative (section i's tokens live at rows ``[offsets[i] : offsets[i+1]]``). Caller picks the GPU via ``CUDA_VISIBLE_DEVICES``. """ return _MaxSimStripeRunner( token_bank_host, section_offsets_host, stripe_start_section, stripe_end_section, num_neighbors, query_tile_sections, candidate_tile_sections, log_prefix, ).run() def load_maxsim_corpus( model_root: Path, suffix: str ) -> tuple[np.ndarray, np.ndarray, list[CollectionShard], int]: """Walk ``*.{suffix}.sections.f16bin`` + ``*.sections.offsets.ibin`` shards in canonical order. Returns ``(token_bank, section_offsets, shards, dimensions)``. ``section_offsets`` has shape ``(total_sections + 1,)`` int32 cumulative across all shards (section i's tokens live at ``token_bank[offsets[i] : offsets[i+1]]``). Each ``CollectionShard``'s ``row_count`` is its section count, ``row_offset`` the cumulative section count. """ if not model_root.is_dir(): raise FileNotFoundError(f"no model directory at {model_root}") shards: list[CollectionShard] = [] cumulative_sections = 0 cumulative_tokens = 0 section_offsets_chunks: list[np.ndarray] = [np.zeros(1, dtype=np.int32)] token_chunks: list[tuple[int, int, Path]] = [] dimensions: int | None = None for wiki_dir in sorted(model_root.iterdir()): if not wiki_dir.is_dir(): continue for path in sorted(wiki_dir.glob(f"*.{suffix}.sections.f16bin")): stem = path.name[: -len(f".{suffix}.sections.f16bin")] tokens, dim = _read_header(path) if dimensions is None: dimensions = dim elif dim != dimensions: raise ValueError(f"{path}: dim {dim} != expected {dimensions}") offsets_path = wiki_dir / f"{stem}.{suffix}.sections.offsets.ibin" if not offsets_path.is_file(): raise FileNotFoundError(f"missing offsets file: {offsets_path}") offsets_blob = resolve_lfs_pointer(offsets_path) with open(offsets_blob, "rb") as file: rows, _cols = struct.unpack(" tuple[np.ndarray, np.ndarray]: """``query_token_bank``: ``(T_q, dim)`` FP16. ``query_section_offsets``: ``(Q+1,)`` int32 cumulative. Returns ``(scores, indices)`` — both ``(Q, k)`` numpy arrays. """ import cupy import torch if query_token_bank.ndim != 2 or query_token_bank.shape[1] != self.dimensions: raise ValueError( f"queries shape {query_token_bank.shape} != (?, {self.dimensions})" ) n_queries = query_section_offsets.shape[0] - 1 segment_max_kernel, segment_sum_kernel = _segment_kernels() queries_dev = cupy.asarray(query_token_bank.astype(np.float16, copy=False)) q_offsets_dev = cupy.asarray(query_section_offsets.astype(np.int32, copy=False)) sim = cupy.matmul(queries_dev, self.token_bank_device.T, dtype=cupy.float32) per_token_max = cupy.empty( (queries_dev.shape[0], self.total_sections), dtype=cupy.float32 ) block = (16, 16, 1) grid_max = ( (self.total_sections + block[0] - 1) // block[0], (queries_dev.shape[0] + block[1] - 1) // block[1], 1, ) segment_max_kernel( grid_max, block, ( sim, self.section_offsets_device, per_token_max, np.int32(queries_dev.shape[0]), np.int32(self.total_sections), np.int32(sim.shape[1]), np.int32(per_token_max.shape[1]), ), ) scores = cupy.empty((n_queries, self.total_sections), dtype=cupy.float32) grid_sum = ( (self.total_sections + block[0] - 1) // block[0], (n_queries + block[1] - 1) // block[1], 1, ) segment_sum_kernel( grid_sum, block, ( per_token_max, q_offsets_dev, scores, np.int32(n_queries), np.int32(self.total_sections), np.int32(per_token_max.shape[1]), np.int32(scores.shape[1]), ), ) scores_torch = torch.from_dlpack(scores) values, local = torch.topk(scores_torch, k=k, dim=1, largest=True, sorted=True) return cupy.asnumpy(cupy.from_dlpack(values)), cupy.asnumpy( cupy.from_dlpack(local).astype(cupy.int32) ) # endregion