davanstrien HF Staff commited on
Commit
aa8cefb
·
verified ·
1 Parent(s): f8322bd

Sync from GitHub via hub-sync

Browse files
Files changed (2) hide show
  1. README.md +87 -0
  2. optimize-parquet.py +82 -0
README.md ADDED
@@ -0,0 +1,87 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ viewer: false
3
+ tags:
4
+ - uv-script
5
+ - data-processing
6
+ - parquet
7
+ - buckets
8
+ - webhooks
9
+ ---
10
+
11
+ # Data processing
12
+
13
+ > Part of [uv-scripts](https://huggingface.co/uv-scripts) — self-contained UV scripts you run on Hugging Face Jobs in one command.
14
+
15
+ General data processing recipes: convert, clean and prepare data files.
16
+
17
+ | Script | What it does |
18
+ |---|---|
19
+ | [`optimize-parquet.py`](#optimize-parquetpy-optimized-parquet-from-bucket-uploads) | Converts CSV, JSON and Parquet files uploaded to a bucket into optimized Parquet, triggered by a bucket webhook |
20
+
21
+ ## optimize-parquet.py: optimized Parquet from bucket uploads
22
+
23
+ Upload a CSV, JSON or Parquet file to a [Storage Bucket](https://huggingface.co/docs/hub/storage-buckets) and get an optimized Parquet version in a second bucket, automatically. A bucket [webhook](https://huggingface.co/docs/hub/webhooks) starts a [Job](https://huggingface.co/docs/hub/jobs) for each upload, and the Job converts only the files that changed.
24
+
25
+ ```
26
+ input bucket ──upload──▶ webhook ──▶ Job (optimize-parquet.py) ──▶ output bucket
27
+ data.csv data.csv/data/train-00000-of-00001.parquet
28
+ ```
29
+
30
+ The output is written by [`datasets`](https://huggingface.co/docs/datasets), so it gets the same [optimizations](https://huggingface.co/docs/hub/datasets-libraries#optimized-parquet-files) as `push_to_hub`: content-defined chunking for Xet deduplication, a page index for fast filtering and random access, and row groups of at most 100 MB.
31
+
32
+ ### Setup
33
+
34
+ You need two buckets: one you upload to, and one for the output. The Job writes to a different bucket so that its own output does not trigger it again.
35
+
36
+ ```bash
37
+ hf buckets create my-raw-files --private
38
+ hf buckets create my-parquet --private
39
+ ```
40
+
41
+ **1. Create a base Job for the webhook to re-run.** With no webhook payload, this first run exits straight away:
42
+
43
+ ```bash
44
+ hf jobs run --flavor cpu-upgrade --timeout 2h -e OUTPUT_BUCKET=<user>/my-parquet \
45
+ ghcr.io/astral-sh/uv:python3.12-bookworm \
46
+ uv run https://huggingface.co/datasets/uv-scripts/data-processing/raw/main/optimize-parquet.py
47
+ ```
48
+
49
+ Use `hf jobs run ... uv run <url>` here, not `hf jobs uv run <url>`. `hf jobs uv run` uploads the script as a volume, and webhook runs don't keep volumes.
50
+
51
+ **2. Create a webhook on the input bucket that re-runs this Job:**
52
+
53
+ ```python
54
+ from huggingface_hub import create_webhook
55
+
56
+ create_webhook(
57
+ job_id="<job id from step 1>",
58
+ watched=[{"type": "bucket", "name": "<user>/my-raw-files"}],
59
+ domains=["repo"],
60
+ secret="<fine-grained token>",
61
+ )
62
+ ```
63
+
64
+ The Job uses the webhook `secret` as its token to read and write the buckets. Use a fine-grained token, not your main one.
65
+
66
+ **3. Upload a file:**
67
+
68
+ ```bash
69
+ hf buckets cp data.csv hf://buckets/<user>/my-raw-files/data.csv
70
+ ```
71
+
72
+ After about a minute, the output is in `<user>/my-parquet/data.csv/`: the Parquet file(s) under `data/`, plus a README written by `datasets`.
73
+
74
+ ### Options
75
+
76
+ | Environment variable | Default | Meaning |
77
+ |---|---|---|
78
+ | `OUTPUT_BUCKET` | required | Bucket to write the Parquet files to. Must differ from the watched bucket. |
79
+ | `STREAM_ABOVE_BYTES` | 1/3 of free disk | Files larger than this are streamed instead of loaded to disk. |
80
+
81
+ Files that fit on the Job's disk are loaded in full. Larger files are streamed, so they don't need to fit on the disk (50 GB on `cpu-upgrade`); raise `--timeout` for very large files. Supported inputs: `.csv`, `.json`, `.jsonl`, `.parquet`. Other files are skipped, and deleted files are ignored.
82
+
83
+ ### Notes
84
+
85
+ - **Cost:** a small file takes about 20 seconds on `cpu-upgrade` ($0.03/hour). In testing, one `hf buckets sync` of several files sent one webhook event, so it started one Job.
86
+ - **Pin the script:** each webhook run downloads the script again. To stop changes to this recipe from reaching your webhook, replace `main` in the URL with a commit hash.
87
+ - **Limits:** a webhook can trigger at most 1,000 times per 24 hours. Above 10,000 changed files in one event, the payload list is truncated; those files are not converted.
optimize-parquet.py ADDED
@@ -0,0 +1,82 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # /// script
2
+ # requires-python = ">=3.10"
3
+ # dependencies = ["datasets>=5"]
4
+ # ///
5
+ """Convert CSV, JSON and Parquet files added to a bucket into optimized Parquet
6
+ in a second bucket (OUTPUT_BUCKET).
7
+
8
+ Meant to run as a Job triggered by a bucket webhook: the Job receives the list of
9
+ changed files in WEBHOOK_PAYLOAD. `datasets` writes optimized Parquet by default
10
+ (content-defined chunking, page index, row groups of at most 100MB).
11
+
12
+ Setup (once):
13
+
14
+ # 1. A base Job for the webhook to re-run. With no payload, this first run exits.
15
+ # Use `hf jobs run ... uv run <url>`, not `hf jobs uv run <url>`: the latter uploads
16
+ # the script as a volume, and webhook runs don't keep volumes.
17
+ hf jobs run --flavor cpu-upgrade --timeout 2h -e OUTPUT_BUCKET=<user>/<output-bucket> \\
18
+ ghcr.io/astral-sh/uv:python3.12-bookworm \\
19
+ uv run https://huggingface.co/datasets/uv-scripts/data-processing/raw/main/optimize-parquet.py
20
+
21
+ # 2. A webhook on the input bucket that re-runs that Job on every change.
22
+ from huggingface_hub import create_webhook
23
+ create_webhook(
24
+ job_id="<job id from step 1>",
25
+ watched=[{"type": "bucket", "name": "<user>/<input-bucket>"}],
26
+ domains=["repo"],
27
+ secret="<fine-grained token>",
28
+ )
29
+
30
+ Then upload files to the input bucket, e.g.
31
+ `hf buckets cp data.csv hf://buckets/<user>/<input-bucket>/data.csv`,
32
+ and the output appears at `<output-bucket>/data.csv/data/train-00000-of-00001.parquet`.
33
+ """
34
+
35
+ import json
36
+ import os
37
+ import shutil
38
+ import tempfile
39
+ from pathlib import PurePosixPath
40
+
41
+ from datasets import load_dataset
42
+
43
+ # Use the webhook secret as the token when HF_TOKEN is not set.
44
+ if "HF_TOKEN" not in os.environ and "WEBHOOK_SECRET" in os.environ:
45
+ os.environ["HF_TOKEN"] = os.environ["WEBHOOK_SECRET"]
46
+
47
+ BUILDERS = {".csv": "csv", ".json": "json", ".jsonl": "json", ".parquet": "parquet"}
48
+
49
+ event = json.loads(os.environ.get("WEBHOOK_PAYLOAD", "{}"))
50
+ input_bucket = os.environ.get("WEBHOOK_REPO_ID")
51
+ output_bucket = os.environ["OUTPUT_BUCKET"]
52
+ # Writing to the watched bucket would trigger this Job again for its own output.
53
+ if output_bucket == input_bucket:
54
+ raise SystemExit("OUTPUT_BUCKET must be different from the watched bucket")
55
+
56
+ # A full load needs disk for the download, the Arrow cache and the output.
57
+ # Larger files are streamed instead.
58
+ free_disk = shutil.disk_usage(tempfile.gettempdir()).free
59
+ stream_above = int(os.environ.get("STREAM_ABOVE_BYTES", free_disk // 3))
60
+
61
+ for changed_file in event.get("updatedFiles", []):
62
+ path = PurePosixPath(changed_file["path"])
63
+ if changed_file["action"] != "add":
64
+ continue
65
+ if path.suffix not in BUILDERS:
66
+ print(f"Skipping {path}: unsupported file type")
67
+ continue
68
+
69
+ streaming = changed_file["size"] > stream_above
70
+ mode = "streaming" if streaming else "full load"
71
+ print(f"{path} ({changed_file['size']:,} bytes): {mode}")
72
+ dataset = load_dataset(
73
+ BUILDERS[path.suffix],
74
+ data_files=f"hf://buckets/{input_bucket}/{path}",
75
+ split="train",
76
+ streaming=streaming,
77
+ )
78
+ # a/b.csv -> <output bucket>/a/b.csv/data/train-*.parquet (keeps b.csv and b.jsonl apart)
79
+ # Tabular files have no image/audio files to embed. Setting this also avoids a
80
+ # crash when pushing a streamed CSV/JSON dataset (its features are not known yet).
81
+ dataset.push_to_hub(f"buckets/{output_bucket}/{path}", embed_external_files=False)
82
+ print(f"Wrote buckets/{output_bucket}/{path}")