Commit ·
852e5bf
1
Parent(s): f5c7d6e
Add fan-out mode: shard one run across N Jobs
Browse filesgenerate-embeddings.py gains an env-driven shard mode (RANK/NUM_SHARDS/RUN_ID/
OUTPUT_BUCKET): each worker embeds an exact contiguous slice, writes its parquet
+ progress heartbeats to a Bucket (object PUTs, no commit contention), and
new launch-embedding-fleet.py / consolidate-shards.py handle spawn, wait,
per-rank retry, and the single final merge commit with fleet provenance.
Unsharded behavior is unchanged.
Smoke-tested on Jobs: 20k rows x 2 t4-small workers -> exact 20,000-row output;
kill-one-worker -> --retry-rank -> --consolidate-only recovery verified.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
- README.md +24 -0
- consolidate-shards.py +143 -0
- generate-embeddings.py +154 -3
- launch-embedding-fleet.py +261 -0
README.md
CHANGED
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@@ -21,6 +21,7 @@ their dependencies (sentence-transformers vs vLLM vs Lance) are too different to
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| `generate-embeddings.py` | The default. Text or images. Simple, fast, runs anywhere. | sentence-transformers |
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| `generate-embeddings-vllm.py` | Max throughput on large *decoder* embedding models (Qwen3-Embedding). | vLLM pooling |
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| `embed-to-lance.py` | Get a **searchable vector index as a Hub dataset** (the "vector DB" path). | sentence-transformers + Lance |
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## Quick start
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@@ -38,6 +39,29 @@ hf jobs uv run --flavor l4x1 -s HF_TOKEN \
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Always try `--max-samples 100 --private` first.
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## Which model?
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**Find the *current* best — don't trust a fixed list** (embedding quality moves fast). Check the
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| `generate-embeddings.py` | The default. Text or images. Simple, fast, runs anywhere. | sentence-transformers |
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| `generate-embeddings-vllm.py` | Max throughput on large *decoder* embedding models (Qwen3-Embedding). | vLLM pooling |
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| `embed-to-lance.py` | Get a **searchable vector index as a Hub dataset** (the "vector DB" path). | sentence-transformers + Lance |
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+
| `launch-embedding-fleet.py` | **Fan one run out across N parallel Jobs** (+ `consolidate-shards.py`). | run_uv_job + Buckets |
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## Quick start
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Always try `--max-samples 100 --private` first.
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## Fan-out: N Jobs in parallel
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One L4 does ~900 rows/s with `all-MiniLM-L6-v2`; a fleet of 8 does ~7k. `launch-embedding-fleet.py`
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splits the run into exact, non-overlapping shards (one Job each), workers stream shard parquets +
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progress heartbeats to a [Bucket](https://huggingface.co/docs/hub/storage-buckets) (object writes —
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no repo-commit contention), and a final CPU Job merges everything into the output dataset in one
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commit, with full provenance on the card.
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```bash
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# 8 L4s over a corpus; runs from your laptop, workers run on Jobs
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uv run https://huggingface.co/datasets/uv-scripts/embeddings/raw/main/launch-embedding-fleet.py \
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your-name/corpus your-name/corpus-embeddings --num-shards 8 --flavor l4x1 --timeout 1h
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```
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Every shard is idempotent (a rank overwrites only its own files), so recovery is trivial:
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`--retry-rank 3 --run-id <id>` re-runs one failed shard with the run's original config,
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`--consolidate-only --run-id <id>` re-runs the merge. Each worker's timeout gives a **hard cost
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ceiling**: a fleet can never cost more than `N × flavor-rate × timeout`.
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Scale note: workers shard row-wise after loading the split, so each rank still downloads the full
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split first — fine up to a few tens of millions of rows; beyond that, shard at the file level or
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stream (planned follow-up).
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## Which model?
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**Find the *current* best — don't trust a fixed list** (embedding quality moves fast). Check the
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consolidate-shards.py
ADDED
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@@ -0,0 +1,143 @@
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# /// script
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# requires-python = ">=3.10"
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# dependencies = [
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# "datasets",
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# "huggingface-hub>=1.12",
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# ]
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# ///
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"""
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Merge the parquet shards of a fan-out embedding run (see launch-embedding-fleet.py)
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into the final Hub dataset, in one commit, with a provenance card.
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Reads runs/<run-id>/run.json from the run bucket, verifies all shards are present,
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downloads them, and pushes the concatenated dataset. Deliberately the ONLY step in
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the fleet that commits to a dataset repo — workers write bucket objects, so N-way
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commit contention (412s) can't happen by construction.
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Usually spawned as a cpu Job by the launcher; can also run locally:
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uv run consolidate-shards.py --bucket you/embedding-runs --run-id 20260709-1200-abc123
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"""
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import argparse
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import json
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import logging
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import os
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import sys
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import tempfile
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import time
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from pathlib import Path
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logging.basicConfig(level=logging.INFO, format="%(asctime)s %(levelname)s %(message)s")
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logger = logging.getLogger("consolidate-shards")
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def main():
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p = argparse.ArgumentParser(description=__doc__, formatter_class=argparse.RawDescriptionHelpFormatter)
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p.add_argument("--bucket", required=True, help="Run bucket, e.g. you/embedding-runs")
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p.add_argument("--run-id", required=True)
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p.add_argument("--private", action="store_true")
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args = p.parse_args()
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from datasets import load_dataset
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from huggingface_hub import DatasetCard, download_bucket_files, list_bucket_tree, login
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token = os.environ.get("HF_TOKEN")
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if token:
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login(token=token)
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prefix = f"runs/{args.run_id}"
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workdir = Path(tempfile.mkdtemp(prefix=f"consolidate-{args.run_id}-"))
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download_bucket_files(args.bucket, [(f"{prefix}/run.json", workdir / "run.json")],
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raise_on_missing_files=True)
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run = json.loads((workdir / "run.json").read_text())
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n = run["num_shards"]
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out_repo = run["output_dataset"]
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shard_paths = sorted(
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f.path for f in list_bucket_tree(args.bucket, prefix=f"{prefix}/data/", recursive=True)
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if getattr(f, "path", "").endswith(".parquet")
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)
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expected = [f"{prefix}/data/{i:05d}.parquet" for i in range(n)]
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missing = sorted(set(expected) - set(shard_paths))
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if missing:
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logger.error(f"Missing {len(missing)}/{n} shard(s): {missing}")
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logger.error("Re-run those ranks (launch-embedding-fleet.py --retry-rank), then consolidate again.")
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sys.exit(1)
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logger.info(f"Downloading {n} shards from {args.bucket}/{prefix}/data/")
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local = [(path, workdir / Path(path).name) for path in expected]
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download_bucket_files(args.bucket, local, raise_on_missing_files=True)
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ds = load_dataset("parquet", data_files=[str(dst) for _, dst in local], split="train")
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logger.info(f"Merged {n} shards → {len(ds):,} rows (manifest says {run['rows_total']:,})")
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if run.get("rows_total") and len(ds) != run["rows_total"]:
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logger.warning("Row count differs from manifest — check for a re-run with different --max-samples.")
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# Read final worker statuses for the card's timing/throughput line (best effort).
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stats_line = ""
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try:
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status_files = [(f"{prefix}/status/{i:05d}.json", workdir / f"status-{i:05d}.json") for i in range(n)]
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download_bucket_files(args.bucket, status_files)
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statuses = [json.loads(dst.read_text()) for _, dst in status_files if dst.exists()]
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if statuses:
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wall = max(s["updated_at"] for s in statuses) - min(s["started_at"] for s in statuses)
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rps = sum(s.get("rows_per_sec") or 0 for s in statuses)
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stats_line = f"- Fleet wall-clock: ~{wall / 60:.1f} min · aggregate ~{rps:,.0f} rows/s\n"
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except Exception as e:
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logger.info(f"status stats skipped: {e}")
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script_url = "https://huggingface.co/datasets/uv-scripts/embeddings/raw/main/generate-embeddings.py"
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launcher_url = "https://huggingface.co/datasets/uv-scripts/embeddings/raw/main/launch-embedding-fleet.py"
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on_jobs = os.environ.get("JOB_ID") is not None
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origin = ("Produced on [Hugging Face Jobs](https://huggingface.co/docs/huggingface_hub/guides/jobs)"
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if on_jobs else "Generated")
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jobs_tag = "\n- hf-jobs" if on_jobs else ""
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job_list = "".join(f" - shard {i}: `{jid}`\n" for i, jid in enumerate(run.get("job_ids", [])))
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card = DatasetCard(
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f"---\ntags:\n- embeddings\n- uv-script\n- generated{jobs_tag}\n---\n\n"
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f"# {out_repo}\n\n"
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f"Embeddings of [`{run['input_dataset']}`](https://huggingface.co/datasets/{run['input_dataset']}) "
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f"column `{run['column']}`, computed by a fleet of {n} parallel Jobs.\n\n"
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f"- Model: [`{run['model']}`](https://huggingface.co/{run['model']})\n"
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f"- Fleet: {n} × `{run['flavor']}` · run `{run['run_id']}`\n"
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f"{stats_line}"
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f"- Worker jobs:\n{job_list}\n"
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f"## Reproduction\n\n"
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f"{origin} with the [`generate-embeddings.py`]({script_url}) recipe from "
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f"[uv-scripts](https://huggingface.co/uv-scripts), fanned out with "
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f"[`launch-embedding-fleet.py`]({launcher_url}):\n\n"
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f"```bash\nuv run {launcher_url} \\\n"
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f" {run['input_dataset']} <output-dataset> --column {run['column']} "
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f"--model {run['model']} --num-shards {n} --flavor {run['flavor']}\n```\n"
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)
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# Same retry + XET-disable fallback as generate-embeddings.py: a transient upload
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# failure here would waste the whole fleet's (paid) work.
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private = args.private or run.get("private", False)
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logger.info(f"Pushing to {out_repo} (private={private})")
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max_retries = 3
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for attempt in range(1, max_retries + 1):
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try:
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if attempt > 1:
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logger.warning("Disabling XET (fallback to HTTP upload)")
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os.environ["HF_HUB_DISABLE_XET"] = "1"
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ds.push_to_hub(out_repo, private=private)
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break
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except Exception as e:
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logger.error(f"Upload attempt {attempt}/{max_retries} failed: {e}")
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if attempt < max_retries:
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delay = 30 * (2 ** (attempt - 1))
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logger.info(f"Retrying in {delay}s...")
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time.sleep(delay)
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else:
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logger.error("All upload attempts failed. Shards remain in the bucket — re-run consolidation.")
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sys.exit(1)
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try:
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card.push_to_hub(out_repo, repo_type="dataset")
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except Exception as e:
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logger.warning(f"card push skipped: {e}")
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logger.info(f"✅ https://huggingface.co/datasets/{out_repo}")
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if __name__ == "__main__":
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main()
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generate-embeddings.py
CHANGED
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# "numpy",
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# "pillow",
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# "einops",
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-
# "huggingface-hub",
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# ]
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# ///
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"""
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# Test on a small slice first, keep the output private
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hf jobs uv run --flavor l4x1 -s HF_TOKEN generate-embeddings.py \\
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stanfordnlp/imdb your-name/imdb-emb --max-samples 100 --private
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"""
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import argparse
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import logging
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@@ -204,6 +216,61 @@ def sniff_token_lengths(model, texts, max_seq_len, sample=512):
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return median
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def main():
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p = argparse.ArgumentParser(description=__doc__, formatter_class=argparse.RawDescriptionHelpFormatter)
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p.add_argument("input_dataset", help="Input dataset ID on the Hugging Face Hub")
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@@ -232,8 +299,42 @@ def main():
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p.add_argument("--normalize", action="store_true", default=True)
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p.add_argument("--no-normalize", dest="normalize", action="store_false")
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p.add_argument("--private", action="store_true", help="Make the output dataset private")
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 235 |
args = p.parse_args()
|
| 236 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
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|
|
|
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|
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|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
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|
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|
|
|
|
|
|
|
|
|
| 237 |
import torch
|
| 238 |
from datasets import load_dataset
|
| 239 |
from huggingface_hub import DatasetCard, login
|
|
@@ -256,6 +357,15 @@ def main():
|
|
| 256 |
sys.exit(1)
|
| 257 |
if args.max_samples:
|
| 258 |
ds = ds.select(range(min(args.max_samples, len(ds))))
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
| 259 |
logger.info(f"{len(ds)} rows; modality={args.modality}")
|
| 260 |
|
| 261 |
device = "cuda" if torch.cuda.is_available() else "cpu"
|
|
@@ -302,14 +412,55 @@ def main():
|
|
| 302 |
else:
|
| 303 |
encode_fn = model.encode
|
| 304 |
encode_kwargs = {}
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 305 |
t0 = time.perf_counter()
|
| 306 |
-
|
| 307 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 308 |
secs = time.perf_counter() - t0
|
| 309 |
logger.info(f"Embedded {len(items)} in {secs:.1f}s ({len(items)/secs:.0f} rows/s), dim={dim}")
|
| 310 |
|
| 311 |
ds = ds.add_column(args.output_column, [e.tolist() for e in emb])
|
| 312 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 313 |
# For the card: record the effective prefix (explicit, else the model's registered one).
|
| 314 |
side_keys = ("query",) if args.query_mode else ("document", "passage", "corpus")
|
| 315 |
effective = prompt_str if prompt_str is not None else next(
|
|
|
|
| 7 |
# "numpy",
|
| 8 |
# "pillow",
|
| 9 |
# "einops",
|
| 10 |
+
# "huggingface-hub>=1.12",
|
| 11 |
# ]
|
| 12 |
# ///
|
| 13 |
"""
|
|
|
|
| 56 |
# Test on a small slice first, keep the output private
|
| 57 |
hf jobs uv run --flavor l4x1 -s HF_TOKEN generate-embeddings.py \\
|
| 58 |
stanfordnlp/imdb your-name/imdb-emb --max-samples 100 --private
|
| 59 |
+
|
| 60 |
+
FAN-OUT (multi-job) MODE:
|
| 61 |
+
Split one embedding run across N Jobs with --num-shards/--shard-index (or the RANK /
|
| 62 |
+
NUM_SHARDS / RUN_ID / OUTPUT_BUCKET env vars, so a launcher only varies RANK per job —
|
| 63 |
+
see launch-embedding-fleet.py). Each shard takes an exact, non-overlapping contiguous
|
| 64 |
+
slice, writes its rows to the run's bucket as runs/<run-id>/data/<rank>.parquet (object
|
| 65 |
+
PUTs — no repo-commit contention), and heartbeats progress to
|
| 66 |
+
runs/<run-id>/status/<rank>.json. consolidate-shards.py merges shards into the final
|
| 67 |
+
dataset with one commit. Re-running a failed rank overwrites only its own files (resume).
|
| 68 |
+
Note: --max-samples applies BEFORE sharding, so a capped run still partitions exactly.
|
| 69 |
+
Each rank still downloads the full split before slicing — fine at few-million-row scale;
|
| 70 |
+
for larger corpora shard at the file level or stream instead.
|
| 71 |
"""
|
| 72 |
import argparse
|
| 73 |
import logging
|
|
|
|
| 216 |
return median
|
| 217 |
|
| 218 |
|
| 219 |
+
def put_bucket_files(bucket_id, add, max_retries=3):
|
| 220 |
+
"""batch_bucket_files with a short retry — bucket PUTs are cheap object writes but can
|
| 221 |
+
flake transiently; shard data must not be lost to a blip."""
|
| 222 |
+
from huggingface_hub import batch_bucket_files
|
| 223 |
+
for attempt in range(1, max_retries + 1):
|
| 224 |
+
try:
|
| 225 |
+
batch_bucket_files(bucket_id, add=add)
|
| 226 |
+
return True
|
| 227 |
+
except Exception as e:
|
| 228 |
+
if attempt == max_retries:
|
| 229 |
+
raise
|
| 230 |
+
logger.warning(f"bucket PUT attempt {attempt}/{max_retries} failed: {e}; retrying in {5 * attempt}s")
|
| 231 |
+
time.sleep(5 * attempt)
|
| 232 |
+
|
| 233 |
+
|
| 234 |
+
class StatusReporter:
|
| 235 |
+
"""Fan-out worker heartbeat: PUTs runs/<run-id>/status/<rank>.json to the run bucket,
|
| 236 |
+
throttled to one write per ~30s (last-writer-wins per key, so N workers never contend).
|
| 237 |
+
A failed status write must never kill a paid embedding run — errors are logged, not raised."""
|
| 238 |
+
|
| 239 |
+
def __init__(self, bucket, run_id, rank, rows_total, tokens_per_row=None):
|
| 240 |
+
self.bucket, self.run_id, self.rank = bucket, run_id, rank
|
| 241 |
+
self.rows_total, self.tokens_per_row = rows_total, tokens_per_row
|
| 242 |
+
self.started_at = time.time()
|
| 243 |
+
self.rows_done = 0
|
| 244 |
+
self._last_write = 0.0
|
| 245 |
+
|
| 246 |
+
def report(self, rows_done=None, state="running", force=False):
|
| 247 |
+
import json
|
| 248 |
+
if rows_done is not None:
|
| 249 |
+
self.rows_done = rows_done
|
| 250 |
+
now = time.time()
|
| 251 |
+
if not force and now - self._last_write < 30:
|
| 252 |
+
return
|
| 253 |
+
elapsed = max(now - self.started_at, 1e-6)
|
| 254 |
+
payload = {
|
| 255 |
+
"run_id": self.run_id,
|
| 256 |
+
"rank": self.rank,
|
| 257 |
+
"state": state,
|
| 258 |
+
"rows_done": self.rows_done,
|
| 259 |
+
"rows_total": self.rows_total,
|
| 260 |
+
"tokens_done_est": int(self.rows_done * self.tokens_per_row) if self.tokens_per_row else None,
|
| 261 |
+
"rows_per_sec": round(self.rows_done / elapsed, 1),
|
| 262 |
+
"started_at": self.started_at,
|
| 263 |
+
"updated_at": now,
|
| 264 |
+
"job_id": os.environ.get("JOB_ID"),
|
| 265 |
+
}
|
| 266 |
+
dest = f"runs/{self.run_id}/status/{self.rank:05d}.json"
|
| 267 |
+
try:
|
| 268 |
+
put_bucket_files(self.bucket, [(json.dumps(payload).encode(), dest)], max_retries=2)
|
| 269 |
+
self._last_write = now
|
| 270 |
+
except Exception as e:
|
| 271 |
+
logger.warning(f"status write skipped ({e})")
|
| 272 |
+
|
| 273 |
+
|
| 274 |
def main():
|
| 275 |
p = argparse.ArgumentParser(description=__doc__, formatter_class=argparse.RawDescriptionHelpFormatter)
|
| 276 |
p.add_argument("input_dataset", help="Input dataset ID on the Hugging Face Hub")
|
|
|
|
| 299 |
p.add_argument("--normalize", action="store_true", default=True)
|
| 300 |
p.add_argument("--no-normalize", dest="normalize", action="store_false")
|
| 301 |
p.add_argument("--private", action="store_true", help="Make the output dataset private")
|
| 302 |
+
# Fan-out mode (see docstring). Env-defaulted so a launcher drives workers purely via env.
|
| 303 |
+
# Defaults stay raw strings; int conversion happens after parse so a malformed env var
|
| 304 |
+
# reaches p.error() instead of blowing up argparse construction.
|
| 305 |
+
p.add_argument("--num-shards", default=os.environ.get("NUM_SHARDS"),
|
| 306 |
+
help="Fan-out: total number of shards (env NUM_SHARDS). Enables shard mode.")
|
| 307 |
+
p.add_argument("--shard-index", default=os.environ.get("RANK"),
|
| 308 |
+
help="Fan-out: this worker's shard index, 0-based (env RANK).")
|
| 309 |
+
p.add_argument("--output-bucket", default=os.environ.get("OUTPUT_BUCKET"),
|
| 310 |
+
help="Fan-out: bucket for shard parquets + status (env OUTPUT_BUCKET).")
|
| 311 |
+
p.add_argument("--run-id", default=os.environ.get("RUN_ID"),
|
| 312 |
+
help="Fan-out: run identifier grouping shards under runs/<run-id>/ (env RUN_ID).")
|
| 313 |
args = p.parse_args()
|
| 314 |
|
| 315 |
+
def int_or_error(val, name):
|
| 316 |
+
if val is None:
|
| 317 |
+
return None
|
| 318 |
+
try:
|
| 319 |
+
return int(val)
|
| 320 |
+
except (TypeError, ValueError):
|
| 321 |
+
p.error(f"{name} must be an integer (got {val!r}).")
|
| 322 |
+
|
| 323 |
+
args.num_shards = int_or_error(args.num_shards, "--num-shards / NUM_SHARDS")
|
| 324 |
+
args.shard_index = int_or_error(args.shard_index, "--shard-index / RANK")
|
| 325 |
+
|
| 326 |
+
sharded = args.num_shards is not None
|
| 327 |
+
if sharded:
|
| 328 |
+
if args.num_shards < 1:
|
| 329 |
+
p.error(f"--num-shards must be >= 1 (got {args.num_shards}).")
|
| 330 |
+
if args.shard_index is None or not 0 <= args.shard_index < args.num_shards:
|
| 331 |
+
p.error(f"--shard-index must be in [0, {args.num_shards}) when --num-shards is set "
|
| 332 |
+
f"(got {args.shard_index}).")
|
| 333 |
+
if not (args.output_bucket and args.run_id):
|
| 334 |
+
p.error("fan-out mode needs --output-bucket and --run-id (env OUTPUT_BUCKET / RUN_ID).")
|
| 335 |
+
elif args.shard_index is not None:
|
| 336 |
+
p.error("--shard-index requires --num-shards.")
|
| 337 |
+
|
| 338 |
import torch
|
| 339 |
from datasets import load_dataset
|
| 340 |
from huggingface_hub import DatasetCard, login
|
|
|
|
| 357 |
sys.exit(1)
|
| 358 |
if args.max_samples:
|
| 359 |
ds = ds.select(range(min(args.max_samples, len(ds))))
|
| 360 |
+
if sharded:
|
| 361 |
+
# Contiguous slices keep row order reconstructable at consolidation. Note the whole
|
| 362 |
+
# split was still downloaded above — acceptable at few-M rows, not at corpus scale.
|
| 363 |
+
ds = ds.shard(num_shards=args.num_shards, index=args.shard_index, contiguous=True)
|
| 364 |
+
logger.info(f"Fan-out shard {args.shard_index + 1}/{args.num_shards} of run {args.run_id}")
|
| 365 |
+
if len(ds) == 0:
|
| 366 |
+
logger.error(f"Shard {args.shard_index} is empty — num_shards exceeds the row count. "
|
| 367 |
+
f"Lower --num-shards (or raise --max-samples).")
|
| 368 |
+
sys.exit(1)
|
| 369 |
logger.info(f"{len(ds)} rows; modality={args.modality}")
|
| 370 |
|
| 371 |
device = "cuda" if torch.cuda.is_available() else "cpu"
|
|
|
|
| 412 |
else:
|
| 413 |
encode_fn = model.encode
|
| 414 |
encode_kwargs = {}
|
| 415 |
+
reporter = None
|
| 416 |
+
if sharded:
|
| 417 |
+
reporter = StatusReporter(args.output_bucket, args.run_id, args.shard_index,
|
| 418 |
+
rows_total=len(items), tokens_per_row=median_tok)
|
| 419 |
+
reporter.report(0, force=True)
|
| 420 |
+
|
| 421 |
t0 = time.perf_counter()
|
| 422 |
+
try:
|
| 423 |
+
if reporter is None:
|
| 424 |
+
emb = encode_fn(items, batch_size=batch_size, show_progress_bar=True,
|
| 425 |
+
convert_to_numpy=True, normalize_embeddings=args.normalize, **encode_kwargs)
|
| 426 |
+
else:
|
| 427 |
+
# Macro-chunks so the heartbeat can report rows_done between encode calls.
|
| 428 |
+
# Chunking doesn't change results — batching happens at batch_size regardless.
|
| 429 |
+
import numpy as np
|
| 430 |
+
chunk_rows = 25_000
|
| 431 |
+
parts = []
|
| 432 |
+
for start in range(0, len(items), chunk_rows):
|
| 433 |
+
chunk = items[start:start + chunk_rows]
|
| 434 |
+
parts.append(encode_fn(chunk, batch_size=batch_size, show_progress_bar=True,
|
| 435 |
+
convert_to_numpy=True, normalize_embeddings=args.normalize,
|
| 436 |
+
**encode_kwargs))
|
| 437 |
+
reporter.report(start + len(chunk))
|
| 438 |
+
emb = np.concatenate(parts) if len(parts) > 1 else parts[0]
|
| 439 |
+
except Exception:
|
| 440 |
+
if reporter:
|
| 441 |
+
reporter.report(state="error", force=True)
|
| 442 |
+
raise
|
| 443 |
secs = time.perf_counter() - t0
|
| 444 |
logger.info(f"Embedded {len(items)} in {secs:.1f}s ({len(items)/secs:.0f} rows/s), dim={dim}")
|
| 445 |
|
| 446 |
ds = ds.add_column(args.output_column, [e.tolist() for e in emb])
|
| 447 |
|
| 448 |
+
if sharded:
|
| 449 |
+
# Shard mode: no repo commit here (N workers committing → 412 contention). Write this
|
| 450 |
+
# rank's parquet to the run bucket; consolidate-shards.py makes the single final commit.
|
| 451 |
+
out_path = f"/tmp/shard-{args.shard_index:05d}.parquet"
|
| 452 |
+
dest = f"runs/{args.run_id}/data/{args.shard_index:05d}.parquet"
|
| 453 |
+
try:
|
| 454 |
+
ds.to_parquet(out_path)
|
| 455 |
+
logger.info(f"Uploading shard parquet → {args.output_bucket}/{dest}")
|
| 456 |
+
put_bucket_files(args.output_bucket, [(out_path, dest)])
|
| 457 |
+
except Exception:
|
| 458 |
+
reporter.report(state="error", force=True)
|
| 459 |
+
raise
|
| 460 |
+
reporter.report(len(items), state="done", force=True)
|
| 461 |
+
logger.info(f"✅ shard {args.shard_index + 1}/{args.num_shards} of run {args.run_id} uploaded")
|
| 462 |
+
return
|
| 463 |
+
|
| 464 |
# For the card: record the effective prefix (explicit, else the model's registered one).
|
| 465 |
side_keys = ("query",) if args.query_mode else ("document", "passage", "corpus")
|
| 466 |
effective = prompt_str if prompt_str is not None else next(
|
launch-embedding-fleet.py
ADDED
|
@@ -0,0 +1,261 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
| 1 |
+
# /// script
|
| 2 |
+
# requires-python = ">=3.10"
|
| 3 |
+
# dependencies = [
|
| 4 |
+
# "datasets",
|
| 5 |
+
# "huggingface-hub>=1.12",
|
| 6 |
+
# ]
|
| 7 |
+
# ///
|
| 8 |
+
"""
|
| 9 |
+
Fan one embedding run out across N Hugging Face Jobs, then consolidate.
|
| 10 |
+
|
| 11 |
+
Runs generate-embeddings.py once per shard (each worker gets RANK / NUM_SHARDS /
|
| 12 |
+
RUN_ID / OUTPUT_BUCKET via env), workers write parquet shards + progress heartbeats
|
| 13 |
+
to the run bucket (object PUTs — no repo-commit contention), and when all workers
|
| 14 |
+
finish a consolidation Job merges the shards into the final Hub dataset with one
|
| 15 |
+
commit. Runs locally on your laptop; only the workers/consolidator run on Jobs.
|
| 16 |
+
|
| 17 |
+
Examples:
|
| 18 |
+
# Smoke: 2 small-GPU jobs over a 20k-row slice
|
| 19 |
+
uv run launch-embedding-fleet.py stanfordnlp/imdb your-name/imdb-emb \\
|
| 20 |
+
--max-samples 20000 --num-shards 2 --flavor t4-small --timeout 20m
|
| 21 |
+
|
| 22 |
+
# Mid-size: 8 L4s over a few million rows
|
| 23 |
+
uv run launch-embedding-fleet.py your-name/corpus your-name/corpus-emb \\
|
| 24 |
+
--num-shards 8 --flavor l4x1 --timeout 1h
|
| 25 |
+
|
| 26 |
+
# Re-run one failed shard, then consolidate an existing run
|
| 27 |
+
uv run launch-embedding-fleet.py ... --run-id 20260709-1200-abc123 --retry-rank 3
|
| 28 |
+
uv run launch-embedding-fleet.py ... --run-id 20260709-1200-abc123 --consolidate-only
|
| 29 |
+
|
| 30 |
+
Resume model: every worker writes only runs/<run-id>/data/<rank>.parquet and its own
|
| 31 |
+
status file, so re-running a rank is idempotent. The launcher exiting early never
|
| 32 |
+
orphans a run — --retry-rank / --consolidate-only pick it back up.
|
| 33 |
+
"""
|
| 34 |
+
import argparse
|
| 35 |
+
import json
|
| 36 |
+
import logging
|
| 37 |
+
import os
|
| 38 |
+
import secrets as pysecrets
|
| 39 |
+
import sys
|
| 40 |
+
import time
|
| 41 |
+
|
| 42 |
+
logging.basicConfig(level=logging.INFO, format="%(asctime)s %(levelname)s %(message)s")
|
| 43 |
+
logger = logging.getLogger("launch-embedding-fleet")
|
| 44 |
+
|
| 45 |
+
SCRIPT_BASE = "https://huggingface.co/datasets/uv-scripts/embeddings/raw/main"
|
| 46 |
+
|
| 47 |
+
|
| 48 |
+
def put_json(bucket, path, obj, token=None):
|
| 49 |
+
from huggingface_hub import batch_bucket_files
|
| 50 |
+
batch_bucket_files(bucket, add=[(json.dumps(obj, indent=2).encode(), path)], token=token)
|
| 51 |
+
|
| 52 |
+
|
| 53 |
+
def rows_in_split(input_dataset, config, split):
|
| 54 |
+
"""Row count WITHOUT downloading: builder metadata, else the dataset-viewer size API."""
|
| 55 |
+
try:
|
| 56 |
+
from datasets import load_dataset_builder
|
| 57 |
+
b = load_dataset_builder(input_dataset, config) if config else load_dataset_builder(input_dataset)
|
| 58 |
+
n = b.info.splits[split].num_examples
|
| 59 |
+
if n:
|
| 60 |
+
return n
|
| 61 |
+
except Exception as e:
|
| 62 |
+
logger.info(f"builder metadata unavailable ({e}); trying dataset-viewer size API")
|
| 63 |
+
try:
|
| 64 |
+
import huggingface_hub
|
| 65 |
+
r = huggingface_hub.get_session().get(
|
| 66 |
+
"https://datasets-server.huggingface.co/size", params={"dataset": input_dataset}
|
| 67 |
+
)
|
| 68 |
+
r.raise_for_status()
|
| 69 |
+
for s in r.json()["size"]["splits"]:
|
| 70 |
+
if s["split"] == split and (config is None or s["config"] == config):
|
| 71 |
+
return s["num_rows"]
|
| 72 |
+
except Exception as e:
|
| 73 |
+
logger.info(f"size API unavailable ({e})")
|
| 74 |
+
return None
|
| 75 |
+
|
| 76 |
+
|
| 77 |
+
def main():
|
| 78 |
+
p = argparse.ArgumentParser(description=__doc__, formatter_class=argparse.RawDescriptionHelpFormatter)
|
| 79 |
+
p.add_argument("input_dataset")
|
| 80 |
+
p.add_argument("output_dataset")
|
| 81 |
+
p.add_argument("--model", default="sentence-transformers/all-MiniLM-L6-v2")
|
| 82 |
+
p.add_argument("--column", default="text")
|
| 83 |
+
p.add_argument("--split", default="train")
|
| 84 |
+
p.add_argument("--config", default=None)
|
| 85 |
+
p.add_argument("--max-samples", type=int, default=None)
|
| 86 |
+
p.add_argument("--num-shards", type=int, default=8)
|
| 87 |
+
p.add_argument("--flavor", default="l4x1")
|
| 88 |
+
p.add_argument("--timeout", default="1h", help="Per-worker timeout — also the hard cost ceiling")
|
| 89 |
+
p.add_argument("--bucket", default=None,
|
| 90 |
+
help="Run bucket (default: <namespace>/embedding-runs)")
|
| 91 |
+
p.add_argument("--script", default=f"{SCRIPT_BASE}/generate-embeddings.py",
|
| 92 |
+
help="Worker script: raw URL (default) or a local .py path for dev")
|
| 93 |
+
p.add_argument("--consolidate-script", default=f"{SCRIPT_BASE}/consolidate-shards.py",
|
| 94 |
+
help="Consolidator script: raw URL (default) or local path for dev")
|
| 95 |
+
p.add_argument("--rows-total", type=int, default=None,
|
| 96 |
+
help="Override when the dataset has no split metadata")
|
| 97 |
+
p.add_argument("--private", action="store_true", help="Final output dataset is private")
|
| 98 |
+
p.add_argument("--embed-args", nargs=argparse.REMAINDER, default=[],
|
| 99 |
+
help="Everything after --embed-args is passed through to generate-embeddings.py "
|
| 100 |
+
"verbatim — put it LAST (any launcher flags after it are swallowed too).")
|
| 101 |
+
p.add_argument("--run-id", default=None, help="Attach to an existing run (with --retry-rank/--consolidate-only)")
|
| 102 |
+
p.add_argument("--retry-rank", type=int, default=None, help="Re-spawn a single failed shard of --run-id")
|
| 103 |
+
p.add_argument("--consolidate-only", action="store_true", help="Just run consolidation for --run-id")
|
| 104 |
+
p.add_argument("--no-wait", action="store_true",
|
| 105 |
+
help="Spawn workers and exit (run --consolidate-only later)")
|
| 106 |
+
args = p.parse_args()
|
| 107 |
+
|
| 108 |
+
from huggingface_hub import (JobStage, create_bucket, download_bucket_files, get_token,
|
| 109 |
+
run_uv_job, wait_for_job, whoami)
|
| 110 |
+
|
| 111 |
+
# Workers need a real token as a secret (bucket writes + output push); env may be empty
|
| 112 |
+
# when the user authenticated via `hf auth login` (keyring/hub cache).
|
| 113 |
+
token = os.environ.get("HF_TOKEN") or get_token()
|
| 114 |
+
if not token:
|
| 115 |
+
p.error("No HF token found — set HF_TOKEN or run `hf auth login`.")
|
| 116 |
+
namespace = whoami(token=token)["name"]
|
| 117 |
+
bucket = args.bucket or f"{namespace}/embedding-runs"
|
| 118 |
+
|
| 119 |
+
if (args.retry_rank is not None or args.consolidate_only) and not args.run_id:
|
| 120 |
+
p.error("--retry-rank / --consolidate-only need --run-id")
|
| 121 |
+
if args.num_shards < 1:
|
| 122 |
+
p.error(f"--num-shards must be >= 1 (got {args.num_shards})")
|
| 123 |
+
|
| 124 |
+
def read_manifest(run_id):
|
| 125 |
+
import tempfile
|
| 126 |
+
from pathlib import Path
|
| 127 |
+
with tempfile.TemporaryDirectory() as td:
|
| 128 |
+
dst = Path(td) / "run.json"
|
| 129 |
+
download_bucket_files(bucket, [(f"runs/{run_id}/run.json", dst)],
|
| 130 |
+
raise_on_missing_files=True, token=token)
|
| 131 |
+
return json.loads(dst.read_text())
|
| 132 |
+
|
| 133 |
+
# Workers are always spawned from the run manifest, never from current CLI flags —
|
| 134 |
+
# a --retry-rank months later must reproduce the original slice/model/args exactly.
|
| 135 |
+
def spawn_worker(rank, manifest):
|
| 136 |
+
script_args = [manifest["input_dataset"], manifest["output_dataset"],
|
| 137 |
+
"--model", manifest["model"], "--column", manifest["column"],
|
| 138 |
+
"--split", manifest["split"]]
|
| 139 |
+
if manifest.get("config"):
|
| 140 |
+
script_args += ["--config", manifest["config"]]
|
| 141 |
+
if manifest.get("max_samples"):
|
| 142 |
+
script_args += ["--max-samples", str(manifest["max_samples"])]
|
| 143 |
+
script_args += list(manifest.get("embed_args") or [])
|
| 144 |
+
job = run_uv_job(
|
| 145 |
+
args.script,
|
| 146 |
+
script_args=script_args,
|
| 147 |
+
flavor=manifest["flavor"],
|
| 148 |
+
timeout=manifest["timeout"],
|
| 149 |
+
env={
|
| 150 |
+
"RANK": str(rank),
|
| 151 |
+
"NUM_SHARDS": str(manifest["num_shards"]),
|
| 152 |
+
"RUN_ID": manifest["run_id"],
|
| 153 |
+
"OUTPUT_BUCKET": bucket,
|
| 154 |
+
},
|
| 155 |
+
secrets={"HF_TOKEN": token},
|
| 156 |
+
labels={"embedding-fleet-run": manifest["run_id"], "rank": str(rank)},
|
| 157 |
+
token=token,
|
| 158 |
+
)
|
| 159 |
+
logger.info(f" rank {rank} → job {job.id} ({manifest['flavor']})")
|
| 160 |
+
return job
|
| 161 |
+
|
| 162 |
+
def spawn_consolidator(run_id):
|
| 163 |
+
job = run_uv_job(
|
| 164 |
+
args.consolidate_script,
|
| 165 |
+
script_args=[
|
| 166 |
+
"--bucket", bucket, "--run-id", run_id,
|
| 167 |
+
] + (["--private"] if args.private else []),
|
| 168 |
+
flavor="cpu-upgrade",
|
| 169 |
+
timeout="30m",
|
| 170 |
+
secrets={"HF_TOKEN": token},
|
| 171 |
+
labels={"embedding-fleet-run": run_id, "role": "consolidate"},
|
| 172 |
+
token=token,
|
| 173 |
+
)
|
| 174 |
+
logger.info(f"Consolidation job {job.id} (cpu-upgrade) — merges shards → {args.output_dataset}")
|
| 175 |
+
return job
|
| 176 |
+
|
| 177 |
+
# --- attach-to-existing-run paths ---
|
| 178 |
+
if args.retry_rank is not None:
|
| 179 |
+
manifest = read_manifest(args.run_id)
|
| 180 |
+
if not 0 <= args.retry_rank < manifest["num_shards"]:
|
| 181 |
+
p.error(f"--retry-rank must be in [0, {manifest['num_shards']}) for run {args.run_id}")
|
| 182 |
+
logger.info(f"Re-spawning rank {args.retry_rank} of run {args.run_id} (config from manifest)")
|
| 183 |
+
job = spawn_worker(args.retry_rank, manifest)
|
| 184 |
+
info = wait_for_job(job.id, token=token)
|
| 185 |
+
if info.status.stage != JobStage.COMPLETED:
|
| 186 |
+
logger.error(f"Retry of rank {args.retry_rank} did not complete "
|
| 187 |
+
f"(stage={info.status.stage}, job {job.id}).")
|
| 188 |
+
sys.exit(1)
|
| 189 |
+
logger.info("Retry completed; run --consolidate-only when all shards are done.")
|
| 190 |
+
return
|
| 191 |
+
|
| 192 |
+
if args.consolidate_only:
|
| 193 |
+
job = spawn_consolidator(args.run_id)
|
| 194 |
+
info = wait_for_job(job.id, token=token)
|
| 195 |
+
sys.exit(0 if info.status.stage == JobStage.COMPLETED else 1)
|
| 196 |
+
|
| 197 |
+
# --- fresh run ---
|
| 198 |
+
rows_total = args.rows_total or rows_in_split(args.input_dataset, args.config, args.split)
|
| 199 |
+
if rows_total is None:
|
| 200 |
+
p.error("Couldn't determine the split's row count — pass --rows-total.")
|
| 201 |
+
if args.max_samples:
|
| 202 |
+
rows_total = min(rows_total, args.max_samples)
|
| 203 |
+
if args.num_shards > rows_total:
|
| 204 |
+
p.error(f"--num-shards {args.num_shards} exceeds the row count ({rows_total}) — "
|
| 205 |
+
f"some shards would be empty.")
|
| 206 |
+
|
| 207 |
+
run_id = time.strftime("%Y%m%d-%H%M%S") + "-" + pysecrets.token_hex(3)
|
| 208 |
+
create_bucket(bucket, private=True, exist_ok=True, token=token)
|
| 209 |
+
|
| 210 |
+
manifest = {
|
| 211 |
+
"run_id": run_id,
|
| 212 |
+
"input_dataset": args.input_dataset,
|
| 213 |
+
"output_dataset": args.output_dataset,
|
| 214 |
+
"model": args.model,
|
| 215 |
+
"column": args.column,
|
| 216 |
+
"split": args.split,
|
| 217 |
+
"config": args.config,
|
| 218 |
+
"max_samples": args.max_samples,
|
| 219 |
+
"num_shards": args.num_shards,
|
| 220 |
+
"rows_total": rows_total,
|
| 221 |
+
"flavor": args.flavor,
|
| 222 |
+
"timeout": args.timeout,
|
| 223 |
+
"private": args.private,
|
| 224 |
+
"embed_args": list(args.embed_args),
|
| 225 |
+
"started_at": time.time(),
|
| 226 |
+
"job_ids": [],
|
| 227 |
+
}
|
| 228 |
+
put_json(bucket, f"runs/{run_id}/run.json", manifest, token=token)
|
| 229 |
+
logger.info(f"Run {run_id}: {rows_total:,} rows → {args.num_shards} shards "
|
| 230 |
+
f"(~{rows_total // args.num_shards:,} rows each) on {args.flavor}")
|
| 231 |
+
|
| 232 |
+
jobs = [spawn_worker(rank, manifest) for rank in range(args.num_shards)]
|
| 233 |
+
manifest["job_ids"] = [j.id for j in jobs]
|
| 234 |
+
put_json(bucket, f"runs/{run_id}/run.json", manifest, token=token)
|
| 235 |
+
|
| 236 |
+
logger.info(f"Manifest: hf://buckets/{bucket}/runs/{run_id}/run.json")
|
| 237 |
+
logger.info(f"Dashboard: https://huggingface.co/spaces/davanstrien/embedding-fleet-dashboard?run={run_id}")
|
| 238 |
+
|
| 239 |
+
if args.no_wait:
|
| 240 |
+
logger.info(f"--no-wait: consolidate later with --run-id {run_id} --consolidate-only")
|
| 241 |
+
return
|
| 242 |
+
|
| 243 |
+
logger.info("Waiting for workers…")
|
| 244 |
+
infos = wait_for_job([j.id for j in jobs], token=token)
|
| 245 |
+
failed = [(rank, j.id) for rank, (j, i) in enumerate(zip(jobs, infos))
|
| 246 |
+
if i.status.stage != JobStage.COMPLETED]
|
| 247 |
+
if failed:
|
| 248 |
+
logger.error(f"{len(failed)} worker(s) did not complete: {failed}")
|
| 249 |
+
logger.error(f"Re-run each with --run-id {run_id} --retry-rank <rank>, then --consolidate-only.")
|
| 250 |
+
sys.exit(1)
|
| 251 |
+
|
| 252 |
+
job = spawn_consolidator(run_id)
|
| 253 |
+
info = wait_for_job(job.id, token=token)
|
| 254 |
+
if info.status.stage != JobStage.COMPLETED:
|
| 255 |
+
logger.error(f"Consolidation failed (job {job.id}); retry with --consolidate-only --run-id {run_id}")
|
| 256 |
+
sys.exit(1)
|
| 257 |
+
logger.info(f"✅ https://huggingface.co/datasets/{args.output_dataset}")
|
| 258 |
+
|
| 259 |
+
|
| 260 |
+
if __name__ == "__main__":
|
| 261 |
+
main()
|