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README.md
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## Dataset details:-
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- This dataset is the final version of anchor(query)-positive(chunk) pair data w.r.t fine tuning embedding model for clinical trials dataset.
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- It includes best of both ***<u> 4 anchors-consolidated positive chunk/nctId dataset-->[first dataset](https://huggingface.co/datasets/vab46/Clinical_trials_anchor-positive-pairs_EmbeddingModel-data)
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***<u>5 anchors-3 positive chunk/nctId--->[Second dataset](https://huggingface.co/datasets/vab46/Clinical_trials_anchor-positive-pairs_EmbeddingModel-data2)
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- The 1st dataset(consolidated *title +summary+ inclusion criteria* chunk) suffered with pre-processing bottlenecks :-
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1. rendering huge chunks upto 15k characeters.
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2. missing on certain specific corner cases of inclusion-exclusion segregation.
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- All these along with other amend mentioned in [2nd dataset readme.md](https://huggingface.co/datasets/vab46/Clinical_trials_anchor-positive-pairs_EmbeddingModel-data2) helped
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base results to advance.
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1.
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2.
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tending 25% and 40%***) which can be observed in details in metrics at [readme.md of final model](https://huggingface.co/vab46/nomic-embed-text-v1.5_Clinical-Trials_Matryoshka_final)
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## Dataset details:-
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| 38 |
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- This dataset is the final version of anchor(query)-positive(chunk) pair data w.r.t fine tuning embedding model for clinical trials dataset.
|
| 40 |
+
- It includes best of both ***<u> 4 anchors-consolidated positive chunk/nctId dataset</u>-->[first dataset](https://huggingface.co/datasets/vab46/Clinical_trials_anchor-positive-pairs_EmbeddingModel-data)*** and
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***<u>5 anchors-3 positive chunk/nctId</u>--->[Second dataset](https://huggingface.co/datasets/vab46/Clinical_trials_anchor-positive-pairs_EmbeddingModel-data2)***.
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- The 1st dataset(consolidated *title +summary+ inclusion criteria* chunk) suffered with pre-processing bottlenecks :-
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| 43 |
1. rendering huge chunks upto 15k characeters.
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| 44 |
2. missing on certain specific corner cases of inclusion-exclusion segregation.
|
|
|
|
| 59 |
- All these along with other amend mentioned in [2nd dataset readme.md](https://huggingface.co/datasets/vab46/Clinical_trials_anchor-positive-pairs_EmbeddingModel-data2) helped
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base results to advance.
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1. **ndcg@10 being 0.40-0.52** on mastroyska nested dimensions 64D- 768D of "nomic-ai/nomic-embed-text-v1.5 base model".
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2. The initial ***sequential evaluator score(on 5 diff mashtroyska embeddings) ~0.405***. Both these values improved significantly(***avg @ndcg@10 & seq_eval score
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tending 25% and 40%***) which can be observed in details in metrics at [readme.md of final model](https://huggingface.co/vab46/nomic-embed-text-v1.5_Clinical-Trials_Matryoshka_final).
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