sample,reporter,target_gene,method,target_r,median_bg,mean_bg,sd_bg,q05_bg,q25_bg,q75_bg,q95_bg GSE295703_WER,WER_reporter,WER,Raw counts,0.9060125208316274,0.20415208065512175,0.2055306663479606,0.15266374453270343,-0.01071326380155696,0.06796471551881464,0.3282263577416859,0.454403446952896 GSE295703_WER,WER_reporter,WER,log10(CP10K + 1),0.4979658598035766,0.018058212130902647,0.026372876385945238,0.05459112835026753,-0.048640378993120174,-0.006068291150363098,0.04668543452655273,0.12367879805142233 GSE295703_WER,WER_reporter,WER,"scVI (learned library, softmax)",0.9541022181510925,0.3179115056991577,0.28416141867637634,0.2865716218948364,-0.2447001188993454,0.07571424543857574,0.5211741924285889,0.6733669638633728 GSE295703_WER,WER_reporter,WER,"scVI (observed library, softplus)",0.8883614540100098,0.9098441004753113,0.831846296787262,0.2143016755580902,0.45284271240234375,0.7548729777336121,0.967197835445404,0.9926060438156128 GSE295703_WER,WER_reporter,WER,"scVI (observed library, softmax)",0.9374336004257202,-0.00358114973641932,0.01277292799204588,0.3049326241016388,-0.4626423120498657,-0.240115225315094,0.2774695158004761,0.4929717481136322 GSE295703_CORTEX,CORTEX_reporter,CORTEX,Raw counts,0.1474873012093669,0.05290158446205,0.09049127214783992,0.10843830983232404,-0.01097732399735626,-0.0017750890637691962,0.15185966745371293,0.3093967907842431 GSE295703_CORTEX,CORTEX_reporter,CORTEX,log10(CP10K + 1),0.03890827839623341,-0.004045283186204661,0.0042620909700064455,0.0300037324688635,-0.03208052685018536,-0.011578295285970026,0.014175660304564278,0.06388557825415077 GSE295703_CORTEX,CORTEX_reporter,CORTEX,"scVI (learned library, softmax)",0.5193893909454346,0.15418480336666107,0.16944023966789246,0.20413514971733093,-0.15189455449581146,0.027311526238918304,0.3126731514930725,0.5173298120498657 GSE295703_CORTEX,CORTEX_reporter,CORTEX,"scVI (observed library, softplus)",0.8818941712379456,0.8476880788803101,0.762551486492157,0.192972794175148,0.37381020188331604,0.6344087719917297,0.9015470147132874,0.9690907001495361 GSE295703_CORTEX,CORTEX_reporter,CORTEX,"scVI (observed library, softmax)",0.3874843418598175,-0.04918023198843002,-0.04205764830112457,0.2624288499355316,-0.4429626166820526,-0.25217121839523315,0.15284793078899384,0.41888928413391113 GSE295703_SCR,SCR_reporter,SCR,Raw counts,0.3006709637492125,0.06860176119715855,0.08158058705762274,0.0716698184702723,-0.0032958853106582276,0.019792705964933283,0.12327141156685316,0.2167550393799483 GSE295703_SCR,SCR_reporter,SCR,log10(CP10K + 1),0.14738485166547283,-0.002136255025664494,0.0027648556656978177,0.01817652808770364,-0.018953911023366986,-0.006531971125371817,0.009316100838130517,0.034871205508049265 GSE295703_SCR,SCR_reporter,SCR,"scVI (learned library, softmax)",0.8430137634277344,0.2975810170173645,0.2625686526298523,0.2306269109249115,-0.18537338078022003,0.1280175745487213,0.4270647466182709,0.569892942905426 GSE295703_SCR,SCR_reporter,SCR,"scVI (observed library, softplus)",0.9883589744567871,0.8988534212112427,0.8343878388404846,0.19298504292964935,0.4626074433326721,0.7714055776596069,0.9704818725585938,0.9973844885826111 GSE295703_SCR,SCR_reporter,SCR,"scVI (observed library, softmax)",0.7901619672775269,-0.004002154804766178,-0.0005571985384449363,0.3333633244037628,-0.5184658765792847,-0.27472221851348877,0.2663172483444214,0.5119348764419556 GSE160772,eGFP,Pdgfrb,Raw counts,0.6288454608474559,0.04289402527697292,0.06556562461084911,0.08661662307009864,-0.025402727126080337,0.005794255051284038,0.10397761730576513,0.23803230885300913 GSE160772,eGFP,Pdgfrb,log10(CP10K + 1),0.4262728202364574,0.005054843994689677,0.007779604030406865,0.05657428755181915,-0.06373856702961844,-0.01906529563400903,0.029741441168845043,0.09600999301397864 GSE160772,eGFP,Pdgfrb,"scVI (learned library, softmax)",0.8468254804611206,0.11970829963684082,0.10157043486833572,0.4482784569263458,-0.6491554975509644,-0.24274706840515137,0.4840911626815796,0.7488016486167908 GSE160772,eGFP,Pdgfrb,"scVI (observed library, softplus)",0.8742009401321411,0.27131330966949463,0.26977816224098206,0.3294838070869446,-0.3587287366390228,0.06782397627830505,0.488469660282135,0.8249210119247437 GSE160772,eGFP,Pdgfrb,"scVI (observed library, softmax)",0.8134779930114746,0.1529906690120697,0.0877380520105362,0.4217251241207123,-0.666635274887085,-0.22054146230220795,0.44189709424972534,0.6743938326835632 GSE198556_control_epithelial,eGFP,Pdgfrb,Raw counts,0.8215629964283826,-0.0004503439245101411,0.013446413730159328,0.03535246109395729,-0.002408449948243217,-0.000992646409470678,0.015806060904980275,0.05920563442580213 GSE198556_control_epithelial,eGFP,Pdgfrb,log10(CP10K + 1),0.15440318051837335,-0.0004633703851932104,0.00045007026644100577,0.008242315683823434,-0.0020725142928400366,-0.0009460932472522053,-0.00022899291730037516,0.0037100702410361526 GSE198556_control_epithelial,eGFP,Pdgfrb,"scVI (learned library, softmax)",0.8256579637527466,0.351363867521286,0.3454095125198364,0.2696398198604584,-0.1269112527370453,0.1851983517408371,0.5412723422050476,0.7493412494659424 GSE198556_control_epithelial,eGFP,Pdgfrb,"scVI (observed library, softplus)",0.14370475709438324,0.3917469382286072,0.36092889308929443,0.18492497503757477,-0.013275785371661186,0.27061140537261963,0.4851228594779968,0.6343930959701538 GSE198556_control_epithelial,eGFP,Pdgfrb,"scVI (observed library, softmax)",0.7192467451095581,-0.23010903596878052,-0.21263127028942108,0.284233421087265,-0.6344771385192871,-0.43341636657714844,-0.0138187101110816,0.3039645254611969 GSE198556_24hrs_mesenchyme,eGFP,Pdgfrb,Raw counts,0.5920478480804374,0.14995600955098842,0.17087292375529628,0.11744980230474258,0.013670913177005462,0.08254778003220864,0.2409614767419388,0.3859757898288666 GSE198556_24hrs_mesenchyme,eGFP,Pdgfrb,log10(CP10K + 1),0.4302149008001759,0.07660839732383112,0.09107366857020412,0.07351054511840219,-0.0041291078681501775,0.036174283573547794,0.13540721136880823,0.23534056069601017 GSE198556_24hrs_mesenchyme,eGFP,Pdgfrb,"scVI (learned library, softmax)",0.4507290720939636,0.014468985609710217,0.041364092379808426,0.3565171957015991,-0.5188298225402832,-0.2192493975162506,0.3159141540527344,0.6281234622001648 GSE198556_24hrs_mesenchyme,eGFP,Pdgfrb,"scVI (observed library, softplus)",0.9695115685462952,0.9773787260055542,0.9075724482536316,0.2717941105365753,0.5387893319129944,0.956878125667572,0.9921413660049438,0.9981566071510315 GSE198556_24hrs_mesenchyme,eGFP,Pdgfrb,"scVI (observed library, softmax)",0.8122614622116089,0.5750279426574707,0.49775755405426025,0.3103157579898834,-0.14615826308727264,0.325553834438324,0.7322725057601929,0.8557142615318298 GSE198556_48hrs_mesenchyme,eGFP,Pdgfrb,Raw counts,0.7354054637300546,0.05683749153945768,0.09476520915436357,0.09795289319969401,0.0008641400860860986,0.018573566802243535,0.1473248470802077,0.2966519697449223 GSE198556_48hrs_mesenchyme,eGFP,Pdgfrb,log10(CP10K + 1),0.3843764083605527,0.0364136958100314,0.06373277970409058,0.07206447231357806,-0.007747949641997116,0.012863232074488645,0.09711325291743211,0.2188868330812967 GSE198556_48hrs_mesenchyme,eGFP,Pdgfrb,"scVI (learned library, softmax)",0.5641942024230957,-0.07065270096063614,-0.022848865017294884,0.439546138048172,-0.6292688846588135,-0.4190329611301422,0.34660014510154724,0.7250769734382629 GSE198556_48hrs_mesenchyme,eGFP,Pdgfrb,"scVI (observed library, softplus)",0.5774148106575012,0.6759988069534302,0.6133950352668762,0.25659188628196716,0.06297450512647629,0.5339003801345825,0.7746665477752686,0.9171670079231262 GSE198556_48hrs_mesenchyme,eGFP,Pdgfrb,"scVI (observed library, softmax)",0.5262625217437744,0.06750085949897766,0.1034659594297409,0.4205860197544098,-0.548989474773407,-0.23510785400867462,0.46186721324920654,0.766492486000061 GSE198556_48hrs_epithelial,eGFP,Pdgfrb,Raw counts,0.6713571202345912,-0.00047980743425661836,0.013833070135192981,0.03496611958604819,-0.0029594681485521673,-0.0013204477508015429,0.018341388888623463,0.05568301256193985 GSE198556_48hrs_epithelial,eGFP,Pdgfrb,log10(CP10K + 1),0.3420710709740295,-0.0009618876402259268,0.0027363904692594733,0.011140140675706295,-0.004831431099601776,-0.0019904951925783735,0.0040805308786095364,0.017863574222274553 GSE198556_48hrs_epithelial,eGFP,Pdgfrb,"scVI (learned library, softmax)",0.936994731426239,0.16595104336738586,0.18149860203266144,0.25099748373031616,-0.21911820769309998,0.006083253305405378,0.33676281571388245,0.6607710719108582 GSE198556_48hrs_epithelial,eGFP,Pdgfrb,"scVI (observed library, softplus)",0.9750193357467651,0.9292590618133545,0.8374306559562683,0.2812400758266449,0.14025159180164337,0.868929922580719,0.9627664685249329,0.9825999736785889 GSE198556_48hrs_epithelial,eGFP,Pdgfrb,"scVI (observed library, softmax)",0.8665398359298706,-0.22803686559200287,-0.1645357459783554,0.3032326400279999,-0.5449506640434265,-0.383036732673645,-0.009141843765974045,0.47654664516448975 GSE181864,eGFP,Rorc,Raw counts,0.09127714622998187,0.018885518316172314,0.024337165933138033,0.026445077559951315,-0.007580852441776791,0.004148479698793006,0.03942202707291334,0.07735168282961705 GSE181864,eGFP,Rorc,log10(CP10K + 1),0.08527926937924728,0.006275649863403706,0.008802480700649066,0.016192138607144534,-0.009447778785477987,-0.0038199927142575953,0.017234176462965455,0.037901360873422614 GSE181864,eGFP,Rorc,"scVI (learned library, softmax)",0.16055640578269958,0.3646712005138397,0.31328094005584717,0.31747084856033325,-0.2812318503856659,0.11192276328802109,0.5662794709205627,0.7442215085029602 GSE181864,eGFP,Rorc,"scVI (observed library, softplus)",0.34390467405319214,0.6515038013458252,0.6603934168815613,0.1961338073015213,0.36939316987991333,0.49802401661872864,0.8088189959526062,0.9794396758079529 GSE181864,eGFP,Rorc,"scVI (observed library, softmax)",-0.3245011270046234,0.008310582488775253,-0.008642786182463169,0.38927796483039856,-0.651206374168396,-0.3106257915496826,0.2909574806690216,0.6155896782875061 GSE229976_unstimulated,eGFP,Il23r,Raw counts,0.14469360592496927,0.018255323640492906,0.02672383611139018,0.03084344064400661,-0.006803166094294456,0.0045644722999754195,0.04256543155812547,0.0904429668063401 GSE229976_unstimulated,eGFP,Il23r,log10(CP10K + 1),0.0794484231723423,0.007563361632391087,0.00967532189085926,0.014656803198782289,-0.007158515101693311,-0.002037520443961908,0.017441665722194712,0.03937007298612266 GSE229976_unstimulated,eGFP,Il23r,"scVI (learned library, softmax)",0.6740114688873291,0.2771112024784088,0.2686931788921356,0.24372471868991852,-0.15828579664230347,0.09361070394515991,0.4447609484195709,0.6653347015380859 GSE229976_unstimulated,eGFP,Il23r,"scVI (observed library, softplus)",0.9495291709899902,0.9358032941818237,0.8927893042564392,0.1513018012046814,0.6895337104797363,0.8596698641777039,0.9719953536987305,0.9899493455886841 GSE229976_unstimulated,eGFP,Il23r,"scVI (observed library, softmax)",0.7796140909194946,0.2732142210006714,0.24166351556777954,0.33089834451675415,-0.32892802357673645,0.024301569908857346,0.495887815952301,0.7247913479804993 GSE229976_stimulated,eGFP,Il23r,Raw counts,0.19823652251974655,0.028067598543979513,0.040550815339583636,0.04338981656688465,-0.004592862028504066,0.010570000358997717,0.05886925891500707,0.13760401508172726 GSE229976_stimulated,eGFP,Il23r,log10(CP10K + 1),0.0823925590861328,0.009207284114170431,0.01274874912666004,0.01629893246450276,-0.007048358311876156,0.0006732070260226373,0.02258980912151843,0.044713372215727326 GSE229976_stimulated,eGFP,Il23r,"scVI (learned library, softmax)",0.7931545972824097,0.31049779057502747,0.2798919081687927,0.29568371176719666,-0.25981175899505615,0.07764945179224014,0.5093352794647217,0.6920558214187622 GSE229976_stimulated,eGFP,Il23r,"scVI (observed library, softplus)",0.5063269138336182,0.6345090866088867,0.6649731397628784,0.1711089313030243,0.4942443370819092,0.542186975479126,0.7949831485748291,0.9516505002975464 GSE229976_stimulated,eGFP,Il23r,"scVI (observed library, softmax)",0.8095455765724182,0.34771376848220825,0.26950597763061523,0.3784116208553314,-0.5493326783180237,0.055173203349113464,0.550250768661499,0.76630699634552 GSE296504,DsRed,Cspg4,Raw counts,0.5262632656907359,0.015847844081670705,0.03145362732437401,0.05584556893506279,-0.02040571164923523,-0.005101650537358815,0.05023190963827902,0.1424749470361849 GSE296504,DsRed,Cspg4,log10(CP10K + 1),0.5090670458748798,0.016676829067453075,0.03574988021601107,0.07455798478672565,-0.04601183943509148,-0.011893580219400735,0.070660261942421,0.1677236200730493 GSE296504,eGFP,Cx3cr1,Raw counts,0.4324096946463236,0.028843435728406842,0.05141738028511611,0.07418202440217395,-0.031558802661547605,-0.002346693589486599,0.08676204590864718,0.2003958326208025 GSE296504,eGFP,Cx3cr1,log10(CP10K + 1),0.4285349261013174,0.014070558279475336,0.028822677960771356,0.070565336093933,-0.050476337144605775,-0.012787519681743251,0.05032256203579759,0.16783704336125768 GSE296504,DsRed,Cspg4,"scVI (learned library, softmax)",0.9259375333786011,0.13759461045265198,0.14456476271152496,0.3893340229988098,-0.5133621096611023,-0.1145300567150116,0.43471235036849976,0.7737351059913635 GSE296504,DsRed,Cspg4,"scVI (observed library, softplus)",0.9712671637535095,0.8836971521377563,0.8841134905815125,0.02824213355779648,0.8448444604873657,0.8777738809585571,0.8897086381912231,0.930220901966095 GSE296504,DsRed,Cspg4,"scVI (observed library, softmax)",0.8748378753662109,-0.094830721616745,-0.035740457475185394,0.37805214524269104,-0.6004549264907837,-0.31847095489501953,0.2068818211555481,0.6991150379180908 GSE296504,eGFP,Cx3cr1,"scVI (learned library, softmax)",0.9281642436981201,0.06643153727054596,0.06355371326208115,0.3780694007873535,-0.5496055483818054,-0.24196453392505646,0.3473745882511139,0.6677291393280029 GSE296504,eGFP,Cx3cr1,"scVI (observed library, softplus)",0.9984520077705383,0.9840150475502014,0.9808165431022644,0.01899149641394615,0.9667892456054688,0.9793774485588074,0.9867896437644958,0.9950972199440002 GSE296504,eGFP,Cx3cr1,"scVI (observed library, softmax)",0.9121332168579102,-0.04892433434724808,-0.0348038375377655,0.38843873143196106,-0.6456064581871033,-0.3268212378025055,0.21105527877807617,0.631145715713501 GSE316394_BACHD_1,eGFP,Dlx1,Raw counts,0.10575218397648817,0.01686043598773479,0.02672749617845608,0.030300045960369077,-0.006827333630644677,0.004926269139820217,0.041711085066337236,0.09009184384404385 GSE316394_BACHD_1,eGFP,Dlx1,log10(CP10K + 1),0.03538734972582877,0.0024770776097826795,0.004293860607589881,0.011324790788088337,-0.010869440736372617,-0.004061791143966841,0.011799122435996717,0.02511431575973737 GSE316394_BACHD_1,eGFP,Dlx1,"scVI (learned library, softmax)",0.37562042474746704,0.14905445277690887,0.11025424301624298,0.4400704801082611,-0.6533169150352478,-0.24715235829353333,0.4879567623138428,0.7338001728057861 GSE316394_BACHD_1,eGFP,Dlx1,"scVI (observed library, softplus)",0.8908047080039978,0.8718602657318115,0.7787638902664185,0.2248830795288086,0.3066163659095764,0.725736141204834,0.9234769344329834,0.9609944224357605 GSE316394_BACHD_1,eGFP,Dlx1,"scVI (observed library, softmax)",0.5230597257614136,0.2648695707321167,0.2768537700176239,0.33884844183921814,-0.2869824171066284,0.01689114049077034,0.5520521402359009,0.817042350769043 GSE316394_BACHD_2,eGFP,Dlx1,Raw counts,0.08760541156146885,0.018330065490666,0.025722412074505437,0.027751627258442928,-0.005833294094195813,0.006117133301951067,0.039492136297249604,0.08079648014206922 GSE316394_BACHD_2,eGFP,Dlx1,log10(CP10K + 1),0.0329359468577159,0.0033475100009873558,0.004193606972767875,0.010431271691374686,-0.01068054908984687,-0.0035474834613941192,0.010664787423887746,0.023342428023365017 GSE316394_BACHD_2,eGFP,Dlx1,"scVI (learned library, softmax)",0.34029415249824524,0.180509552359581,0.12355242669582367,0.4185798168182373,-0.6305914521217346,-0.19213199615478516,0.47564512491226196,0.6905733942985535 GSE316394_BACHD_2,eGFP,Dlx1,"scVI (observed library, softplus)",0.29650551080703735,0.6270691156387329,0.5942493081092834,0.18076097965240479,0.2312188595533371,0.5236119031906128,0.7121168375015259,0.8011216521263123 GSE316394_BACHD_2,eGFP,Dlx1,"scVI (observed library, softmax)",0.39227062463760376,0.3357076048851013,0.31486037373542786,0.3399808704853058,-0.27343350648880005,0.05690065026283264,0.6023962497711182,0.7950881123542786 GSE316394_WT_1,eGFP,Dlx1,Raw counts,0.14580138956442987,0.010969157532924236,0.018096346580967586,0.02658649713863493,-0.012236357785735478,-0.0018261279129477487,0.031164246119762068,0.07288764719368891 GSE316394_WT_1,eGFP,Dlx1,log10(CP10K + 1),0.11242298266653432,0.003181732308749459,0.008280169825324592,0.02205208819769482,-0.016884035309002864,-0.006952175909686669,0.017487230081103852,0.054786770402795684 GSE316394_WT_1,eGFP,Dlx1,"scVI (learned library, softmax)",0.880652666091919,0.2687114477157593,0.18675217032432556,0.4333815574645996,-0.560551106929779,-0.16980426013469696,0.5815002918243408,0.761960506439209 GSE316394_WT_1,eGFP,Dlx1,"scVI (observed library, softplus)",0.7365620732307434,0.7694485187530518,0.5867037773132324,0.3877416253089905,-0.26236701011657715,0.34697121381759644,0.8855130672454834,0.9328542351722717 GSE316394_WT_1,eGFP,Dlx1,"scVI (observed library, softmax)",0.8927597999572754,0.0875580757856369,0.054244376718997955,0.40457746386528015,-0.6308141350746155,-0.2722014784812927,0.4030764102935791,0.6444286108016968 GSE316394_WT_2,eGFP,Dlx1,Raw counts,0.10215374975946077,0.007359419220488466,0.009358241350480825,0.016227131369880705,-0.010541714040408,-0.0018356488285677707,0.01693544371094535,0.0414895419801187 GSE316394_WT_2,eGFP,Dlx1,log10(CP10K + 1),0.1025093814250986,0.0006016370665168037,0.0029461779803958365,0.01393544648057114,-0.013563025230339696,-0.006146085591441184,0.009387369424178135,0.027102412402288056 GSE316394_WT_2,eGFP,Dlx1,"scVI (learned library, softmax)",0.9134891033172607,0.06624727696180344,0.04533742368221283,0.322556734085083,-0.5039944648742676,-0.18874073028564453,0.2845156788825989,0.568200409412384 GSE316394_WT_2,eGFP,Dlx1,"scVI (observed library, softplus)",0.1559944748878479,0.7485290765762329,0.6692042946815491,0.28816282749176025,0.12719742953777313,0.4442836046218872,0.9214891791343689,0.9887628555297852 GSE316394_WT_2,eGFP,Dlx1,"scVI (observed library, softmax)",0.9075029492378235,0.1385953724384308,0.08599479496479034,0.34160012006759644,-0.5385761260986328,-0.14548960328102112,0.33331894874572754,0.596950113773346 GSE319345_Ms802_Sham,eGFP,Sox9,Raw counts,0.32427848407777515,0.03997726977611486,0.04584716877439429,0.057750607214185734,-0.04182625472528407,0.010545616358520625,0.07590059600215143,0.15038482263517772 GSE319345_Ms802_Sham,eGFP,Sox9,log10(CP10K + 1),0.1629624357576895,0.00530484160279545,0.00021998869051729963,0.04485605629534297,-0.08412385535329088,-0.01628721537783484,0.02406705108091852,0.05447402469080875 GSE319345_Ms802_Sham,eGFP,Sox9,"scVI (learned library, softmax)",0.8194599151611328,0.18914209306240082,0.15129907429218292,0.3932467997074127,-0.5692959427833557,-0.12353814393281937,0.44604408740997314,0.7594310641288757 GSE319345_Ms802_Sham,eGFP,Sox9,"scVI (observed library, softplus)",0.9816051721572876,0.9479358196258545,0.917097806930542,0.1353825181722641,0.7941619753837585,0.9040514826774597,0.971638023853302,0.9897186756134033 GSE319345_Ms802_Sham,eGFP,Sox9,"scVI (observed library, softmax)",0.7335798740386963,0.11034715175628662,0.10170416533946991,0.3175514340400696,-0.4344663918018341,-0.1241956278681755,0.3089072108268738,0.6609516739845276 GSE319345_Ms877_Sham,eGFP,Sox9,Raw counts,0.358394560190509,0.047573112408868905,0.05085000143274682,0.056348548344928764,-0.027472557395979872,0.015338670849532124,0.07966971264809461,0.1440090882460497 GSE319345_Ms877_Sham,eGFP,Sox9,log10(CP10K + 1),0.21703739200636862,0.008354715397799082,0.0042618031592645735,0.04043872881388936,-0.06233063294117445,-0.010957286891662431,0.024814966023189472,0.05486545327237796 GSE319345_Ms877_Sham,eGFP,Sox9,"scVI (learned library, softmax)",0.7942864894866943,0.09605240076780319,0.08793246001005173,0.42209428548812866,-0.589728057384491,-0.22568924725055695,0.40583500266075134,0.7725334167480469 GSE319345_Ms877_Sham,eGFP,Sox9,"scVI (observed library, softplus)",0.9457091093063354,0.8195359706878662,0.7678229212760925,0.1736629754304886,0.3969985842704773,0.7346814274787903,0.8799805045127869,0.9387383460998535 GSE319345_Ms877_Sham,eGFP,Sox9,"scVI (observed library, softmax)",0.7730185985565186,0.00393588375300169,0.010096583515405655,0.4052771031856537,-0.6566385626792908,-0.2885163128376007,0.265218585729599,0.7284450531005859 GSE319345_Ms805_BDL,eGFP,Sox9,Raw counts,0.37344677029382584,0.040960377463877685,0.04732036662315022,0.05364069527915886,-0.02697542380760592,0.012547414986578447,0.07544010356640556,0.13870921286952148 GSE319345_Ms805_BDL,eGFP,Sox9,log10(CP10K + 1),0.22323122466885723,0.011683346215678694,0.010271867243792483,0.03923265099351337,-0.05316361442570627,-0.008027910529138418,0.028710489396510837,0.06438244120639917 GSE319345_Ms805_BDL,eGFP,Sox9,"scVI (learned library, softmax)",0.7363921403884888,0.22666920721530914,0.18893659114837646,0.3344890773296356,-0.4446605443954468,-0.013870775699615479,0.45334362983703613,0.6493841409683228 GSE319345_Ms805_BDL,eGFP,Sox9,"scVI (observed library, softplus)",0.9751530289649963,0.9661551713943481,0.882348895072937,0.19781221449375153,0.42792901396751404,0.8845366835594177,0.9871926307678223,0.9958874583244324 GSE319345_Ms805_BDL,eGFP,Sox9,"scVI (observed library, softmax)",0.8180433511734009,0.26834291219711304,0.20664110779762268,0.3184460699558258,-0.43529143929481506,-0.004363383166491985,0.44169262051582336,0.6365761160850525 GSE319345_Ms840_BDL,eGFP,Sox9,Raw counts,0.6129908242331129,0.08428411856650728,0.12022912376543139,0.10541525130092663,0.004706360402751504,0.0379327635640545,0.18396983227458685,0.31407768886960735 GSE319345_Ms840_BDL,eGFP,Sox9,log10(CP10K + 1),0.12475755368434432,0.01826147901103338,0.02511105269792549,0.026490612693885026,-0.008638009553156023,0.007333166302421879,0.0418806028657573,0.07025537814466855 GSE319345_Ms840_BDL,eGFP,Sox9,"scVI (learned library, softmax)",0.8991703391075134,0.09790286421775818,0.09699664264917374,0.3383100926876068,-0.45264315605163574,-0.1677166074514389,0.36696553230285645,0.6148545742034912 GSE319345_Ms840_BDL,eGFP,Sox9,"scVI (observed library, softplus)",0.8585925102233887,0.7675029039382935,0.6882755756378174,0.2387191504240036,0.14958931505680084,0.6580901145935059,0.8285372853279114,0.8862109780311584 GSE319345_Ms840_BDL,eGFP,Sox9,"scVI (observed library, softmax)",0.9134787321090698,0.3571823835372925,0.2856619656085968,0.354903906583786,-0.4717358648777008,0.09504890441894531,0.5623421669006348,0.7279182076454163