Datasets:

---

valsv

/

scrna-coregulation-benchmark

like 0

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 2 new columns ({'gene_b', 'gene_a'}) and 2 missing columns ({'reporter', 'target_gene'}).

This happened while the csv dataset builder was generating data using

hf://datasets/valsv/scrna-coregulation-benchmark/pbmc_correlation_summary.csv (at revision 96a3883b8d5910f18cb058b966dcddd88f16ceb1), ['hf://datasets/valsv/scrna-coregulation-benchmark@96a3883b8d5910f18cb058b966dcddd88f16ceb1/correlation_summary.csv', 'hf://datasets/valsv/scrna-coregulation-benchmark@96a3883b8d5910f18cb058b966dcddd88f16ceb1/pbmc_correlation_summary.csv']

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1890, in _prepare_split_single
                  writer.write_table(table)
                File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 760, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2272, in table_cast
                  return cast_table_to_schema(table, schema)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              sample: string
              gene_a: string
              gene_b: string
              method: string
              target_r: double
              median_bg: double
              mean_bg: double
              sd_bg: double
              q05_bg: double
              q25_bg: double
              q75_bg: double
              q95_bg: double
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 1623
              to
              {'sample': Value('string'), 'reporter': Value('string'), 'target_gene': Value('string'), 'method': Value('string'), 'target_r': Value('float64'), 'median_bg': Value('float64'), 'mean_bg': Value('float64'), 'sd_bg': Value('float64'), 'q05_bg': Value('float64'), 'q25_bg': Value('float64'), 'q75_bg': Value('float64'), 'q95_bg': Value('float64')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1342, in compute_config_parquet_and_info_response
                  parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
                                                                        ^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 907, in stream_convert_to_parquet
                  builder._prepare_split(split_generator=splits_generators[split], file_format="parquet")
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1739, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1892, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 2 new columns ({'gene_b', 'gene_a'}) and 2 missing columns ({'reporter', 'target_gene'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/valsv/scrna-coregulation-benchmark/pbmc_correlation_summary.csv (at revision 96a3883b8d5910f18cb058b966dcddd88f16ceb1), ['hf://datasets/valsv/scrna-coregulation-benchmark@96a3883b8d5910f18cb058b966dcddd88f16ceb1/correlation_summary.csv', 'hf://datasets/valsv/scrna-coregulation-benchmark@96a3883b8d5910f18cb058b966dcddd88f16ceb1/pbmc_correlation_summary.csv']
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)