import json import os import matplotlib.pyplot as plt from matplotlib.patches import Patch from matplotlib.patches import Polygon import numpy as np from PIL import Image from pycocotools.coco import COCO from pycocotools.cocoeval import COCOeval xp_images = ["Exp6_Cam1_Stage01.jpg", "Exp6_Cam1_Stage03.jpg", "Exp6_Cam1_Stage05.jpg", "Exp17_Cam1_Stage01.jpg", "Exp17_Cam1_Stage04.jpg", "Exp17_Cam1_Stage05.jpg", "Exp30_Cam1_Stage01.jpg", "Exp30_Cam1_Stage05.jpg", "Exp30_Cam1_Stage07.jpg", "Exp21_Cam2_Stage01.jpg", "Exp21_Cam2_Stage03.jpg", "Exp21_Cam2_Stage05.jpg", "Exp18_Cam3_Stage01.jpg", "Exp18_Cam3_Stage04.jpg", "Exp18_Cam3_Stage06.jpg"] coco_gt_path = "instance_segmentation/ground_truth_15imgs_coco.json" multiannotation_path = "instance_segmentation/multiannotator_15imgs.json" img_folder = "images" binary_folder = "binary_segmentation" if __name__ == "__main__": coco = COCO(coco_gt_path) # Sanity check: display the ground truth of one image img_info = coco.imgs[1] anns = coco.loadAnns(coco.getAnnIds(imgIds=img_info["id"])) print(f"{img_info['file_name']}: {len(anns)} annotations") plt.figure(figsize=(12, 8)) plt.imshow(Image.open(os.path.join(img_folder, img_info["file_name"]))) coco.showAnns(anns, draw_bbox=True) plt.title(img_info["file_name"]) plt.axis("off") plt.tight_layout() plt.savefig("example_gt.png", dpi=100) plt.show() # Same image, annotated by one of the annotators with open(multiannotation_path) as f: multiannotations = json.load(f) annotation = multiannotations[img_info["file_name"]][1] # index 1 is the second annotator, index 0 is the first annotator, etc print(f"{img_info['file_name']}: annotator {annotation['user_id']}, " f"{len(annotation['polygons'])} polygons") fig, ax = plt.subplots(figsize=(12, 8)) ax.imshow(Image.open(os.path.join(img_folder, img_info["file_name"]))) for poly in annotation["polygons"]: pts = [(p["x"], p["y"]) for p in poly["polygon_pts"]] ax.add_patch(Polygon(pts, closed=True, fill=True, alpha=0.4, facecolor="tab:orange", edgecolor="tab:orange", linewidth=2)) ax.set_title(f"{img_info['file_name']} - annotator {annotation['user_id']}") ax.axis("off") fig.tight_layout() fig.savefig("example_annotator.png", dpi=100) plt.show() # Evaluate the annotator against the ground truth with COCO metrics (this image only). # User-reported confidence is used as the bbox/segmentation score. detections = [] for poly in annotation["polygons"]: flat = [c for p in poly["polygon_pts"] for c in (p["x"], p["y"])] xs, ys = flat[0::2], flat[1::2] detections.append({ "image_id": img_info["id"], "category_id": 1, "segmentation": [flat], "bbox": [min(xs), min(ys), max(xs) - min(xs), max(ys) - min(ys)], "score": poly.get("polygon_confidence") or 1.0, }) coco_dt = coco.loadRes(detections) for iou_type in ("segm", "bbox"): print(f"\n=== {iou_type} ===") coco_eval = COCOeval(coco, coco_dt, iou_type) coco_eval.params.imgIds = [img_info["id"]] coco_eval.evaluate() coco_eval.accumulate() coco_eval.summarize() # Binary (foreground/background) IoU between the annotator and ground truth masks name = img_info["file_name"] gt_mask = np.array(Image.open(os.path.join(binary_folder, f"{name}_GT.png"))).astype(bool) annotator_mask = np.array( Image.open(os.path.join(binary_folder, f"{name}_{annotation['user_id']}.png"))).astype(bool) intersection = np.logical_and(gt_mask, annotator_mask).sum() union = np.logical_or(gt_mask, annotator_mask).sum() print(f"\nBinary IoU ({name}, annotator {annotation['user_id']}): {intersection / union:.3f}") # Overlay both masks on the image: agreement in green, GT only in red, annotator only in blue overlay = np.zeros((*gt_mask.shape, 4)) overlay[gt_mask & annotator_mask] = (0, 0.8, 0, 0.5) overlay[gt_mask & ~annotator_mask] = (1, 0, 0, 0.5) overlay[~gt_mask & annotator_mask] = (0, 0.3, 1, 0.5) fig, ax = plt.subplots(figsize=(12, 8)) ax.imshow(Image.open(os.path.join(img_folder, name))) ax.imshow(overlay) ax.legend(handles=[Patch(color=(0, 0.8, 0), label="both"), Patch(color=(1, 0, 0), label="GT only"), Patch(color=(0, 0.3, 1), label="annotator only")], loc="lower right") ax.set_title(f"{name} - GT vs annotator {annotation['user_id']} (IoU {intersection / union:.3f})") ax.axis("off") fig.tight_layout() fig.savefig("example_binary_masks.png", dpi=100) plt.show()