import os import argparse from pathlib import Path import scipy as sp import matplotlib.pyplot as plt def get_markersize(matrix_size: int, nnz: int) -> float: """ Calculate the marker size for the spy plot based on the matrix size. """ density = nnz / (matrix_size * matrix_size) print(f" - Density of the matrix: {density}") print(f" - Number of non-zero elements: {nnz}") print(f" - Size of the matrix: {matrix_size} x {matrix_size}") if matrix_size < 1000: fixed_ratio = 0.01 / 10 else: fixed_ratio = 0.01 / 10000 markersize = fixed_ratio * matrix_size return markersize def spy(matrix: sp.sparse.coo_matrix, file_name: str) -> None: """ Visualize the sparsity pattern of a sparse matrix using matplotlib. """ markersize = get_markersize(matrix.shape[0], matrix.nnz) plt.figure(figsize=(10, 10)) plt.spy(matrix, markersize=markersize, color="teal") # plt.spy(matrix, markersize=1) plt.title(f"spyplot: {file_name}") plt.tight_layout() plt.show() if __name__ == "__main__": parser = argparse.ArgumentParser(description="Matrix Market utilities") parser.add_argument("command", choices=["spy"], help="Command to execute") parser.add_argument("input_file", help="Input file path") args = parser.parse_args() file_name = os.path.splitext(os.path.basename(args.input_file))[0] print(f"file_name: {file_name}") if args.command == "spy": print("Visualizing sparsity pattern:") matrix_coo = sp.sparse.load_npz(args.input_file).tocoo() print(f" - Loaded NPZ file from: {args.input_file}") spy(matrix_coo, file_name)