"""Core routines for reproducing arXiv:2601.06014 (Taing & Levin, ICML 2026): "On the Effect of Misspecifying the Embedding Dimension in Low-rank Network Models". Model: A = P + E with P = rho * X X^T, X in R^{n x r}. ASE: Xhat_{1:d} = Uhat_{1:d} |Shat|^{1/2}_{1:d}, eigenpairs sorted by |eigenvalue| desc. Backend: torch CUDA eigh when available (float64), else numpy. """ import csv import json import math import os import time import zlib import numpy as np try: import torch HAS_TORCH = True HAS_CUDA = torch.cuda.is_available() except Exception: HAS_TORCH = False HAS_CUDA = False R_TRUE = 5 # true latent dimension used throughout the paper's experiments def seed_for(*parts): """Stable 32-bit seed from string parts.""" return zlib.crc32("|".join(str(p) for p in parts).encode()) & 0xFFFFFFFF def rng_for(*parts): return np.random.default_rng(seed_for(*parts)) # ---------------------------------------------------------------- sampling def dirichlet_latent(n, r, rng): return rng.dirichlet(np.ones(r), size=n) # rows on the simplex def sym_noise(n, dist, rng, sigma=1.0): """Symmetric mean-zero noise matrix. dist in {normal, laplace, exp, poisson, t2.5}. sigma scales the base distribution (base variances: normal 1, laplace 2, exp 1, poisson 1, t2.5 = 5).""" if dist == "normal": M = rng.standard_normal((n, n)) elif dist == "laplace": # Paper item (b) says "E_ij + 1 ~ Laplace(0,1)", but Laplace(0,1) is already # mean-zero, so the +1 shift would violate the paper's own mean-zero # requirement; we read it as E_ij ~ Laplace(0,1) (variance 2). M = rng.laplace(0.0, 1.0, size=(n, n)) elif dist == "exp": M = rng.exponential(1.0, size=(n, n)) - 1.0 elif dist == "poisson": M = rng.poisson(1.0, size=(n, n)).astype(np.float64) - 1.0 elif dist == "t2.5": M = rng.standard_t(2.5, size=(n, n)) # infinite 4th moment: violates A7 else: raise ValueError(dist) if sigma != 1.0: M *= sigma U = np.triu(M, 1) return U + U.T + np.diag(np.diag(M)) def weighted_rdpg(n, r, dist, rng, rho=1.0, sigma=1.0): """Returns (A, Xs, lam_pop) with Xs = sqrt(rho)*X the estimand and lam_pop the non-zero eigenvalues of P (descending), computed exactly via the r x r Gram trick.""" X = dirichlet_latent(n, r, rng) Xs = math.sqrt(rho) * X P = Xs @ Xs.T A = P + sym_noise(n, dist, rng, sigma=sigma) lam_pop = np.linalg.eigvalsh(Xs.T @ Xs)[::-1].copy() # eigs of P via Gram return A, Xs, lam_pop def binary_dirichlet_rdpg(n, r, rng, rho=1.0): """Sparse binary RDPG with Dirichlet latents. A_ij ~ Bern(rho x_i^T x_j), diag 0.""" X = dirichlet_latent(n, r, rng) Xs = math.sqrt(rho) * X P = Xs @ Xs.T U = rng.random((n, n)) A = (np.triu(U, 1) < np.triu(P, 1)).astype(np.float64) A = A + A.T lam_pop = np.linalg.eigvalsh(Xs.T @ Xs)[::-1].copy() return A, Xs, lam_pop def sbm_binary(n, r, rng, p_in=0.9, p_out=0.1): """SBM per paper Section 4.2: pi ~ Dir(1_r), z ~ Cat(pi), B = 0.1 + 0.8 I. Latent truth X = U_{1:r} S^{1/2}_{1:r} from P = Z B Z^T (exact via r x r trick).""" B = np.full((r, r), p_out) + (p_in - p_out) * np.eye(r) while True: pi = rng.dirichlet(np.ones(r)) z = rng.choice(r, size=n, p=pi) counts = np.bincount(z, minlength=r) if counts.min() >= 1: break C = np.diag(np.sqrt(counts.astype(np.float64))) K = C @ B @ C # r x r, same non-zero spectrum as P lam, Q = np.linalg.eigh(K) lam = lam[::-1].copy() Q = Q[:, ::-1].copy() Z = np.zeros((n, r)) Z[np.arange(n), z] = 1.0 U = Z @ np.diag(1.0 / np.sqrt(counts)) @ Q # orthonormal columns X = U @ np.diag(np.sqrt(np.maximum(lam, 0.0))) P = X @ X.T Urand = rng.random((n, n)) A = (np.triu(Urand, 1) < np.triu(P, 1)).astype(np.float64) A = A + A.T return A, X, lam # ---------------------------------------------------------------- spectral def full_eigh(A): """Full symmetric eigendecomposition, float64. Returns (w, V) ascending, numpy.""" t0 = time.time() if HAS_CUDA: T = torch.from_numpy(np.ascontiguousarray(A)).cuda() w, V = torch.linalg.eigh(T) w = w.cpu().numpy() V = V.cpu().numpy() del T torch.cuda.empty_cache() else: w, V = np.linalg.eigh(A) return w, V, time.time() - t0 def spectral_norm_sym(E): """||E|| for symmetric E (largest |eigenvalue|).""" if HAS_CUDA: T = torch.from_numpy(np.ascontiguousarray(E)).cuda() w = torch.linalg.eigvalsh(T) out = float(torch.max(torch.abs(w)).cpu()) del T torch.cuda.empty_cache() return out w = np.linalg.eigvalsh(E) return float(np.max(np.abs(w))) def ase_decompose(A, r=R_TRUE, max_dim=45): """One eigh, reused across embedding dimensions. Returns dict with: order : indices of eigenpairs sorted by |eigenvalue| descending w : all eigenvalues (ascending, as returned by eigh) V : all eigenvectors abs_w_desc : |eigenvalues| descending max_abs_trail_full : max_{alpha>r} max_j |u_hat_{j,alpha}| (ALL trailing pairs) max_abs_trail_win : same but only over trailing pairs r+1..max_dim (used in ASE) eigh_s : eigh wall seconds """ w, V, eigh_s = full_eigh(A) order = np.argsort(-np.abs(w), kind="stable") abs_w_desc = np.abs(w)[order] trail = order[r:] max_abs_trail_full = float(np.max(np.abs(V[:, trail]))) if trail.size else float("nan") win = order[r:max_dim] max_abs_trail_win = float(np.max(np.abs(V[:, win]))) if win.size else float("nan") return dict(order=order, w=w, V=V, abs_w_desc=abs_w_desc, max_abs_trail_full=max_abs_trail_full, max_abs_trail_win=max_abs_trail_win, eigh_s=eigh_s) def ase_embed(dec, d): """d-dimensional ASE from a decomposition.""" idx = dec["order"][:d] return dec["V"][:, idx] * np.sqrt(np.abs(dec["w"][idx]))[None, :] def trailing_block_2inf(dec, r, d): """||Xhat_{r+1:d}||_{2,inf}: max row norm of the extra-dimension block (d>r).""" if d <= r: return 0.0 idx = dec["order"][r:d] blk = dec["V"][:, idx] * np.sqrt(np.abs(dec["w"][idx]))[None, :] return float(np.max(np.linalg.norm(blk, axis=1))) # ---------------------------------------------------------------- alignment def pad_cols(M, d): n, c = M.shape if c >= d: return M[:, :d] return np.hstack([M, np.zeros((n, d - c))]) def procrustes(Xhat, Xtrue): """W = argmin_W ||Xhat W - Xtrue||_F over O_d (Eq. 18 in the paper).""" M = Xhat.T @ Xtrue U, s, Vt = np.linalg.svd(M) W = U @ Vt return W, s def errors_at_dim(dec, Xs, d, r=R_TRUE): """Paper's evaluation: pad, Frobenius-Procrustes align, report norms. Returns (err2inf, errF, trail2inf, min_frob_sq) where min_frob_sq is the exact closed-form min over W of ||Xhat W - Xtrue||_F^2 (from the Procrustes SVD).""" Xhat = ase_embed(dec, d) if d >= r: Xt = pad_cols(Xs, d) Xh = Xhat else: Xh = pad_cols(Xhat, r) # Xhat^circ per Eq. (def:Xcirc) Xt = Xs W, s = procrustes(Xh, Xt) D = Xh @ W - Xt err2inf = float(np.max(np.linalg.norm(D, axis=1))) errF = float(np.linalg.norm(D)) min_frob_sq = float((Xh * Xh).sum() + (Xt * Xt).sum() - 2.0 * s.sum()) return err2inf, errF, trailing_block_2inf(dec, r, d), min_frob_sq def min_2inf_over_W(Xh, Xt, iters=300, seed=0): """Approximately minimize ||Xh W - Xt||_{2,inf} over orthogonal W (subgradient descent + polar retraction, multi-start). Returns achieved value (upper bound on the true min).""" rng = np.random.default_rng(seed) d = Xh.shape[1] W0, _ = procrustes(Xh, Xt) best = np.inf for start in range(3): W = W0.copy() if start > 0: Q, _ = np.linalg.qr(W0 + 0.05 * rng.standard_normal((d, d))) W = Q step = 0.1 for it in range(iters): D = Xh @ W - Xt rown = np.linalg.norm(D, axis=1) i = int(np.argmax(rown)) best = min(best, float(rown[i])) if rown[i] < 1e-15: break g = np.outer(Xh[i], D[i] / rown[i]) # d x d subgradient wrt W W = W - step * g U, _, Vt = np.linalg.svd(W) # polar retraction to O_d W = U @ Vt step *= 0.985 return best # ---------------------------------------------------------------- output class ResultSink: """Appends rows to a local CSV and periodically pushes it to a HF dataset repo.""" def __init__(self, fname, fieldnames, repo_id="visv-Bro/rdpg-misspec-results"): self.fname = fname self.fieldnames = fieldnames self.repo_id = repo_id self.rows_since_push = 0 new = not os.path.exists(fname) self.fh = open(fname, "a", newline="") self.writer = csv.DictWriter(self.fh, fieldnames=fieldnames) if new: self.writer.writeheader() self.fh.flush() def add(self, **row): self.writer.writerow(row) self.fh.flush() self.rows_since_push += 1 def push(self, force=False): if os.environ.get("NO_PUSH", "0") == "1": return if self.rows_since_push == 0 and not force: return try: from huggingface_hub import HfApi HfApi().upload_file( path_or_fileobj=self.fname, path_in_repo=os.path.basename(self.fname), repo_id=self.repo_id, repo_type="dataset", ) print(f"[push] {self.fname} -> {self.repo_id} ok", flush=True) self.rows_since_push = 0 except Exception as e: # keep computing even if a push fails print(f"[push] FAILED ({e}); will retry later", flush=True) def log(msg): print(f"[{time.strftime('%H:%M:%S')}] {msg}", flush=True)