*.7z filter=lfs diff=lfs merge=lfs -text *.arrow filter=lfs diff=lfs merge=lfs -text *.avro filter=lfs diff=lfs merge=lfs -text *.bin filter=lfs diff=lfs merge=lfs -text *.bz2 filter=lfs diff=lfs merge=lfs -text *.ckpt filter=lfs diff=lfs merge=lfs -text *.ftz filter=lfs diff=lfs merge=lfs -text *.gz filter=lfs diff=lfs merge=lfs -text *.h5 filter=lfs diff=lfs merge=lfs -text *.joblib filter=lfs diff=lfs merge=lfs -text *.lfs.* filter=lfs diff=lfs merge=lfs -text *.lz4 filter=lfs diff=lfs merge=lfs -text *.mds filter=lfs diff=lfs merge=lfs -text *.mlmodel filter=lfs diff=lfs merge=lfs -text *.model filter=lfs diff=lfs merge=lfs -text *.msgpack filter=lfs diff=lfs merge=lfs -text *.npy filter=lfs diff=lfs merge=lfs -text *.npz filter=lfs diff=lfs merge=lfs -text *.onnx filter=lfs diff=lfs merge=lfs -text *.ot filter=lfs diff=lfs merge=lfs -text *.parquet filter=lfs diff=lfs merge=lfs -text *.pb filter=lfs diff=lfs merge=lfs -text *.pickle filter=lfs diff=lfs merge=lfs -text *.pkl filter=lfs diff=lfs merge=lfs -text *.pt filter=lfs diff=lfs merge=lfs -text *.pth filter=lfs diff=lfs merge=lfs -text *.rar filter=lfs diff=lfs merge=lfs -text *.safetensors filter=lfs diff=lfs merge=lfs -text saved_model/**/* filter=lfs diff=lfs merge=lfs -text *.tar.* filter=lfs diff=lfs merge=lfs -text *.tar filter=lfs diff=lfs merge=lfs -text *.tflite filter=lfs diff=lfs merge=lfs -text *.tgz filter=lfs diff=lfs merge=lfs -text *.wasm filter=lfs diff=lfs merge=lfs -text *.xz filter=lfs diff=lfs merge=lfs -text *.zip filter=lfs diff=lfs merge=lfs -text *.zst filter=lfs diff=lfs merge=lfs -text *tfevents* filter=lfs diff=lfs merge=lfs -text # Audio files - uncompressed *.pcm filter=lfs diff=lfs merge=lfs -text *.sam filter=lfs diff=lfs merge=lfs -text *.raw filter=lfs diff=lfs merge=lfs -text # Audio files - compressed *.aac filter=lfs diff=lfs merge=lfs -text *.flac filter=lfs diff=lfs merge=lfs -text *.mp3 filter=lfs diff=lfs merge=lfs -text *.ogg filter=lfs diff=lfs merge=lfs -text *.wav filter=lfs diff=lfs merge=lfs -text # Image files - uncompressed *.bmp filter=lfs diff=lfs merge=lfs -text *.gif filter=lfs diff=lfs merge=lfs -text *.png filter=lfs diff=lfs merge=lfs -text *.tiff filter=lfs diff=lfs merge=lfs -text # Image files - compressed *.jpg filter=lfs diff=lfs merge=lfs -text *.jpeg filter=lfs diff=lfs merge=lfs -text *.webp filter=lfs diff=lfs merge=lfs -text # Video files - compressed *.mp4 filter=lfs diff=lfs merge=lfs -text *.webm filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/All_Solutions/SBS1697_14_Signatures/Activities/SBS1697_S14_NMF_Activity_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/All_Solutions/SBS1697_14_Signatures/Signatures/Custom_Signature_Plots.pdf filter=lfs diff=lfs merge=lfs -text 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filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/All_Solutions/SBS1697_29_Signatures/Activities/SBS1697_S29_NMF_Activity_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/All_Solutions/SBS1697_30_Signatures/Activities/SBS1697_S30_TMB_NMF_plot.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/All_Solutions/SBS1697_30_Signatures/Activities/SBS1697_S30_NMF_Activity_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/All_Solutions/SBS1697_30_Signatures/Signatures/Custom_Signature_Plots.pdf filter=lfs diff=lfs merge=lfs -text 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filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/All_Solutions/SBS1697_34_Signatures/Activities/SBS1697_S34_TMB_NMF_plot.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/All_Solutions/SBS1697_34_Signatures/Activities/SBS1697_S34_NMF_Activity_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/All_Solutions/SBS1697_35_Signatures/Activities/SBS1697_S35_TMB_NMF_plot.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/All_Solutions/SBS1697_35_Signatures/Activities/SBS1697_S35_NMF_Activity_Plots.pdf filter=lfs diff=lfs merge=lfs -text 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filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/All_Solutions/SBS1697_4_Signatures/Signatures/Custom_Signature_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/All_Solutions/SBS1697_5_Signatures/Activities/SBS1697_S5_NMF_Activity_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/All_Solutions/SBS1697_5_Signatures/Signatures/Custom_Signature_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/All_Solutions/SBS1697_6_Signatures/Activities/SBS1697_S6_NMF_Activity_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/All_Solutions/SBS1697_6_Signatures/Signatures/Custom_Signature_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/All_Solutions/SBS1697_7_Signatures/Signatures/Custom_Signature_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/All_Solutions/SBS1697_7_Signatures/Activities/SBS1697_S7_NMF_Activity_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/All_Solutions/SBS1697_8_Signatures/Activities/SBS1697_S8_NMF_Activity_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/All_Solutions/SBS1697_8_Signatures/Signatures/Custom_Signature_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/All_Solutions/SBS1697_9_Signatures/Activities/SBS1697_S9_NMF_Activity_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/All_Solutions/SBS1697_9_Signatures/Signatures/Custom_Signature_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/Suggested_Solution/COSMIC_SBS1697_Decomposed_Solution/Activities/COSMIC_SBS1697_Activity_Plots_refit.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/Suggested_Solution/COSMIC_SBS1697_Decomposed_Solution/Signatures/Custom_Signature_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/Suggested_Solution/SBS1697_De-Novo_Solution/Activities/SBS1697_De-Novo_Activity_Plots_refit.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/Suggested_Solution/SBS1697_De-Novo_Solution/Signatures/Custom_Signature_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_12/Output/SBS1697/All_Solutions/SBS1697_10_Signatures/Activities/SBS1697_S10_NMF_Activity_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_12/Output/SBS1697/All_Solutions/SBS1697_10_Signatures/Signatures/Custom_Signature_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_12/Output/SBS1697/All_Solutions/SBS1697_11_Signatures/Activities/SBS1697_S11_NMF_Activity_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_12/Output/SBS1697/All_Solutions/SBS1697_11_Signatures/Signatures/Custom_Signature_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_12/Output/SBS1697/All_Solutions/SBS1697_12_Signatures/Activities/SBS1697_S12_NMF_Activity_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_12/Output/SBS1697/All_Solutions/SBS1697_12_Signatures/Signatures/Custom_Signature_Plots.pdf filter=lfs diff=lfs merge=lfs -text 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Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_12/Output/SBS1697/All_Solutions/SBS1697_14_Signatures/Signatures/Custom_Signature_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_12/Output/SBS1697/All_Solutions/SBS1697_15_Signatures/Activities/SBS1697_S15_NMF_Activity_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_12/Output/SBS1697/All_Solutions/SBS1697_15_Signatures/Activities/SBS1697_S15_TMB_NMF_plot.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_12/Output/SBS1697/All_Solutions/SBS1697_15_Signatures/Signatures/Custom_Signature_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/Suggested_Solution/COSMIC_SBS1697_Decomposed_Solution/Activities/Decomposed_Mutation_Probabilities.txt filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_12/Output/SBS1697/All_Solutions/SBS1697_16_Signatures/Activities/SBS1697_S16_TMB_NMF_plot.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_12/Output/SBS1697/All_Solutions/SBS1697_16_Signatures/Activities/SBS1697_S16_NMF_Activity_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_12/Output/SBS1697/All_Solutions/SBS1697_16_Signatures/Signatures/Custom_Signature_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_12/Output/SBS1697/All_Solutions/SBS1697_17_Signatures/Activities/SBS1697_S17_NMF_Activity_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_12/Output/SBS1697/All_Solutions/SBS1697_17_Signatures/Activities/SBS1697_S17_TMB_NMF_plot.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_12/Output/SBS1697/All_Solutions/SBS1697_17_Signatures/Signatures/Custom_Signature_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/Suggested_Solution/SBS1697_De-Novo_Solution/Activities/Decomposed_Mutation_Probabilities.txt filter=lfs diff=lfs merge=lfs -text 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filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_2/Output/SBS1697/All_Solutions/SBS1697_5_Signatures/Signatures/Custom_Signature_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_2/Output/SBS1697/All_Solutions/SBS1697_6_Signatures/Activities/SBS1697_S6_NMF_Activity_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_2/Output/SBS1697/All_Solutions/SBS1697_6_Signatures/Signatures/Custom_Signature_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_2/Output/SBS1697/All_Solutions/SBS1697_7_Signatures/Activities/SBS1697_S7_NMF_Activity_Plots.pdf filter=lfs diff=lfs merge=lfs -text 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filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_2/Output/SBS1697/Suggested_Solution/COSMIC_SBS1697_Decomposed_Solution/Activities/COSMIC_SBS1697_Activity_Plots_refit.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_2/Output/SBS1697/Suggested_Solution/COSMIC_SBS1697_Decomposed_Solution/Signatures/Custom_Signature_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_2/Output/SBS1697/Suggested_Solution/SBS1697_De-Novo_Solution/Activities/SBS1697_De-Novo_Activity_Plots_refit.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_2/Output/SBS1697/Suggested_Solution/SBS1697_De-Novo_Solution/Signatures/Custom_Signature_Plots.pdf filter=lfs diff=lfs merge=lfs -text 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filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/All_Solutions/SBS1697_25_Signatures/Activities/SBS1697_S25_TMB_NMF_plot.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/All_Solutions/SBS1697_25_Signatures/Activities/SBS1697_S25_NMF_Activity_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/All_Solutions/SBS1697_25_Signatures/Signatures/Custom_Signature_Plots.pdf filter=lfs diff=lfs merge=lfs -text Benchmark/Extended_Scenarios_withOUT_Noise/SigProfilerExtractor/Scenario_ext_11/Output/SBS1697/All_Solutions/SBS1697_26_Signatures/Activities/SBS1697_S26_NMF_Activity_Plots.pdf filter=lfs diff=lfs merge=lfs -text 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