adibvafa commited on
Commit
5e33eb5
·
verified ·
1 Parent(s): 9eb331d

Add cells and proteins configs

Browse files
Files changed (3) hide show
  1. README.md +41 -0
  2. cells/cells.parquet +3 -0
  3. proteins/proteins.parquet +3 -0
README.md ADDED
@@ -0,0 +1,41 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ license: mit
3
+ configs:
4
+ - config_name: cells
5
+ data_files: cells/cells.parquet
6
+ - config_name: proteins
7
+ data_files: proteins/proteins.parquet
8
+ ---
9
+
10
+ # BioReason-Cell-Contextual-Data
11
+
12
+ Context tables for human cell lines and RNA-binding proteins.
13
+
14
+ ## `cells`
15
+
16
+ 14 human cell lines.
17
+
18
+ | column | description |
19
+ |---|---|
20
+ | `cell_type` | cell line name |
21
+ | `description` | origin, driver mutations, signaling state and post-transcriptional regulatory context of the cell line |
22
+
23
+ ## `proteins`
24
+
25
+ 101 RNA-binding proteins.
26
+
27
+ | column | description |
28
+ |---|---|
29
+ | `protein` | gene symbol |
30
+ | `protein_name` | UniProt protein name |
31
+ | `uniprot_id` | UniProt accession |
32
+ | `functional_roles` | mRNA stabilizer, mRNA destabilizer, splicing factor, localization factor, or uncharacterized |
33
+ | `protein_function` | function summary focused on mRNA regulation |
34
+ | `mirna_crosstalk_roles` | competitive protectors, cooperative enhancers, miRNA biogenesis, miRNA biogenesis inhibitors, ago associated |
35
+ | `domains` | protein domains |
36
+ | `subcellular_location` | subcellular locations |
37
+ | `interacting_proteins` | interacting proteins from this table |
38
+
39
+ ## License
40
+
41
+ MIT
cells/cells.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:93cb910c956d655ca04da058e9cdf82a6e0cb06323f4a9cfd9656c429604531c
3
+ size 17526
proteins/proteins.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:86433c5ec7b30655186a08f213159d79b5705ea331cf66eb4ebbf9fbe943eec7
3
+ size 46994