Add cells and proteins configs
Browse files- README.md +41 -0
- cells/cells.parquet +3 -0
- proteins/proteins.parquet +3 -0
README.md
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---
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license: mit
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configs:
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- config_name: cells
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data_files: cells/cells.parquet
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- config_name: proteins
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data_files: proteins/proteins.parquet
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---
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# BioReason-Cell-Contextual-Data
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Context tables for human cell lines and RNA-binding proteins.
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## `cells`
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14 human cell lines.
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| column | description |
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|---|---|
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| `cell_type` | cell line name |
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| `description` | origin, driver mutations, signaling state and post-transcriptional regulatory context of the cell line |
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## `proteins`
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101 RNA-binding proteins.
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| column | description |
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|---|---|
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| `protein` | gene symbol |
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| `protein_name` | UniProt protein name |
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| `uniprot_id` | UniProt accession |
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| `functional_roles` | mRNA stabilizer, mRNA destabilizer, splicing factor, localization factor, or uncharacterized |
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| `protein_function` | function summary focused on mRNA regulation |
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| `mirna_crosstalk_roles` | competitive protectors, cooperative enhancers, miRNA biogenesis, miRNA biogenesis inhibitors, ago associated |
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| `domains` | protein domains |
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| `subcellular_location` | subcellular locations |
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| `interacting_proteins` | interacting proteins from this table |
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## License
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MIT
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cells/cells.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:93cb910c956d655ca04da058e9cdf82a6e0cb06323f4a9cfd9656c429604531c
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size 17526
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proteins/proteins.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:86433c5ec7b30655186a08f213159d79b5705ea331cf66eb4ebbf9fbe943eec7
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size 46994
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