--- dataset_info: - config_name: cells features: - name: name dtype: string - name: tissue dtype: string - name: top_expressed_genes dtype: string - name: top_expressed_pathways dtype: string - name: genetic_dependencies dtype: string - name: description dtype: string splits: - name: cells num_bytes: 270879 num_examples: 109 download_size: 154674 dataset_size: 270879 - config_name: genes features: - name: gene dtype: string - name: uniprot_id dtype: string - name: protein_name dtype: string - name: protein_function dtype: string - name: protein_domains list: string - name: protein_interactions list: string - name: pathways list: string - name: go_mf list: string - name: go_bp list: string - name: go_cc list: string - name: subcellular_location dtype: string - name: is_essential dtype: bool - name: important_pathways list: string splits: - name: genes num_bytes: 1433892799 num_examples: 19590 download_size: 70111695 dataset_size: 1433892799 - config_name: pathways features: - name: pathway dtype: string - name: genes list: string - name: brief_description dtype: string splits: - name: pathways num_bytes: 303872877 num_examples: 14743 download_size: 60725490 dataset_size: 303872877 - config_name: reasoning_kaufman features: - name: gene_target dtype: large_string - name: protein_target dtype: large_string - name: cell_type dtype: large_string - name: tissue_type dtype: large_string - name: stimulation dtype: large_string - name: pathway_name dtype: large_string - name: pathway_change dtype: large_string - name: pathway_score dtype: float64 - name: experiment dtype: large_string - name: cell_file dtype: large_string splits: - name: train num_bytes: 3135446083 num_examples: 9134718 - name: validation num_bytes: 391481892 num_examples: 1140556 - name: test num_bytes: 391898272 num_examples: 1141698 download_size: 190255550 dataset_size: 3918826247 - config_name: reasoning_marson features: - name: gene_target dtype: large_string - name: protein_target dtype: large_string - name: cell_type dtype: large_string - name: tissue_type dtype: large_string - name: stimulation dtype: large_string - name: pathway_name dtype: large_string - name: pathway_change dtype: large_string - name: pathway_score dtype: float64 - name: experiment dtype: large_string - name: cell_file dtype: large_string - name: donor_id dtype: large_string splits: - name: train num_bytes: 10929550019 num_examples: 29878544 - name: validation num_bytes: 1364643641 num_examples: 3730619 - name: test num_bytes: 1365982302 num_examples: 3734354 download_size: 658993353 dataset_size: 13660175962 - config_name: reasoning_nadig_replogle_new features: - name: gene_target dtype: string - name: protein_target dtype: string - name: cell_type dtype: string - name: tissue_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: pathway_score dtype: float64 - name: experiment dtype: string - name: cell_file dtype: string - name: is_essential dtype: bool - name: is_offtarget dtype: bool splits: - name: train num_bytes: 481106369 num_examples: 1902445 - name: test num_bytes: 173949262 num_examples: 696756 download_size: 28379155 dataset_size: 655055631 - config_name: reasoning_norman features: - name: gene_target list: string - name: protein_target list: string - name: cell_type dtype: string - name: tissue_type dtype: string - name: stimulation dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: pathway_score dtype: float64 - name: experiment dtype: string - name: cell_file dtype: string splits: - name: train num_bytes: 395155815 num_examples: 1326862 - name: validation num_bytes: 49342701 num_examples: 165672 - name: test num_bytes: 49397269 num_examples: 165838 download_size: 25791989 dataset_size: 493895785 - config_name: reasoning_papalexi2021 features: - name: gene_target dtype: string - name: protein_target dtype: string - name: cell_type dtype: string - name: tissue_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: pathway_score dtype: float64 - name: experiment dtype: string - name: cell_file dtype: string splits: - name: train num_bytes: 35086161 num_examples: 132716 - name: validation num_bytes: 4383551 num_examples: 16571 - name: test num_bytes: 4388271 num_examples: 16588 download_size: 2657990 dataset_size: 43857983 configs: - config_name: cells data_files: - split: cells path: cells/cells-* - config_name: genes data_files: - split: genes path: genes/genes-* - config_name: pathways data_files: - split: pathways path: pathways/pathways-* - config_name: reasoning_kaufman data_files: - split: train path: reasoning_kaufman/train-* - split: validation path: reasoning_kaufman/validation-* - split: test path: reasoning_kaufman/test-* - config_name: reasoning_marson data_files: - split: train path: reasoning_marson/train-* - split: validation path: reasoning_marson/validation-* - split: test path: reasoning_marson/test-* - config_name: reasoning_nadig_replogle_new data_files: - split: train path: reasoning_nadig_replogle_new/train-* - split: test path: reasoning_nadig_replogle_new/test-* - config_name: reasoning_nadig_replogle_new_offtarget_filtered data_files: - split: train path: reasoning_nadig_replogle_new_offtarget_filtered/train-* - split: test path: reasoning_nadig_replogle_new_offtarget_filtered/test-* - config_name: reasoning_norman data_files: - split: train path: reasoning_norman/train-* - split: validation path: reasoning_norman/validation-* - split: test path: reasoning_norman/test-* - config_name: reasoning_papalexi2021 data_files: - split: train path: reasoning_papalexi2021/train-* - split: validation path: reasoning_papalexi2021/validation-* - split: test path: reasoning_papalexi2021/test-* ---