| seed: 42 | |
| hf_dataset_name: /home/guloglut/scratch/cafa5_cafa6_data/combined_propagated_deduped | |
| hf_dataset_config: experiment_data_reasoning | |
| embed_model_path: facebook/esm2_t33_650M_UR50D | |
| embed_model_type: esm2 | |
| vocab_limits: | |
| mf: | |
| method: min_freq | |
| value: 20 | |
| bp: | |
| method: min_freq | |
| value: 20 | |
| cc: | |
| method: min_freq | |
| value: 20 | |
| top_n_organisms: 200 | |
| max_go_terms: 500 | |
| num_proc: 32 | |
| output_dir: artifacts/preprocessed | |
| dataset_name: cafa5_cafa6_processed | |