Datasets:
williamgilpin
/
grn

Dataset card Data Studio Files
xet
Community
The full dataset viewer is not available (click to read why). Only showing a preview of the rows.
The dataset generation failed because of a cast error
Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 2 new columns ({'Gene2', 'Gene1'}) and 759 missing columns ({'H9_24h_055', 'H9_72h_042', 'H9_72h_082', 'H9_12h_052', 'H9_96h_006', 'H9_36h_089', 'H9_96h_115', 'H9_00hb4s_086', 'H9_72h_038', 'H9_12h_023', 'H9_96h_103', 'H9_72h_083', 'H9_72h_047', 'H9_00hb4s_084', 'H9_72h_053', 'H9_36h_120', 'H9_72h_033', 'H9_72h_016', 'H9_24h_065', 'H9_12h_067', 'H9_00hb4s_015', 'H9_96h_079', 'H9_96h_095', 'H9_96h_156', 'H9_00hb4s_074', 'H9_96h_093', 'H9_72h_078', 'H9_72h_112', 'H9_36h_078', 'H9_96h_114', 'H9_12h_039', 'H9_72h_098', 'H9_72h_005', 'H9_36h_141', 'H9_72h_122', 'H9_72h_021', 'H9_36h_024', 'H9_36h_118', 'H9_00hb4s_024', 'H9_36h_016', 'H9_36h_034', 'H9_24h_069', 'H9_36h_111', 'H9_00hb4s_078', 'H9_12h_077', 'H9_24h_029', 'H9_36h_098', 'H9_12h_009', 'H9_72h_050', 'H9_00hb4s_010', 'H9_12h_062', 'H9_00hb4s_009', 'H9_12h_004', 'H9_96h_152', 'H9_96h_150', 'H9_00hb4s_065', 'H9_72h_109', 'H9_96h_083', 'H9_72h_060', 'H9_72h_102', 'H9_96h_067', 'H9_96h_098', 'H9_72h_137', 'H9_96h_166', 'H9_36h_071', 'H9_96h_116', 'H9_24h_053', 'H9_24h_037', 'H9_00hb4s_055', 'H9_72h_069', 'H9_24h_017', 'H9_72h_090', 'H9_72h_111', 'H9_96h_134', 'H9_72h_139', 'H9_72h_014', 'H9_36h_128', 'H9_96h_020', 'H9_24h_024', 'H9_96h_080', 'H9_36h_097', 'H9_36h_179', 'H9_96h_054', 'H9_00hb4s_032', 'H9_36h_003', 'H9_96h_127', 'H9_36h_019', 'H9_24h_018', 'H9_96h_009', 'H9_96h_129', 'H9_24h_038', 'H9_36h_093', 'H9_00hb4s_072', 'H9_72h_126', 'H9_12h_084', 'H9_00hb4s_066', 'H9_36h_136', 'H9_12h_013', 'H9_36h_135', 'H9_96h_111', 'H9_12h_108', 'H9_12h_055', 'H9_96h_005', 'H9_36h_123', 'H9_
...
_36h_173', 'H9_24h_063', 'H9_12h_016', 'H9_96h_122', 'H9_12h_109', 'H9_12h_098', 'H9_36h_012', 'H9_72h_065', 'H9_96h_028', 'H9_24h_042', 'H9_24h_035', 'H9_96h_161', 'H9_00hb4s_018', 'H9_24h_039', 'H9_12h_101', 'H9_36h_132', 'H9_72h_054', 'H9_96h_106', 'H9_96h_107', 'H9_96h_171', 'H9_00hb4s_059', 'H9_72h_049', 'H9_00hb4s_026', 'H9_72h_120', 'H9_00hb4s_058', 'H9_36h_177', 'H9_72h_085', 'H9_00hb4s_043', 'H9_72h_013', 'H9_72h_015', 'H9_12h_030', 'H9_36h_011', 'H9_72h_118', 'H9_00hb4s_089', 'H9_24h_032', 'H9_96h_047', 'H9_12h_057', 'H9_00hb4s_088', 'H9_72h_081', 'H9_12h_085', 'H9_12h_025', 'H9_12h_104', 'H9_36h_055', 'H9_24h_078', 'H9_00hb4s_016', 'H9_12h_105', 'H9_96h_109', 'H9_00hb4s_045', 'H9_96h_185', 'H9_12h_066', 'H9_36h_007', 'H9_72h_011', 'H9_36h_006', 'H9_72h_105', 'H9_36h_004', 'H9_72h_003', 'H9_36h_148', 'H9_72h_020', 'H9_12h_001', 'H9_00hb4s_087', 'H9_12h_015', 'H9_36h_146', 'H9_72h_057', 'H9_96h_010', 'H9_96h_029', 'H9_36h_106', 'H9_72h_070', 'H9_00hb4s_095', 'H9_36h_059', 'H9_24h_044', 'H9_72h_080', 'H9_72h_104', 'H9_36h_054', 'H9_96h_142', 'H9_72h_019', 'H9_96h_110', 'H9_96h_126', 'H9_24h_023', 'H9_96h_108', 'H9_72h_096', 'H9_72h_002', 'H9_96h_090', 'H9_72h_138', 'H9_72h_027', 'H9_24h_041', 'H9_00hb4s_040', 'H9_36h_100', 'H9_96h_062', 'H9_72h_127', 'H9_96h_180', 'H9_36h_022', 'H9_96h_086', 'H9_36h_112', 'H9_96h_130', 'H9_00hb4s_031', 'H9_96h_064', 'H9_96h_154', 'H9_12h_073', 'H9_00hb4s_061', 'H9_36h_127', 'H9_00hb4s_029', 'H9_12h_018', 'H9_12h_021', 'H9_00hb4s_035'}).

This happened while the csv dataset builder was generating data using

hf://datasets/williamgilpin/grn/BEELINE/1000_ChIP-seq_hESC/label.csv (at revision 3cab27dace2c8b35932844e2b103f008f7fc4051)

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1871, in _prepare_split_single
                  writer.write_table(table)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 643, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2293, in table_cast
                  return cast_table_to_schema(table, schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2241, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              Gene1: string
              Gene2: string
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 482
              to
              {'Unnamed: 0': Value(dtype='string', id=None), 'H9_00hb4s_001': Value(dtype='float64', id=None), 'H9_00hb4s_002': Value(dtype='float64', id=None), 'H9_00hb4s_003': Value(dtype='float64', id=None), 'H9_00hb4s_004': Value(dtype='float64', id=None), 'H9_00hb4s_005': Value(dtype='float64', id=None), 'H9_00hb4s_006': Value(dtype='float64', id=None), 'H9_00hb4s_007': Value(dtype='float64', id=None), 'H9_00hb4s_008': Value(dtype='float64', id=None), 'H9_00hb4s_009': Value(dtype='float64', id=None), 'H9_00hb4s_010': Value(dtype='float64', id=None), 'H9_00hb4s_011': Value(dtype='float64', id=None), 'H9_00hb4s_012': Value(dtype='float64', id=None), 'H9_00hb4s_013': Value(dtype='float64', id=None), 'H9_00hb4s_015': Value(dtype='float64', id=None), 'H9_00hb4s_016': Value(dtype='float64', id=None), 'H9_00hb4s_017': Value(dtype='float64', id=None), 'H9_00hb4s_018': Value(dtype='float64', id=None), 'H9_00hb4s_019': Value(dtype='float64', id=None), 'H9_00hb4s_020': Value(dtype='float64', id=None), 'H9_00hb4s_021': Value(dtype='float64', id=None), 'H9_00hb4s_022': Value(dtype='float64', id=None), 'H9_00hb4s_023': Value(dtype='float64', id=None), 'H9_00hb4s_024': Value(dtype='float64', id=None), 'H9_00hb4s_025': Value(dtype='float64', id=None), 'H9_00hb4s_026': Value(dtype='float64', id=None), 'H9_00hb4s_027': Value(dtype='float64', id=None), 'H9_00hb4s_028': Value(dtype='float64', id=None), 'H9_00hb4s_029': Value(dtype='float64', id=None), 'H9_00hb4s_030': Value(dtype='float64', id=None), 'H9
              ...
              _96h_158': Value(dtype='float64', id=None), 'H9_96h_159': Value(dtype='float64', id=None), 'H9_96h_160': Value(dtype='float64', id=None), 'H9_96h_161': Value(dtype='float64', id=None), 'H9_96h_162': Value(dtype='float64', id=None), 'H9_96h_163': Value(dtype='float64', id=None), 'H9_96h_164': Value(dtype='float64', id=None), 'H9_96h_165': Value(dtype='float64', id=None), 'H9_96h_166': Value(dtype='float64', id=None), 'H9_96h_167': Value(dtype='float64', id=None), 'H9_96h_168': Value(dtype='float64', id=None), 'H9_96h_169': Value(dtype='float64', id=None), 'H9_96h_170': Value(dtype='float64', id=None), 'H9_96h_171': Value(dtype='float64', id=None), 'H9_96h_173': Value(dtype='float64', id=None), 'H9_96h_174': Value(dtype='float64', id=None), 'H9_96h_175': Value(dtype='float64', id=None), 'H9_96h_176': Value(dtype='float64', id=None), 'H9_96h_177': Value(dtype='float64', id=None), 'H9_96h_178': Value(dtype='float64', id=None), 'H9_96h_179': Value(dtype='float64', id=None), 'H9_96h_180': Value(dtype='float64', id=None), 'H9_96h_182': Value(dtype='float64', id=None), 'H9_96h_183': Value(dtype='float64', id=None), 'H9_96h_184': Value(dtype='float64', id=None), 'H9_96h_185': Value(dtype='float64', id=None), 'H9_96h_186': Value(dtype='float64', id=None), 'H9_96h_187': Value(dtype='float64', id=None), 'H9_96h_188': Value(dtype='float64', id=None), 'H9_96h_189': Value(dtype='float64', id=None), 'H9_96h_190': Value(dtype='float64', id=None), 'H9_96h_192': Value(dtype='float64', id=None)}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1436, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1053, in convert_to_parquet
                  builder.download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 925, in download_and_prepare
                  self._download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1001, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1742, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1873, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 2 new columns ({'Gene2', 'Gene1'}) and 759 missing columns ({'H9_24h_055', 'H9_72h_042', 'H9_72h_082', 'H9_12h_052', 'H9_96h_006', 'H9_36h_089', 'H9_96h_115', 'H9_00hb4s_086', 'H9_72h_038', 'H9_12h_023', 'H9_96h_103', 'H9_72h_083', 'H9_72h_047', 'H9_00hb4s_084', 'H9_72h_053', 'H9_36h_120', 'H9_72h_033', 'H9_72h_016', 'H9_24h_065', 'H9_12h_067', 'H9_00hb4s_015', 'H9_96h_079', 'H9_96h_095', 'H9_96h_156', 'H9_00hb4s_074', 'H9_96h_093', 'H9_72h_078', 'H9_72h_112', 'H9_36h_078', 'H9_96h_114', 'H9_12h_039', 'H9_72h_098', 'H9_72h_005', 'H9_36h_141', 'H9_72h_122', 'H9_72h_021', 'H9_36h_024', 'H9_36h_118', 'H9_00hb4s_024', 'H9_36h_016', 'H9_36h_034', 'H9_24h_069', 'H9_36h_111', 'H9_00hb4s_078', 'H9_12h_077', 'H9_24h_029', 'H9_36h_098', 'H9_12h_009', 'H9_72h_050', 'H9_00hb4s_010', 'H9_12h_062', 'H9_00hb4s_009', 'H9_12h_004', 'H9_96h_152', 'H9_96h_150', 'H9_00hb4s_065', 'H9_72h_109', 'H9_96h_083', 'H9_72h_060', 'H9_72h_102', 'H9_96h_067', 'H9_96h_098', 'H9_72h_137', 'H9_96h_166', 'H9_36h_071', 'H9_96h_116', 'H9_24h_053', 'H9_24h_037', 'H9_00hb4s_055', 'H9_72h_069', 'H9_24h_017', 'H9_72h_090', 'H9_72h_111', 'H9_96h_134', 'H9_72h_139', 'H9_72h_014', 'H9_36h_128', 'H9_96h_020', 'H9_24h_024', 'H9_96h_080', 'H9_36h_097', 'H9_36h_179', 'H9_96h_054', 'H9_00hb4s_032', 'H9_36h_003', 'H9_96h_127', 'H9_36h_019', 'H9_24h_018', 'H9_96h_009', 'H9_96h_129', 'H9_24h_038', 'H9_36h_093', 'H9_00hb4s_072', 'H9_72h_126', 'H9_12h_084', 'H9_00hb4s_066', 'H9_36h_136', 'H9_12h_013', 'H9_36h_135', 'H9_96h_111', 'H9_12h_108', 'H9_12h_055', 'H9_96h_005', 'H9_36h_123', 'H9_
              ...
              _36h_173', 'H9_24h_063', 'H9_12h_016', 'H9_96h_122', 'H9_12h_109', 'H9_12h_098', 'H9_36h_012', 'H9_72h_065', 'H9_96h_028', 'H9_24h_042', 'H9_24h_035', 'H9_96h_161', 'H9_00hb4s_018', 'H9_24h_039', 'H9_12h_101', 'H9_36h_132', 'H9_72h_054', 'H9_96h_106', 'H9_96h_107', 'H9_96h_171', 'H9_00hb4s_059', 'H9_72h_049', 'H9_00hb4s_026', 'H9_72h_120', 'H9_00hb4s_058', 'H9_36h_177', 'H9_72h_085', 'H9_00hb4s_043', 'H9_72h_013', 'H9_72h_015', 'H9_12h_030', 'H9_36h_011', 'H9_72h_118', 'H9_00hb4s_089', 'H9_24h_032', 'H9_96h_047', 'H9_12h_057', 'H9_00hb4s_088', 'H9_72h_081', 'H9_12h_085', 'H9_12h_025', 'H9_12h_104', 'H9_36h_055', 'H9_24h_078', 'H9_00hb4s_016', 'H9_12h_105', 'H9_96h_109', 'H9_00hb4s_045', 'H9_96h_185', 'H9_12h_066', 'H9_36h_007', 'H9_72h_011', 'H9_36h_006', 'H9_72h_105', 'H9_36h_004', 'H9_72h_003', 'H9_36h_148', 'H9_72h_020', 'H9_12h_001', 'H9_00hb4s_087', 'H9_12h_015', 'H9_36h_146', 'H9_72h_057', 'H9_96h_010', 'H9_96h_029', 'H9_36h_106', 'H9_72h_070', 'H9_00hb4s_095', 'H9_36h_059', 'H9_24h_044', 'H9_72h_080', 'H9_72h_104', 'H9_36h_054', 'H9_96h_142', 'H9_72h_019', 'H9_96h_110', 'H9_96h_126', 'H9_24h_023', 'H9_96h_108', 'H9_72h_096', 'H9_72h_002', 'H9_96h_090', 'H9_72h_138', 'H9_72h_027', 'H9_24h_041', 'H9_00hb4s_040', 'H9_36h_100', 'H9_96h_062', 'H9_72h_127', 'H9_96h_180', 'H9_36h_022', 'H9_96h_086', 'H9_36h_112', 'H9_96h_130', 'H9_00hb4s_031', 'H9_96h_064', 'H9_96h_154', 'H9_12h_073', 'H9_00hb4s_061', 'H9_36h_127', 'H9_00hb4s_029', 'H9_12h_018', 'H9_12h_021', 'H9_00hb4s_035'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/williamgilpin/grn/BEELINE/1000_ChIP-seq_hESC/label.csv (at revision 3cab27dace2c8b35932844e2b103f008f7fc4051)
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)

Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.

Unnamed: 0
string
H9_00hb4s_001
float64
H9_00hb4s_002
float64
H9_00hb4s_003
float64
H9_00hb4s_004
float64
H9_00hb4s_005
float64
H9_00hb4s_006
float64
H9_00hb4s_007
float64
H9_00hb4s_008
float64
H9_00hb4s_009
float64
H9_00hb4s_010
float64
H9_00hb4s_011
float64
H9_00hb4s_012
float64
H9_00hb4s_013
float64
H9_00hb4s_015
float64
H9_00hb4s_016
float64
H9_00hb4s_017
float64
H9_00hb4s_018
float64
H9_00hb4s_019
float64
H9_00hb4s_020
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H9_00hb4s_021
float64
H9_00hb4s_022
float64
H9_00hb4s_023
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H9_00hb4s_024
float64
H9_00hb4s_025
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H9_00hb4s_026
float64
H9_00hb4s_027
float64
H9_00hb4s_028
float64
H9_00hb4s_029
float64
H9_00hb4s_030
float64
H9_00hb4s_031
float64
H9_00hb4s_032
float64
H9_00hb4s_033
float64
H9_00hb4s_034
float64
H9_00hb4s_035
float64
H9_00hb4s_036
float64
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float64
H9_00hb4s_038
float64
H9_00hb4s_039
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H9_00hb4s_041
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H9_00hb4s_043
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H9_00hb4s_044
float64
H9_00hb4s_045
float64
H9_00hb4s_046
float64
H9_00hb4s_047
float64
H9_00hb4s_048
float64
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float64
H9_00hb4s_051
float64
H9_00hb4s_052
float64
H9_00hb4s_053
float64
H9_00hb4s_054
float64
H9_00hb4s_055
float64
H9_00hb4s_056
float64
H9_00hb4s_057
float64
H9_00hb4s_058
float64
H9_00hb4s_059
float64
H9_00hb4s_060
float64
H9_00hb4s_061
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H9_00hb4s_062
float64
H9_00hb4s_063
float64
H9_00hb4s_064
float64
H9_00hb4s_065
float64
H9_00hb4s_066
float64
H9_00hb4s_067
float64
H9_00hb4s_068
float64
H9_00hb4s_069
float64
H9_00hb4s_070
float64
H9_00hb4s_071
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H9_00hb4s_072
float64
H9_00hb4s_073
float64
H9_00hb4s_074
float64
H9_00hb4s_075
float64
H9_00hb4s_076
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H9_00hb4s_077
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H9_00hb4s_078
float64
H9_00hb4s_079
float64
H9_00hb4s_080
float64
H9_00hb4s_081
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H9_00hb4s_082
float64
H9_00hb4s_083
float64
H9_00hb4s_084
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H9_00hb4s_085
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H9_00hb4s_086
float64
H9_00hb4s_087
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H9_00hb4s_088
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H9_00hb4s_089
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H9_00hb4s_094
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H9_00hb4s_096
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H9_12h_001
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H9_12h_008
float64
H9_12h_009
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H9_12h_010
float64
H9_12h_011
float64
H9_12h_012
float64
H9_12h_013
float64
H9_12h_014
float64
H9_12h_015
float64
H9_12h_016
float64
H9_12h_017
float64
H9_12h_018
float64
H9_12h_019
float64
H9_12h_021
float64
H9_12h_022
float64
H9_12h_023
float64
H9_12h_024
float64
H9_12h_025
float64
H9_12h_026
float64
H9_12h_027
float64
H9_12h_029
float64
H9_12h_030
float64
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H9_96h_184
float64
H9_96h_185
float64
H9_96h_186
float64
H9_96h_187
float64
H9_96h_188
float64
H9_96h_189
float64
H9_96h_190
float64
H9_96h_192
float64
LUM
0
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8.118227
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NFATC3
4.584743
6.282682
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2.289707
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0
7.739908
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2.75575
1.034154
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5.857678
0
0
0
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0
5.729551
0
3.662065
1.513393
0
6.523396
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3.861663
6.311238
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0
0
4.061969
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0
5.402855
6.922107
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5.080081
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6.703544
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5.310954
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4.375978
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3.644398
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3.591142
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4.527076
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2.791403
3.124164
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0
4.549329
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0
3.338139
4.761208
0
4.026953
3.508298
5.025725
3.852664
1.715219
3.641164
2.860473
1.968559
3.681751
0
2.283397
0
5.102714
1.168895
2.016294
3.005621
0
2.285158
2.955545
2.660407
2.133773
3.971591
0
5.66328
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3.932651
0
0
1.786719
0.789726
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0
0
0
3.808739
0
5.106929
5.080895
1.556938
3.26979
6.102263
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2.815462
2.362558
0
3.493567
4.101232
4.430669
4.414293
0.636278
3.635488
0
0.695623
0
5.378495
3.907219
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2.171376
5.466735
1.272777
6.884851
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4.313889
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3.572115
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MGST2
3.532022
2.909914
0
4.819003
3.21531
0
4.267721
0
0
0
0
0
3.806034
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0
3.426895
0
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0
0
0
3.100052
0
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0
3.675842
3.018313
1.08059
0
0
4.440034
3.749032
3.554324
4.485985
0
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0
3.848782
0
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3.409062
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4.483679
0
1.239167
0
0
4.54485
0
0
0.511354
2.303895
0
0
0
4.372585
0
0
0
4.414358
0
4.078457
0
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0
0
0
1.634604
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3.379998
0
0
0.93121
0.789741
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0
0
0
2.203318
1.945922
3.296479
0
1.727759
0
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0
1.985461
0
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0
2.890453
0
3.375216
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0
3.523895
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0
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0
3.035827
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2.618722
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5.350156
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2.668195
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3.818037
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4.645458
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0
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0
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3.616286
4.921895
0.720216
3.507677
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4.256885
0
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4.461212
0
4.778045
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5.341846
0
6.313274
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4.841495
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4.656491
2.644328
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2.634709
0
3.447284
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0
4.049393
6.219773
3.032221
5.990413
5.241118
6.622917
7.943906
2.51016
5.703481
3.460584
3.767044
0
3.322196
3.635078
2.173289
2.499652
5.224708
0
4.913592
1.341737
4.946709
4.169234
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5.092045
4.263578
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3.634618
2.846999
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0
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4.661331
1.792393
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4.851926
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5.390825
0
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6.452634
0
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3.314038
0
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3.936826
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7.084571
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7.082877
5.615526
2.801782
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5.846736
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3.743392
0
6.249834
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4.877228
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6.30794
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5.982827
0
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0
5.339889
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5.503731
6.577537
COPS3
7.59668
7.736347
8.25409
7.995023
7.868787
7.928909
7.960096
8.127048
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8.003822
6.9885
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8.718409
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8.291807
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8.206423
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6.957041
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7.751715
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0
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0
7.820454
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0
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4.852905
0
4.919705
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2.721872
8.453583
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0
6.696012
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End of preview.