Alexander Wirth commited on
Commit
418ffc5
·
1 Parent(s): cf9d62f

fix: update all files to v2.2 — 10 fields, 5 sources, correct pricing, new DOI

Browse files

- README.md: Remove Early Bird pricing artifacts, fix pricing to €699/€1,349/€1,699
- README.md: Update DOI to 10.5281/zenodo.15083493, fix enrichment count 4→5
- README.md: Enterprise tier now mailto:founder@ethno-api.com (no Stripe link)
- MANIFEST_v2.json: Update to v2.2 schema, correct SHA-256 hashes
- METHODOLOGY.md: Add v2.2 file integrity entries, fix merge description
- UPDATE_POLICY.md: Update to v2.2, add PubChem as 5th enrichment source
- quickstart.ipynb: Fix BibTeX (v2.2), remove Early Bird pricing table

Files changed (5) hide show
  1. MANIFEST_v2.json +6 -6
  2. METHODOLOGY.md +4 -2
  3. README.md +21 -21
  4. UPDATE_POLICY.md +3 -2
  5. quickstart.ipynb +22 -1262
MANIFEST_v2.json CHANGED
@@ -1,13 +1,13 @@
1
  {
2
- "schema_version": "2.1",
3
- "export_timestamp": "2026-03-20T00:00:00Z",
4
  "record_count": 76907,
5
  "unique_chemicals": 24746,
6
  "unique_species": 2313,
7
- "sha256_json": "ae86ba33d76273dc52330ca5d75234d93f8a6d3a8db106186d39470a3c1a0db0",
8
- "sha256_parquet": "5b1050529c3e2f372f4910b5647724b6449064c3aa3ae9ece103176293919b87",
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  "file_sizes": {
10
- "json_mb": 24.5,
11
  "parquet_kb": 1194.7
12
  },
13
  "fields": [
@@ -42,5 +42,5 @@
42
  "PubChem REST API (CID + CanonicalSMILES, 2026)"
43
  ],
44
  "license": "CC BY 4.0",
45
- "zenodo_doi": "10.5281/zenodo.19053087"
46
  }
 
1
  {
2
+ "schema_version": "2.2",
3
+ "export_timestamp": "2026-03-22T14:29:03Z",
4
  "record_count": 76907,
5
  "unique_chemicals": 24746,
6
  "unique_species": 2313,
7
+ "sha256_json": "7cb5719f9763f84f1cb8176b462d51fd9df5750e7cfa78e497263b7631ebba13",
8
+ "sha256_parquet": "118d28bf08b784868b60fc1445a0fdd6817d5d8a492015c51d975cf8e8e5a132",
9
  "file_sizes": {
10
+ "json_mb": 25.4,
11
  "parquet_kb": 1194.7
12
  },
13
  "fields": [
 
42
  "PubChem REST API (CID + CanonicalSMILES, 2026)"
43
  ],
44
  "license": "CC BY 4.0",
45
+ "zenodo_doi": "10.5281/zenodo.15083493"
46
  }
METHODOLOGY.md CHANGED
@@ -87,7 +87,7 @@
87
 
88
  ### 5. Merge & Export (`master_export_v2.py`)
89
 
90
- - Merges all 4 enrichment outputs + PubChem SMILES/CID into unified dataset
91
  - Exports: JSON (indent=2), Parquet (Snappy compressed), MANIFEST (SHA-256 checksums + statistics)
92
  - 3-pass verification: record count, schema validation, checksum match
93
 
@@ -168,7 +168,7 @@ All enrichment scripts are available in the repository:
168
  | Version | Date | Fields | Records | Changes |
169
  |---|---|---|---|---|
170
  | v1.0 | 2026-01 | 5 (chemical, plant_species, application, dosage, pubmed_mentions_2026) | 104,388 | Initial release with PubMed enrichment |
171
- | v2.0 | 2026-03 | 8 (+clinical_trials_count_2026, chembl_bioactivity_count, patent_count_since_2020) | 76,907 | 4-source enrichment, DQA audit (noise compounds + duplicates removed: 104,388 → 76,907), checkpoint system |
172
  | v2.1 | 2026-03 | 10 (+pubchem_cid, canonical_smiles) | 76,907 | PubChem CID + SMILES enrichment (10,484 chemicals resolved, 71.8% record coverage — corrected to 42.4% in v2.2) |
173
  | v2.2 | 2026-03 | 10 (same schema) | 76,907 | Stereo-prefix normalization for CT matching (+2 compounds), corrected SMILES coverage reporting (42.4% of unique chemicals), local CT XML matching replaces API |
174
 
@@ -183,5 +183,7 @@ All enrichment scripts are available in the repository:
183
  | `ethno_dataset_2026_v2.1_FINAL.json` | 24.5 MB | `ae86ba33d76273dc52330ca5d75234d93f8a6d3a8db106186d39470a3c1a0db0` |
184
  | `ethno_dataset_2026_v2.2.json` | 25.4 MB | `7cb5719f9763f84f1cb8176b462d51fd9df5750e7cfa78e497263b7631ebba13` |
185
  | `ethno_dataset_2026_v2.2.parquet` | 1.2 MB | `118d28bf08b784868b60fc1445a0fdd6817d5d8a492015c51d975cf8e8e5a132` |
 
 
186
 
187
  Export timestamp: `2026-03-22T14:29:03Z` (v2.2 final)
 
87
 
88
  ### 5. Merge & Export (`master_export_v2.py`)
89
 
90
+ - Merges all 5 enrichment outputs (PubMed, ClinicalTrials, ChEMBL, Patents, PubChem SMILES/CID) into unified dataset
91
  - Exports: JSON (indent=2), Parquet (Snappy compressed), MANIFEST (SHA-256 checksums + statistics)
92
  - 3-pass verification: record count, schema validation, checksum match
93
 
 
168
  | Version | Date | Fields | Records | Changes |
169
  |---|---|---|---|---|
170
  | v1.0 | 2026-01 | 5 (chemical, plant_species, application, dosage, pubmed_mentions_2026) | 104,388 | Initial release with PubMed enrichment |
171
+ | v2.0 | 2026-03 | 8 (+clinical_trials_count_2026, chembl_bioactivity_count, patent_count_since_2020) | 76,907 | 4-source enrichment, DQA audit (noise compounds + duplicates removed: 104,388 → 76,907), checkpoint system. Superseded by v2.1/v2.2. |
172
  | v2.1 | 2026-03 | 10 (+pubchem_cid, canonical_smiles) | 76,907 | PubChem CID + SMILES enrichment (10,484 chemicals resolved, 71.8% record coverage — corrected to 42.4% in v2.2) |
173
  | v2.2 | 2026-03 | 10 (same schema) | 76,907 | Stereo-prefix normalization for CT matching (+2 compounds), corrected SMILES coverage reporting (42.4% of unique chemicals), local CT XML matching replaces API |
174
 
 
183
  | `ethno_dataset_2026_v2.1_FINAL.json` | 24.5 MB | `ae86ba33d76273dc52330ca5d75234d93f8a6d3a8db106186d39470a3c1a0db0` |
184
  | `ethno_dataset_2026_v2.2.json` | 25.4 MB | `7cb5719f9763f84f1cb8176b462d51fd9df5750e7cfa78e497263b7631ebba13` |
185
  | `ethno_dataset_2026_v2.2.parquet` | 1.2 MB | `118d28bf08b784868b60fc1445a0fdd6817d5d8a492015c51d975cf8e8e5a132` |
186
+ | `ethno_dataset_2026_v2.2.json` | 25.4 MB | `7cb5719f9763f84f1cb8176b462d51fd9df5750e7cfa78e497263b7631ebba13` |
187
+ | `ethno_dataset_2026_v2.2.parquet` | 1.2 MB | `118d28bf08b784868b60fc1445a0fdd6817d5d8a492015c51d975cf8e8e5a132` |
188
 
189
  Export timestamp: `2026-03-22T14:29:03Z` (v2.2 final)
README.md CHANGED
@@ -61,7 +61,7 @@ dataset_info:
61
  config_name: default
62
  ---
63
 
64
- > **Early Access — First 10 buyers: 57 % off.** Single €299 · Team €549 · Enterprise €899. [→ ethno-api.com](https://ethno-api.com)
65
 
66
  <div align="center">
67
 
@@ -70,7 +70,7 @@ dataset_info:
70
  If you use this dataset in your research, please cite:
71
 
72
  ```
73
- Wirth, A. (2026). USDA Phytochemical Database — Enriched v2.2 (Sample). Zenodo. https://doi.org/10.5281/zenodo.19053087
74
  ```
75
 
76
  ---
@@ -84,11 +84,11 @@ Wirth, A. (2026). USDA Phytochemical Database — Enriched v2.2 (Sample). Zenodo
84
  [![Full Dataset](https://img.shields.io/badge/Full%20Dataset-76%2C907%20rows-blue)](https://ethno-api.com)
85
  [![Format](https://img.shields.io/badge/Format-JSON%20%2B%20Parquet-orange)](https://ethno-api.com)
86
  [![HuggingFace](https://img.shields.io/badge/%F0%9F%A4%97%20HuggingFace-Dataset-yellow)](https://huggingface.co/datasets/wirthal1990-tech/USDA-Phytochemical-Database-JSON)
87
- [![DOI](https://zenodo.org/badge/doi/10.5281/zenodo.19053087.svg)](https://zenodo.org/records/19053087)
88
 
89
- [**Free 400-Row Sample ↓**](#quickstart) · [**Single €299 Early Bird →**](https://buy.stripe.com/7sY9AS1KncAX5Pk0zCebu06?utm_source=github&utm_medium=readme&utm_campaign=launch_2026_03) · [**Team €549 Early Bird →**](https://buy.stripe.com/14AdR8bkX8kHelQ0zCebu07?utm_source=github&utm_medium=readme&utm_campaign=launch_2026_03) · [**Enterprise €899 Early Bird →**](https://buy.stripe.com/fZu00iex930nelQ824ebu08?utm_source=github&utm_medium=readme&utm_campaign=launch_2026_03)
90
 
91
- > **Enrichment status (March 2026):** All four enrichment layers (PubMed, ClinicalTrials.gov, ChEMBL, PatentsView) are **complete and final**. The free 400-row sample contains real enrichment values.
92
 
93
  </div>
94
 
@@ -96,7 +96,7 @@ Wirth, A. (2026). USDA Phytochemical Database — Enriched v2.2 (Sample). Zenodo
96
 
97
  | Records | Compounds | Species | Enrichment Layers |
98
  |--------:|----------:|--------:|------------------:|
99
- | **76,907** | **24,746** | **2,313** | **4** |
100
 
101
  ---
102
 
@@ -132,9 +132,9 @@ The full IP Discrepancy Report, including Freedom-to-Operate indicators and comp
132
 
133
  | Tier | Price | Includes | Purchase |
134
  |------|-------|----------|----------|
135
- | **Single Entity** | **€299** netto (Early Bird, reg. €699) | JSON + Parquet + SHA-256 Manifest. 1 juristische Person, interne Nutzung. Perpetual license. | [**Buy Now →**](https://buy.stripe.com/7sY9AS1KncAX5Pk0zCebu06?utm_source=github&utm_medium=readme&utm_campaign=launch_2026_03) |
136
- | **Team** | **€549** netto (Early Bird, reg. €1.349) | Alles aus Single + `duckdb_queries.sql` (20 Queries, 5 Kategorien) + `compound_priority_score.py` + 4 Pre-computed Views (Top-500 nach PubMed, Trials, Patent-Dichte, Anti-Inflammatory Panel). Unbegrenzte interne Nutzer einer juristischen Person. | [**Buy Now →**](https://buy.stripe.com/14AdR8bkX8kHelQ0zCebu07?utm_source=github&utm_medium=readme&utm_campaign=launch_2026_03) |
137
- | **Enterprise** | **€899** netto (Early Bird, reg. €1.699) | Alles aus Team + `snowflake_load.sql` + `chromadb_ingest.py` + `pinecone_ingest.py` + `embedding_guide.md` (ClinicalBERT, RAG-Pipelines) + Compound Opportunity Matrix + Clinical Pipeline Gaps CSV + Pre-chunked RAG JSONL. Multi-Entity / Konzernnutzung, interne Produktintegration erlaubt. | [**Buy Now →**](https://buy.stripe.com/fZu00iex930nelQ824ebu08?utm_source=github&utm_medium=readme&utm_campaign=launch_2026_03) |
138
 
139
  > Gemäß § 19 UStG wird keine Umsatzsteuer berechnet. Alle Preise netto. One-time purchase — keine Subscription, keine wiederkehrenden Kosten.
140
 
@@ -148,7 +148,7 @@ Normalising and cross-referencing **24,746 phytochemicals** across multiple auth
148
  |------|------:|---------------:|
149
  | USDA cleaning + normalization + enrichment + exports + QA | **48–60h** | **~$4,080–$5,100** |
150
 
151
- **This dataset: €299 Early Bird (regular €699). No subscription. No API calls. Download link sent instantly after payment. Valid for 72 hours. See ethno-api.com.**
152
 
153
  ---
154
 
@@ -240,8 +240,8 @@ Below is a real record from the dataset — QUERCETIN, one of the most-studied p
240
  }
241
  ```
242
 
243
- All 76,907 records contain all 10 schema fields. The 4 enrichment columns are always non-null; `pubchem_cid` and `canonical_smiles` are filled for 42.4% of unique compounds (10,484 of 24,746 resolved via PubChem PUG REST); `application` (~50% null) and `dosage` (~87% null) reflect USDA source gaps. Unresolved compounds are phytochemical trivial names, mixture descriptions, or non-specific ethnobotanical terms not indexed in PubChem by name.
244
- The free 400-row sample contains real, final enrichment values across all four layers.
245
 
246
  ## File Manifest
247
 
@@ -250,8 +250,8 @@ The free 400-row sample contains real, final enrichment values across all four l
250
  | `ethno_sample_400.json` | 108 KB | JSON | Free (this repo) |
251
  | `ethno_sample_400.parquet` | 20 KB | Parquet | Free (this repo) |
252
  | `quickstart.ipynb` | 9 KB | Notebook | Free (this repo) |
253
- | `ethno_dataset_2026_v2.json` | ~16 MB | JSON | Included in all tiers |
254
- | `ethno_dataset_2026_v2.parquet` | ~800 KB | Parquet | Included in all tiers |
255
  | `MANIFEST_v2.json` (SHA-256) | ~1 KB | JSON | Included in all tiers |
256
  | `duckdb_queries.sql` (20 Queries) | ~13 KB | SQL | Team + Enterprise |
257
  | `compound_priority_score.py` | ~5 KB | Python | Team + Enterprise |
@@ -287,11 +287,11 @@ Enrichment methodology is documented in [`METHODOLOGY.md`](METHODOLOGY.md). Sour
287
  | Version | Records | Schema | Status |
288
  |---------|--------:|--------|--------|
289
  | v1.0 | 104,388 | 5 columns (USDA baseline) | Deprecated |
290
- | v2.0 | 76,907 | 8 columns (+ PubMed, ClinicalTrials, ChEMBL, Patents) | Superseded |
291
  | v2.1 | 76,907 | 10 columns (+ PubChem CID, Canonical SMILES) | Superseded |
292
  | **v2.2** | **76,907** | **10 columns (stereo-prefix CT normalization, corrected SMILES coverage)** | **Current** |
293
 
294
- The free sample (`ethno_sample_400.json`) uses the v2.0 schema with final enrichment values across all four layers.
295
 
296
  ## Data Attribution
297
 
@@ -318,9 +318,9 @@ Ethno-API is the deterministic answer to these pipeline requirements.
318
  ## License & Commercial Access
319
 
320
  - **Free 400-row sample**: [CC BY 4.0](https://creativecommons.org/licenses/by/4.0/) — use for evaluation, academic research, and prototyping.
321
- - **Single Entity License — €299 Early Bird** (reg. €699) one-time: [**Buy →**](https://buy.stripe.com/7sY9AS1KncAX5Pk0zCebu06?utm_source=github&utm_medium=readme&utm_campaign=launch_2026_03) — 1 legal entity, internal use, perpetual. No redistribution.
322
- - **Team License — €549 Early Bird** (reg. €1.349) one-time: [**Buy →**](https://buy.stripe.com/14AdR8bkX8kHelQ0zCebu07?utm_source=github&utm_medium=readme&utm_campaign=launch_2026_03) — all employees of 1 legal entity, unlimited internal users, includes analytics toolkit.
323
- - **Enterprise License — €899 Early Bird** (reg. €1.699) one-time: [**Buy →**](https://buy.stripe.com/fZu00iex930nelQ824ebu08?utm_source=github&utm_medium=readme&utm_campaign=launch_2026_03) — multi-entity / group use, internal product integration rights, full RAG integration toolkit.
324
 
325
  > Gemäß § 19 UStG wird keine Umsatzsteuer berechnet.
326
 
@@ -331,12 +331,12 @@ Ethno-API is the deterministic answer to these pipeline requirements.
331
  year = {2026},
332
  publisher = {Ethno-API},
333
  url = {https://ethno-api.com},
334
- doi = {10.5281/zenodo.19053087},
335
  note = {76,907 records, 24,746 unique chemicals, 2,313 plant species, 10-column schema with PubMed, ClinicalTrials, ChEMBL, PatentsView, PubChem CID/SMILES enrichment}
336
  }
337
  ```
338
 
339
- [![DOI](https://zenodo.org/badge/doi/10.5281/zenodo.19053087.svg)](https://zenodo.org/records/19053087)
340
 
341
  ## Contact
342
 
 
61
  config_name: default
62
  ---
63
 
64
+ > **Full dataset available:** Single €699 · Team €1,349 · Enterprise €1,699. [→ ethno-api.com](https://ethno-api.com)
65
 
66
  <div align="center">
67
 
 
70
  If you use this dataset in your research, please cite:
71
 
72
  ```
73
+ Wirth, A. (2026). USDA Phytochemical Database — Enriched v2.2 (Sample). Zenodo. https://doi.org/10.5281/zenodo.15083493
74
  ```
75
 
76
  ---
 
84
  [![Full Dataset](https://img.shields.io/badge/Full%20Dataset-76%2C907%20rows-blue)](https://ethno-api.com)
85
  [![Format](https://img.shields.io/badge/Format-JSON%20%2B%20Parquet-orange)](https://ethno-api.com)
86
  [![HuggingFace](https://img.shields.io/badge/%F0%9F%A4%97%20HuggingFace-Dataset-yellow)](https://huggingface.co/datasets/wirthal1990-tech/USDA-Phytochemical-Database-JSON)
87
+ [![DOI](https://zenodo.org/badge/doi/10.5281/zenodo.15083493.svg)](https://zenodo.org/records/15083493)
88
 
89
+ [**Free 400-Row Sample ↓**](#quickstart) · [**Single €699 →**](https://buy.stripe.com/7sY9AS1KncAX5Pk0zCebu06?utm_source=github&utm_medium=readme&utm_campaign=launch_2026_03) · [**Team €1,349 →**](https://buy.stripe.com/14AdR8bkX8kHelQ0zCebu07?utm_source=github&utm_medium=readme&utm_campaign=launch_2026_03) · [**Enterprise €1,699 →**](mailto:founder@ethno-api.com)
90
 
91
+ > **Enrichment status (March 2026):** All five enrichment layers (PubMed, ClinicalTrials.gov, ChEMBL, PatentsView, PubChem) are **complete and final**. The free 400-row sample contains real enrichment values.
92
 
93
  </div>
94
 
 
96
 
97
  | Records | Compounds | Species | Enrichment Layers |
98
  |--------:|----------:|--------:|------------------:|
99
+ | **76,907** | **24,746** | **2,313** | **5** |
100
 
101
  ---
102
 
 
132
 
133
  | Tier | Price | Includes | Purchase |
134
  |------|-------|----------|----------|
135
+ | **Single Entity** | **€699** netto | JSON + Parquet + SHA-256 Manifest. 1 juristische Person, interne Nutzung. Perpetual license. | [**Buy Now →**](https://buy.stripe.com/7sY9AS1KncAX5Pk0zCebu06?utm_source=github&utm_medium=readme&utm_campaign=launch_2026_03) |
136
+ | **Team** | **€1,349** netto | Alles aus Single + `duckdb_queries.sql` (20 Queries, 5 Kategorien) + `compound_priority_score.py` + 4 Pre-computed Views (Top-500 nach PubMed, Trials, Patent-Dichte, Anti-Inflammatory Panel). Unbegrenzte interne Nutzer einer juristischen Person. | [**Buy Now →**](https://buy.stripe.com/14AdR8bkX8kHelQ0zCebu07?utm_source=github&utm_medium=readme&utm_campaign=launch_2026_03) |
137
+ | **Enterprise** | **€1,699** netto | Alles aus Team + `snowflake_load.sql` + `chromadb_ingest.py` + `pinecone_ingest.py` + `embedding_guide.md` (ClinicalBERT, RAG-Pipelines) + Compound Opportunity Matrix + Clinical Pipeline Gaps CSV + Pre-chunked RAG JSONL. Multi-Entity / Konzernnutzung, interne Produktintegration erlaubt. | [**Contact →**](mailto:founder@ethno-api.com) |
138
 
139
  > Gemäß § 19 UStG wird keine Umsatzsteuer berechnet. Alle Preise netto. One-time purchase — keine Subscription, keine wiederkehrenden Kosten.
140
 
 
148
  |------|------:|---------------:|
149
  | USDA cleaning + normalization + enrichment + exports + QA | **48–60h** | **~$4,080–$5,100** |
150
 
151
+ **This dataset: €699. No subscription. No API calls. Download link sent instantly after payment. Valid for 72 hours. See ethno-api.com.**
152
 
153
  ---
154
 
 
240
  }
241
  ```
242
 
243
+ All 76,907 records contain all 10 schema fields. The 4 integer enrichment columns (`pubmed_mentions_2026`, `clinical_trials_count_2026`, `chembl_bioactivity_count`, `patent_count_since_2020`) are always non-null; `pubchem_cid` and `canonical_smiles` are filled for 42.4% of unique compounds (10,484 of 24,746 resolved via PubChem PUG REST); `application` (~50% null) and `dosage` (~87% null) reflect USDA source gaps. Unresolved compounds are phytochemical trivial names, mixture descriptions, or non-specific ethnobotanical terms not indexed in PubChem by name.
244
+ The free 400-row sample contains real, final enrichment values across all five layers.
245
 
246
  ## File Manifest
247
 
 
250
  | `ethno_sample_400.json` | 108 KB | JSON | Free (this repo) |
251
  | `ethno_sample_400.parquet` | 20 KB | Parquet | Free (this repo) |
252
  | `quickstart.ipynb` | 9 KB | Notebook | Free (this repo) |
253
+ | `ethno_dataset_2026_v2.2.json` | ~25 MB | JSON | Included in all tiers |
254
+ | `ethno_dataset_2026_v2.2.parquet` | ~1.2 MB | Parquet | Included in all tiers |
255
  | `MANIFEST_v2.json` (SHA-256) | ~1 KB | JSON | Included in all tiers |
256
  | `duckdb_queries.sql` (20 Queries) | ~13 KB | SQL | Team + Enterprise |
257
  | `compound_priority_score.py` | ~5 KB | Python | Team + Enterprise |
 
287
  | Version | Records | Schema | Status |
288
  |---------|--------:|--------|--------|
289
  | v1.0 | 104,388 | 5 columns (USDA baseline) | Deprecated |
290
+ | v2.0 | 76,907 | 8 columns (+ PubMed, ClinicalTrials, ChEMBL, Patents) | Deprecated |
291
  | v2.1 | 76,907 | 10 columns (+ PubChem CID, Canonical SMILES) | Superseded |
292
  | **v2.2** | **76,907** | **10 columns (stereo-prefix CT normalization, corrected SMILES coverage)** | **Current** |
293
 
294
+ The free sample (`ethno_sample_400.json`) uses the v2.2 schema with final enrichment values across all five layers.
295
 
296
  ## Data Attribution
297
 
 
318
  ## License & Commercial Access
319
 
320
  - **Free 400-row sample**: [CC BY 4.0](https://creativecommons.org/licenses/by/4.0/) — use for evaluation, academic research, and prototyping.
321
+ - **Single Entity License — €699** one-time: [**Buy →**](https://buy.stripe.com/7sY9AS1KncAX5Pk0zCebu06?utm_source=github&utm_medium=readme&utm_campaign=launch_2026_03) — 1 legal entity, internal use, perpetual. No redistribution.
322
+ - **Team License — €1,349** one-time: [**Buy →**](https://buy.stripe.com/14AdR8bkX8kHelQ0zCebu07?utm_source=github&utm_medium=readme&utm_campaign=launch_2026_03) — all employees of 1 legal entity, unlimited internal users, includes analytics toolkit.
323
+ - **Enterprise License — €1,699** one-time: [**Contact →**](mailto:founder@ethno-api.com) — multi-entity / group use, internal product integration rights, full RAG integration toolkit.
324
 
325
  > Gemäß § 19 UStG wird keine Umsatzsteuer berechnet.
326
 
 
331
  year = {2026},
332
  publisher = {Ethno-API},
333
  url = {https://ethno-api.com},
334
+ doi = {10.5281/zenodo.15083493},
335
  note = {76,907 records, 24,746 unique chemicals, 2,313 plant species, 10-column schema with PubMed, ClinicalTrials, ChEMBL, PatentsView, PubChem CID/SMILES enrichment}
336
  }
337
  ```
338
 
339
+ [![DOI](https://zenodo.org/badge/doi/10.5281/zenodo.15083493.svg)](https://zenodo.org/records/15083493)
340
 
341
  ## Contact
342
 
UPDATE_POLICY.md CHANGED
@@ -9,14 +9,15 @@ Next scheduled update: Q1 2027.
9
  - ClinicalTrials.gov API v2
10
  - ChEMBL REST API (with PubChem InChIKey fallback)
11
  - PatentsView REST API (USPTO)
 
12
 
13
  ## Versioning
14
- Current version: v2.0 (March 2026)
15
  All versions are tagged in this repository.
16
 
17
  ## Buyer Notifications
18
  All dataset buyers receive email notification when a new version is available.
19
- Buyers of v2.0 receive the v2.1 update free of charge.
20
 
21
  ## Breaking Changes
22
  Schema changes are announced minimum 30 days in advance via GitHub Discussions.
 
9
  - ClinicalTrials.gov API v2
10
  - ChEMBL REST API (with PubChem InChIKey fallback)
11
  - PatentsView REST API (USPTO)
12
+ - PubChem PUG REST API (CID + Canonical SMILES)
13
 
14
  ## Versioning
15
+ Current version: v2.2 (March 2026)
16
  All versions are tagged in this repository.
17
 
18
  ## Buyer Notifications
19
  All dataset buyers receive email notification when a new version is available.
20
+ Buyers of v2.0 or v2.1 receive the v2.2 update free of charge.
21
 
22
  ## Breaking Changes
23
  Schema changes are announced minimum 30 days in advance via GitHub Discussions.
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4387
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4388
  ]
 
3114
  "id": "cell-09",
3115
  "metadata": {},
3116
  "source": [
3117
+ "## Citation\n",
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
3118
  "\n",
3119
+ "```bibtex\n",
3120
+ "@misc{ethno_api_v2.2_2026,\n",
3121
+ " title = {USDA Phytochemical \\& Ethnobotanical Database --- Enriched v2.2},\n",
3122
+ " author = {Wirth, Alexander},\n",
3123
+ " year = {2026},\n",
3124
+ " publisher = {Ethno-API},\n",
3125
+ " url = {https://ethno-api.com},\n",
3126
+ " note = {76,907 records, 24,746 unique chemicals, 2,313 plant species,\n",
3127
+ " 10-column schema with PubMed, ClinicalTrials, ChEMBL, and PatentsView enrichment}\n",
3128
+ "}\n",
3129
+ "```\n",
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
3130
  "\n",
3131
+ "**Links:** [ethno-api.com](https://ethno-api.com) · [GitHub](https://github.com/wirthal1990-tech/USDA-Phytochemical-Database-JSON) · [HuggingFace](https://huggingface.co/datasets/wirthal1990-tech/USDA-Phytochemical-Database-JSON)\n",
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
3132
  "\n",
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
3133
  "\n",
3134
+ "---\n",
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
3135
  "\n",
3136
+ "## Purchase Full Dataset\n",
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
3137
  "\n",
3138
+ "| Tier | Price | |\n",
3139
+ "|------|-------|---|\n",
3140
+ "| Single Entity | €699 netto | [**Buy →**](https://buy.stripe.com/7sY9AS1KncAX5Pk0zCebu06?utm_source=github&utm_medium=notebook&utm_campaign=launch_2026_03) |\n",
3141
+ "| Team | €1,349 netto | [**Buy →**](https://buy.stripe.com/14AdR8bkX8kHelQ0zCebu07?utm_source=github&utm_medium=notebook&utm_campaign=launch_2026_03) |\n",
3142
+ "| Enterprise | €1,699 netto | [**Contact →**](mailto:founder@ethno-api.com) |\n",
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
3143
  "\n",
3144
+ "> Gemäß § 19 UStG keine Umsatzsteuer.\n",
3145
+ ""
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
3146
  ]
3147
  }
3148
  ]