RUN_006 S4: Update README with 3-tier Stripe pricing links
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README.md
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config_name: default
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---
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<div align="center">
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# USDA Phytochemical & Ethnobotanical Database — Enriched v2.0
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[](https://huggingface.co/datasets/wirthal1990-tech/USDA-Phytochemical-Database-JSON)
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[](https://ethno-api.com)
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[](https://ethno-api.com)
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[ · [**
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</div>
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| Column | Type | Nulls | Description |
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|--------|------|-------|-------------|
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| `chemical` | `string` | 0% | Standardised compound name (USDA Duke
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| `plant_species` | `string` | 0% | Binomial Latin species name |
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| `application` | `string` | ~40% | Traditional medicinal application (e.g.
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| `dosage` | `string` | ~55% | Reported dosage, concentration, or IC50 value |
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| `pubmed_mentions_2026` | `int32` | 0% | Total PubMed publications mentioning this compound (March 2026 snapshot) |
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| `clinical_trials_count_2026` | `int32` | 0% | ClinicalTrials.gov study count per compound (March 2026) |
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| `chembl_bioactivity_count` | `int32` | 0% | ChEMBL documented bioactivity measurement count |
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| `patent_count_since_2020` | `int32` | 0% | US patents since 2020-01-01 mentioning compound (USPTO PatentsView) |
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## Why Not Build This Yourself?
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Normalising and cross-referencing 24,771 phytochemicals against four authoritative databases is not a weekend project:
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## Why This Dataset Exists
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Large language models hallucinate botanical taxonomy. A biotech team
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The raw USDA Dr. Duke
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## Quickstart
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print(f"Rows: {table.num_rows} Memory: {table.nbytes / 1e6:.1f} MB")
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```
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### DuckDB (analytical queries
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```python
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import duckdb
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result = duckdb.sql("""
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SELECT
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chemical,
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MAX(pubmed_mentions_2026)
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MAX(clinical_trials_count_2026) AS trial_count,
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MAX(chembl_bioactivity_count)
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COUNT(DISTINCT plant_species)
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FROM read_json_auto('
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WHERE application ILIKE '%anti-inflam%'
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GROUP BY chemical
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ORDER BY trial_count DESC
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LIMIT 20
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```python
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from datasets import load_dataset
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# Load the free 400-row sample directly from HuggingFace Hub
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ds = load_dataset(
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"wirthal1990-tech/USDA-Phytochemical-Database-JSON",
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split="sample",
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| File | Size | Format | Access |
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|------|------|--------|--------|
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| `ethno_sample_400.json` |
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| `ethno_sample_400.parquet` |
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| `
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| `ethno_dataset_2026_v2.
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## Data Sources & Methodology
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| Source | Access | Date | Method |
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|--------|--------|------|--------|
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| [USDA Dr. Duke
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| [NCBI PubMed](https://pubmed.ncbi.nlm.nih.gov/) | E-utilities API | March 2026 | `esearch` per compound, total publication count |
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| [ClinicalTrials.gov](https://clinicaltrials.gov/) | v2 API | March 2026 | Study count per compound name |
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| [ChEMBL](https://www.ebi.ac.uk/chembl/) | REST API (v34) | March 2026 | Bioactivity measurement count via molecule search |
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| [USPTO PatentsView](https://patentsview.org/) | REST API v1
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All enrichment scripts are deterministic, checkpoint-resumable, and respect API rate limits. Source code available upon request for enterprise customers.
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## License & Commercial Access
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- **Free 400-row sample**: [CC BY-NC 4.0](https://creativecommons.org/licenses/by-nc/4.0/) — use for evaluation, academic research, and prototyping.
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- **
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## Citation
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config_name: default
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---
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+
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<div align="center">
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# USDA Phytochemical & Ethnobotanical Database — Enriched v2.0
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[](https://huggingface.co/datasets/wirthal1990-tech/USDA-Phytochemical-Database-JSON)
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[](https://ethno-api.com)
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[](https://ethno-api.com)
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[](https://huggingface.co/datasets/wirthal1990-tech/USDA-Phytochemical-Database-JSON)
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[**Free 400-Row Sample ↓**](#quickstart) · [**Single Entity €699 →**](https://buy.stripe.com/00w6oGgFh58v6Toeqsebu02) · [**Team €1.349 →**](https://buy.stripe.com/dRm7sK9cP1Wj0v06Y0ebu03) · [**Enterprise €1.699 →**](https://buy.stripe.com/dRm28q0Gj1WjdhM6Y0ebu04)
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</div>
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| Column | Type | Nulls | Description |
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|--------|------|-------|-------------|
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| `chemical` | `string` | 0% | Standardised compound name (USDA Duke’s nomenclature) |
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| `plant_species` | `string` | 0% | Binomial Latin species name |
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| `application` | `string` | ~40% | Traditional medicinal application (e.g. “Antiinflammatory”) |
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| `dosage` | `string` | ~55% | Reported dosage, concentration, or IC50 value |
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| `pubmed_mentions_2026` | `int32` | 0% | Total PubMed publications mentioning this compound (March 2026 snapshot) |
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| `clinical_trials_count_2026` | `int32` | 0% | ClinicalTrials.gov study count per compound (March 2026) |
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| `chembl_bioactivity_count` | `int32` | 0% | ChEMBL documented bioactivity measurement count |
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| `patent_count_since_2020` | `int32` | 0% | US patents since 2020-01-01 mentioning compound (USPTO PatentsView) |
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---
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## Pricing & Licensing
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| Tier | Price | Includes | Purchase |
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|------|-------|----------|----------|
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| **Single Entity** | **€699** netto | JSON + Parquet + SHA-256 Manifest. 1 juristische Person, interne Nutzung. Perpetual license. | [**Buy Now →**](https://buy.stripe.com/00w6oGgFh58v6Toeqsebu02) |
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| **Team** | **€1.349** netto | Alles aus Single + `duckdb_queries.sql` (20 Queries, 5 Kategorien) + `compound_priority_score.py` + 4 Pre-computed Views (Top-500 nach PubMed, Trials, Patent-Dichte, Anti-Inflammatory Panel). Unbegrenzte interne Nutzer einer juristischen Person. | [**Buy Now →**](https://buy.stripe.com/dRm7sK9cP1Wj0v06Y0ebu03) |
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| **Enterprise** | **€1.699** netto | Alles aus Team + `snowflake_load.sql` + `chromadb_ingest.py` + `pinecone_ingest.py` + `embedding_guide.md` (ClinicalBERT, RAG-Pipelines) + Compound Opportunity Matrix + Clinical Pipeline Gaps CSV + Pre-chunked RAG JSONL. Multi-Entity / Konzernnutzung, interne Produktintegration erlaubt. | [**Buy Now →**](https://buy.stripe.com/dRm28q0Gj1WjdhM6Y0ebu04) |
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> Gemäß § 19 UStG wird keine Umsatzsteuer berechnet. Alle Preise netto. One-time purchase — keine Subscription, keine wiederkehrenden Kosten.
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---
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## Why Not Build This Yourself?
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Normalising and cross-referencing 24,771 phytochemicals against four authoritative databases is not a weekend project:
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## Why This Dataset Exists
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Large language models hallucinate botanical taxonomy. A biotech team’s RAG pipeline confidently outputting “Quercetin found in 450 species at 2.3 mg/g” sounds plausible — but the real number of species in our data is 215, and dosage varies by three orders of magnitude depending on the plant part.
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The raw USDA Dr. Duke’s database is spread across 16 relational tables. Joining them correctly requires understanding non-obvious foreign keys, handling >40% null values in application fields, and normalising species names against accepted binomial nomenclature. Most teams give up after a week.
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## Quickstart
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print(f"Rows: {table.num_rows} Memory: {table.nbytes / 1e6:.1f} MB")
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```
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### DuckDB (analytical queries — sample included)
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```python
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import duckdb
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result = duckdb.sql("""
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SELECT
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chemical,
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MAX(pubmed_mentions_2026) AS pubmed_score,
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MAX(clinical_trials_count_2026) AS trial_count,
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MAX(chembl_bioactivity_count) AS bioassays,
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COUNT(DISTINCT plant_species) AS species_count
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FROM read_json_auto('ethno_sample_400.json')
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GROUP BY chemical
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ORDER BY trial_count DESC
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LIMIT 20
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```python
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from datasets import load_dataset
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ds = load_dataset(
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"wirthal1990-tech/USDA-Phytochemical-Database-JSON",
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split="sample",
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| File | Size | Format | Access |
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|------|------|--------|--------|
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| `ethno_sample_400.json` | 108 KB | JSON | Free (this repo) |
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| `ethno_sample_400.parquet` | 20 KB | Parquet | Free (this repo) |
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| `quickstart.ipynb` | 9 KB | Notebook | Free (this repo) |
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| `ethno_dataset_2026_v2.json` | ~18 MB | JSON | Included in all tiers |
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| `ethno_dataset_2026_v2.parquet` | ~900 KB | Parquet | Included in all tiers |
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| `MANIFEST_v2.json` (SHA-256) | ~1 KB | JSON | Included in all tiers |
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| `duckdb_queries.sql` (20 Queries) | ~13 KB | SQL | Team + Enterprise |
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| `compound_priority_score.py` | ~5 KB | Python | Team + Enterprise |
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| `snowflake_load.sql` | ~6 KB | SQL | Enterprise |
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| `chromadb_ingest.py` | ~6 KB | Python | Enterprise |
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| `pinecone_ingest.py` | ~6 KB | Python | Enterprise |
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| `embedding_guide.md` | ~7 KB | Markdown | Enterprise |
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## Data Sources & Methodology
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| Source | Access | Date | Method |
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|--------|--------|------|--------|
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| [USDA Dr. Duke’s Phytochemical and Ethnobotanical Databases](https://phytochem.nal.usda.gov/) | Public domain | 2026 | Full 16-table PostgreSQL import, normalized |
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| [NCBI PubMed](https://pubmed.ncbi.nlm.nih.gov/) | E-utilities API | March 2026 | `esearch` per compound, total publication count |
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| [ClinicalTrials.gov](https://clinicaltrials.gov/) | v2 API | March 2026 | Study count per compound name |
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| [ChEMBL](https://www.ebi.ac.uk/chembl/) | REST API (v34) | March 2026 | Bioactivity measurement count via molecule search |
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| [USPTO PatentsView](https://patentsview.org/) | REST API v1 | March 2026 | US patents since 2020-01-01 mentioning compound |
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All enrichment scripts are deterministic, checkpoint-resumable, and respect API rate limits. Source code available upon request for enterprise customers.
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## License & Commercial Access
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- **Free 400-row sample**: [CC BY-NC 4.0](https://creativecommons.org/licenses/by-nc/4.0/) — use for evaluation, academic research, and prototyping.
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- **Single Entity License — €699** one-time: [**Buy →**](https://buy.stripe.com/00w6oGgFh58v6Toeqsebu02) — 1 legal entity, internal use, perpetual. No redistribution.
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- **Team License — €1.349** one-time: [**Buy →**](https://buy.stripe.com/dRm7sK9cP1Wj0v06Y0ebu03) — all employees of 1 legal entity, unlimited internal users, includes analytics toolkit.
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- **Enterprise License — €1.699** one-time: [**Buy →**](https://buy.stripe.com/dRm28q0Gj1WjdhM6Y0ebu04) — multi-entity / group use, internal product integration rights, full RAG integration toolkit.
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> Gemäß § 19 UStG wird keine Umsatzsteuer berechnet.
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## Citation
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