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Datasets:
wjiaqi
/
evo-final

Tasks:
Other
Modalities:
Tabular
Text
Formats:
parquet
Size:
100K - 1M
Tags:
protein
complex
protein-protein-interaction
self-supervised
preference
swap
Libraries:
Datasets
pandas
Polars
License:
Dataset card Data Studio Files
xet
 Community
1
evo-final / data

Commit History

  1. Rebuild swap_complexes: drop identical pairs, identity floor 0.7, rebalance val/test to train difficulty (gentle cap, no chain leakage)

    wjiaqi
    Verified signature
    0bd76c2

  2. Rebuild swap_complexes: drop identical pairs, identity floor 0.7, rebalance val/test to train difficulty (gentle cap, no chain leakage)

    wjiaqi
    Verified signature
    e07c072

  1. v3.7: unify preference_pairs (combine within+cross); leak-free chain-level verified

    wjiaqi
    Verified signature
    a7b651e

  2. v3.6: rescue all 72,510 swap_complexes rows via cluster co-occurrence components; exact 80/10/10 split, leak-free

    wjiaqi
    Verified signature
    5aceb83

  3. v3.5: combine within+cross into unified swap_complexes & swap_relationships; reseed splits (cluster 75/12.5/12.5, seed 0089) for ~80/10/10 row split

    wjiaqi
    Verified signature
    3e21558

  4. v3.5: combine within+cross into unified swap_complexes & swap_relationships; reseed splits (cluster 75/12.5/12.5, seed 0089) for ~80/10/10 row split

    wjiaqi
    Verified signature
    15132fc

  5. v3.4: drop same-species rows and TimeTree no-data pairs; refresh splits

    wjiaqi
    Verified signature
    7d6e2bc

  1. Make train/val/test proper HF splits: per-split parquets + YAML data_files

    wjiaqi
    Verified signature
    5021b2e

  2. Make train/val/test proper HF splits: per-split parquets + YAML data_files

    wjiaqi
    Verified signature
    9c307c7

  3. add train/val/test split column to L3 + L4 (mmseqs2 0.3 PID cluster, 80/10/10)

    wjiaqi
    Verified signature
    c9e4079

  4. add train/val/test split column to L3 + L4 (mmseqs2 0.3 PID cluster, 80/10/10)

    wjiaqi
    Verified signature
    1e4cf7e

  5. add train/val/test split column to L3 + L4 (mmseqs2 0.3 PID cluster, 80/10/10)

    wjiaqi
    Verified signature
    9320a17

  6. filter L2/L3/L4 to seq_identity_A>=0.8 AND seq_identity_B>=0.8

    wjiaqi
    Verified signature
    a2475d1

  1. v3 final: 5-layer (natives / L2 swap_relationships / L3 swap_complexes wjiaqi/evo-style / L4 preference_pairs). 3 identity metrics, species+gene labels, within-source + cross-source variants.

    wjiaqi
    Verified signature
    a5cc6f9

  2. v3 L2 + L3: swap_relationships (79,241) + preference_pairs (316,964) with seq_identity_A/B + TimeTree divergence_mya labels

    wjiaqi
    Verified signature
    73fd3c0

  1. natives-filtered: drop 124 conglab rows with unmappable NCBI genus (1 Aeorestes + 123 na:na:na lineages); 50,481 -> 50,357

    wjiaqi
    Verified signature
    ae0a2a5

  2. v3 — two L1 configs: natives (85,554, no species filter) + natives-filtered (50,481, Opisthokonta only)

    wjiaqi
    Verified signature
    bc4fb6c

  3. v3 — L1 natives only (ortholog-filtered, Opisthokonta); drop v2 L2/L3 (broken same-organism random swaps); L2/L3 to follow when STRING Phase 1 finishes

    wjiaqi
    Verified signature
    ae90f14

  4. Restructure as 3-layer dataset: natives + swap_relationships + preference_pairs (afcdb-final + conglab)

    wjiaqi
    Verified signature
    a3669c9

  5. Add combined parquet (afcdb 142,598 + conglab 63,612 = 206,210 rows)

    wjiaqi
    Verified signature
    263cda8