Update Genome_database.py
Browse files- Genome_database.py +12 -1
Genome_database.py
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@@ -6,9 +6,15 @@ import os
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import gzip
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import re
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class GenomeDataset(datasets.GeneratorBasedBuilder):
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VERSION = datasets.Version("1.1.0")
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-
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def _info(self):
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return datasets.DatasetInfo(
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features=datasets.Features({
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@@ -30,6 +36,10 @@ class GenomeDataset(datasets.GeneratorBasedBuilder):
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urls_filepath = dl_manager.download_and_extract('urlfile.txt')
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with open(urls_filepath) as urls_file:
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downloaded_files = [line.rstrip() for line in urls_file]
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train_files = downloaded_files[:int(len(downloaded_files) * 0.8)] # first 80% for training
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test_files = downloaded_files[int(len(downloaded_files) * 0.8):] # last 20% for testing
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@@ -44,6 +54,7 @@ class GenomeDataset(datasets.GeneratorBasedBuilder):
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)
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]
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def _generate_examples(self, filepaths: List[str]) -> Tuple[str, Dict[str, Any]]:
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split_regex = re.compile('-')
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id_ = 0
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import gzip
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import re
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class GenomeDatasetConfig(datasets.BuilderConfig):
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def __init__(self, num_urls=None, **kwargs):
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super(GenomeDatasetConfig, self).__init__(**kwargs)
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self.num_urls = num_urls
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class GenomeDataset(datasets.GeneratorBasedBuilder):
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VERSION = datasets.Version("1.1.0")
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BUILDER_CONFIG_CLASS = GenomeDatasetConfig
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def _info(self):
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return datasets.DatasetInfo(
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features=datasets.Features({
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urls_filepath = dl_manager.download_and_extract('urlfile.txt')
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with open(urls_filepath) as urls_file:
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downloaded_files = [line.rstrip() for line in urls_file]
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num_urls = self.config.num_urls or len(downloaded_files)
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downloaded_files = downloaded_files[:num_urls]
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train_files = downloaded_files[:int(len(downloaded_files) * 0.8)] # first 80% for training
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test_files = downloaded_files[int(len(downloaded_files) * 0.8):] # last 20% for testing
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)
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]
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+
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def _generate_examples(self, filepaths: List[str]) -> Tuple[str, Dict[str, Any]]:
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split_regex = re.compile('-')
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id_ = 0
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