Update Genome_database.py
Browse files- Genome_database.py +21 -21
Genome_database.py
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@@ -16,11 +16,11 @@ class GenomeDatasetConfig(datasets.BuilderConfig):
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**kwargs: keyword arguments forwarded to super.
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"""
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super().__init__(**kwargs)
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self.num_urls = num_urls
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class GenomeDataset(datasets.GeneratorBasedBuilder):
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BUILDER_CONFIG_CLASS = GenomeDatasetConfig
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VERSION = datasets.Version("1.1.0")
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def _info(self):
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return datasets.DatasetInfo(
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@@ -40,25 +40,24 @@ class GenomeDataset(datasets.GeneratorBasedBuilder):
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)
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def _split_generators(self, dl_manager: datasets.DownloadManager) -> List[datasets.SplitGenerator]:
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test_files = downloaded_files[int(len(downloaded_files) * 0.8):] # last 20% for testing
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def _generate_examples(self, filepaths: List[str]) -> Tuple[str, Dict[str, Any]]:
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split_regex = re.compile('-')
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@@ -113,5 +112,6 @@ class GenomeDataset(datasets.GeneratorBasedBuilder):
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'start_postion': start_position,
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'end_position': end_position
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}
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id_+= 1
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**kwargs: keyword arguments forwarded to super.
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"""
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super().__init__(**kwargs)
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self.num_urls = num_urls
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class GenomeDataset(datasets.GeneratorBasedBuilder):
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VERSION = datasets.Version("1.1.0")
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BUILDER_CONFIG_CLASS = GenomeDatasetConfig
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def _info(self):
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return datasets.DatasetInfo(
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)
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def _split_generators(self, dl_manager: datasets.DownloadManager) -> List[datasets.SplitGenerator]:
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urls_filepath = dl_manager.download_and_extract('urlfile.txt')
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with open(urls_filepath) as urls_file:
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downloaded_files = [line.rstrip() for line in urls_file]
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if self.config.num_urls is not None:
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downloaded_files = downloaded_files[:self.config.num_urls]
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train_files = downloaded_files[:int(len(downloaded_files) * 0.8)] # first 80% for training
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test_files = downloaded_files[int(len(downloaded_files) * 0.8):] # last 20% for testing
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return [
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datasets.SplitGenerator(
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name=datasets.Split.TRAIN,
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gen_kwargs={"filepaths": train_files}
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),
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datasets.SplitGenerator(
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name=datasets.Split.TEST,
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gen_kwargs={"filepaths": test_files}
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)
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]
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def _generate_examples(self, filepaths: List[str]) -> Tuple[str, Dict[str, Any]]:
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split_regex = re.compile('-')
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'start_postion': start_position,
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'end_position': end_position
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}
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id_ += 1
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