wyxu commited on
Commit
e49c6f2
·
1 Parent(s): 9e805fb

Update Genome_database.py

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  1. Genome_database.py +16 -13
Genome_database.py CHANGED
@@ -27,20 +27,23 @@ class GenomeDataset(datasets.GeneratorBasedBuilder):
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  )
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  def _split_generators(self, dl_manager: datasets.DownloadManager) -> List[datasets.SplitGenerator]:
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- downloaded_files = dl_manager.download_and_extract('urlfile.txt')
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- train_files = downloaded_files[:int(len(downloaded_files) * 0.8)] # first 80% for training
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- test_files = downloaded_files[int(len(downloaded_files) * 0.8):] # last 20% for testing
 
 
 
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- return [
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- datasets.SplitGenerator(
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- name=datasets.Split.TRAIN,
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- gen_kwargs={"filepaths": train_files},
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- ),
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- datasets.SplitGenerator(
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- name=datasets.Split.TEST,
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- gen_kwargs={"filepaths": test_files},
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- ),
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- ]
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  def _generate_examples(self, filepaths: List[str]) -> Tuple[str, Dict[str, Any]]:
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  split_regex = re.compile('-')
 
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  )
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  def _split_generators(self, dl_manager: datasets.DownloadManager) -> List[datasets.SplitGenerator]:
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+ with open("urlfile.txt", "r") as file:
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+ urls = [line.strip() for line in file]
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+ downloaded_files = dl_manager.download_and_extract(urls)
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+
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+ train_files = downloaded_files[:int(len(downloaded_files) * 0.8)] # first 80% for training
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+ test_files = downloaded_files[int(len(downloaded_files) * 0.8):] # last 20% for testing
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+ return [
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+ datasets.SplitGenerator(
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+ name=datasets.Split.TRAIN,
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+ gen_kwargs={"filepaths": train_files}
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+ ),
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+ datasets.SplitGenerator(
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+ name=datasets.Split.TEST,
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+ gen_kwargs={"filepaths": test_files}
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+ )
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+ ]
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  def _generate_examples(self, filepaths: List[str]) -> Tuple[str, Dict[str, Any]]:
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  split_regex = re.compile('-')