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notebooks/02_benchmark_analysis.ipynb

@@ -367,35 +367,7 @@
    "execution_count": null,
    "metadata": {},
    "outputs": [],
-   "source": [
-    "for space_label, space_val in [(\"Univariate\", \"uni\"), (\"Multivariate\", \"multi\")]:\n",
-    "    sub = df[df[\"input_space\"] == space_val].sort_values(\"uniformity\").copy()  # more negative = better\n",
-    "    if sub.empty:\n",
-    "        continue\n",
-    "\n",
-    "    methods = sub[\"method\"].tolist()\n",
-    "    colors = method_colors(methods)\n",
-    "\n",
-    "    fig = go.Figure()\n",
-    "    fig.add_trace(go.Bar(\n",
-    "        x=methods, y=sub[\"uniformity\"],\n",
-    "        marker_color=colors,\n",
-    "        text=sub[\"uniformity\"].round(2).astype(str),\n",
-    "        textposition=\"outside\",\n",
-    "    ))\n",
-    "\n",
-    "    # Highlight collapse zone\n",
-    "    fig.add_hrect(y0=-0.5, y1=0, fillcolor=\"#ff000015\", line_width=0,\n",
-    "                  annotation_text=\"Collapse zone\", annotation_position=\"top right\")\n",
-    "\n",
-    "    fig.update_layout(\n",
-    "        **LAYOUT_DEFAULTS,\n",
-    "        title=f\"Uniformity (embedding spread) -- {space_label}\",\n",
-    "        yaxis_title=\"Uniformity (more negative = better)\",\n",
-    "        showlegend=False,\n",
-    "    )\n",
-    "    fig.show()"
-   ]
+   "source": "for space_label, space_val in [(\"Univariate\", \"uni\"), (\"Multivariate\", \"multi\")]:\n    sub = df[df[\"input_space\"] == space_val].sort_values(\"uniformity\").copy()  # more negative = better\n    if sub.empty:\n        continue\n\n    methods = sub[\"method\"].tolist()\n    colors = method_colors(methods)\n\n    fig = go.Figure()\n    fig.add_trace(go.Bar(\n        x=methods, y=sub[\"uniformity\"],\n        marker_color=colors,\n        text=sub[\"uniformity\"].round(2).astype(str),\n        textposition=\"outside\",\n    ))\n\n    # Highlight collapse zone\n    fig.add_hrect(y0=-0.5, y1=0, fillcolor=\"rgba(255,0,0,0.08)\", line_width=0,\n                  annotation_text=\"Collapse zone\", annotation_position=\"top right\")\n\n    fig.update_layout(\n        **LAYOUT_DEFAULTS,\n        title=f\"Uniformity (embedding spread) -- {space_label}\",\n        yaxis_title=\"Uniformity (more negative = better)\",\n        showlegend=False,\n    )\n    fig.show()"
   },
   {
    "cell_type": "markdown",