| { |
| "meta_info": { |
| "case_id": "case41_09", |
| "bench_subset": "NeuroBench-Sleep", |
| "difficult": 1.5, |
| "original_dataset": "SHHS1" |
| }, |
| "agent_input": { |
| "data_path": "data/sleep/SHHS1_05.edf", |
| "label_path": "data/sleep/SHHS1_05.npy", |
| "instruction": "Use the sleep file and paired labels to calculate sleep mean SpO2, wake mean SpO2, and sleep minimum SpO2. Convert SaO2 to 1 Hz by per-second median; accept 50-100%, remove isolated <=2-second outliers more than 4 points from a centered 9-second median, interpolate only bounded internal gaps <=30 seconds, apply a centered 9-second median, and exclude all remaining missing seconds. Treat N1/N2/N3/R as sleep and W as wake. Report percentages. SHHS1: SaO2=oxygen saturation; THOR RES/ABDO RES=effort; NEW AIR/AIRFLOW=airflow." |
| }, |
| "eval_config": { |
| "parser_prompt": "### ROLE\nYou are a precise JSON Extraction Engine for sleep medicine reports.\n\n### TASK\nExtract sleep mean SpO2, wake mean SpO2, and sleep minimum SpO2.\n\n### STRICT CONSTRAINTS (MANDATORY)\n1. Output ONLY a valid JSON object.\n2. Do not include Markdown, explanations, units, or extra fields.\n3. Keys must be EXACTLY \"sleep_mean_spo2\", \"wake_mean_spo2\", and \"sleep_min_spo2\".\n4. Values must be FLOAT values or null.\n5. Return null for a missing or unclear value.\n\n### OUTPUT TEMPLATE\n{\"sleep_mean_spo2\": <float|null>, \"wake_mean_spo2\": <float|null>, \"sleep_min_spo2\": <float|null>}", |
| "metrics": [ |
| { |
| "metric_id": "sleep_mean_oxygen_saturation_accuracy", |
| "type": "numeric_check", |
| "target_key": "sleep_mean_spo2", |
| "weight": 33, |
| "params": { |
| "gt_value": 94.84243082865771, |
| "tolerance": 4.742121541432886 |
| } |
| }, |
| { |
| "metric_id": "wake_mean_oxygen_saturation_accuracy", |
| "type": "numeric_check", |
| "target_key": "wake_mean_spo2", |
| "weight": 33, |
| "params": { |
| "gt_value": 95.96471019336792, |
| "tolerance": 4.798235509668396 |
| } |
| }, |
| { |
| "metric_id": "sleep_min_oxygen_saturation_accuracy", |
| "type": "numeric_check", |
| "target_key": "sleep_min_spo2", |
| "weight": 34, |
| "params": { |
| "gt_value": 84.70099572079334, |
| "tolerance": 4.235049786039667 |
| } |
| } |
| ] |
| } |
| } |
|
|
