xcwangpsu commited on
Commit
8148c26
·
verified ·
1 Parent(s): 8b828c7

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +18 -6
README.md CHANGED
@@ -10,9 +10,10 @@ size_categories:
10
  - 10K<n<100K
11
  pretty_name: MedMKG
12
  ---
13
- # MedMKG: Medical Multimodal Knowledge Graph
14
 
15
- We introduce **MedMKG**, a **Med**ical **M**ultimodal **K**nowledge **G**raph that seamlessly fuses clinical concepts with medical images.
 
 
16
  MedMKG is constructed via a multi-stage pipeline that accurately identifies and disambiguates medical concepts while extracting their interrelations.
17
  To ensure the conciseness of the resulting graph, we further employ a pruning strategy based on our novel Neighbor-aware Filtering (NaF) algorithm.
18
 
@@ -21,7 +22,7 @@ To ensure the conciseness of the resulting graph, we further employ a pruning st
21
  ## 📂 Provided Files
22
 
23
  This repository contains:
24
- - `knowledge_graph.csv` — biomedical triplets: Head, Relation, Tail, Head_Name, Tail_Name
25
  - `image_mapping.csv` — image ID to **relative path** mappings
26
 
27
  **Note:** The images themselves are **not included**. Users must download MIMIC-CXR-JPG separately and specify their local path.
@@ -57,11 +58,10 @@ To use the image data, you **must** request access and agree to the data use agr
57
  Below is a demo script to load and link the knowledge graph with your local image data:
58
 
59
  ```python
60
- from huggingface_hub import hf_hub_download
61
  import pandas as pd
62
 
63
- kg_path = hf_hub_download(repo_id="xcwangpsu/MedMKG", filename="MedMKG.csv", repo_type="dataset")
64
- mapping_path = hf_hub_download(repo_id="xcwangpsu/MedMKG", filename="image_mapping.csv", repo_type="dataset")
65
 
66
  # Load CSVs
67
  kg_df = pd.read_csv(kg_path)
@@ -82,3 +82,15 @@ kg_df["Tail_Path"] = kg_df["Tail"].map(iid_to_path)
82
 
83
  print(kg_df.head())
84
 
 
 
 
 
 
 
 
 
 
 
 
 
 
10
  - 10K<n<100K
11
  pretty_name: MedMKG
12
  ---
 
13
 
14
+ # RADM: Radiological Multimodal Knowledge Graph
15
+
16
+ We introduce **RADM**, a a **Rad**iological **M**ultimodal Knowledge Graph that seamlessly fuses clinical concepts with medical images.
17
  MedMKG is constructed via a multi-stage pipeline that accurately identifies and disambiguates medical concepts while extracting their interrelations.
18
  To ensure the conciseness of the resulting graph, we further employ a pruning strategy based on our novel Neighbor-aware Filtering (NaF) algorithm.
19
 
 
22
  ## 📂 Provided Files
23
 
24
  This repository contains:
25
+ - `RADM.csv` — biomedical triplets: Head, Relation, Tail, Head_Name, Tail_Name
26
  - `image_mapping.csv` — image ID to **relative path** mappings
27
 
28
  **Note:** The images themselves are **not included**. Users must download MIMIC-CXR-JPG separately and specify their local path.
 
58
  Below is a demo script to load and link the knowledge graph with your local image data:
59
 
60
  ```python
 
61
  import pandas as pd
62
 
63
+ kg_path = "RADM.csv"
64
+ mapping_path = "image_mapping.csv"
65
 
66
  # Load CSVs
67
  kg_df = pd.read_csv(kg_path)
 
82
 
83
  print(kg_df.head())
84
 
85
+
86
+ ```
87
+
88
+ ## Benchmark Instruction
89
+
90
+ We cover codes for three downstream tasks detailed in our paper, including link prediction, knowledge-augmented visual question answering, and knowledge-augmented text-image retrieval. You may check the three folders and execute the following:
91
+
92
+ ```bash
93
+ python main.py
94
+ ```
95
+
96
+ after specifying your local paths of data files.