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README.md
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## Dataset Description
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This dataset contains
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### Dataset Summary
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The Scientific Coding
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- Code
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- Test cases
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### Supported Tasks
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##
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- **C++**: 159 samples (65.2%)
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- **Python**: 85 samples (34.8%)
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### Data Fields
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Each sample
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- `org` (string): Organization name (e.g., "einsteintoolkit", "Qiskit", "openmm")
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- `repo` (string): Repository name
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- `number` (int): Issue/PR number
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- `state` (string): State of the issue (e.g., "open", "closed")
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- `title` (string): Title of the issue/PR
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- `body` (string): Description of the issue
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- `base` (dict): Base branch information with keys:
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- `label`: Branch label
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- `ref`: Branch reference
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- `sha`: Commit SHA
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- `resolved_issues` (list): List of related issues with:
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- `number`: Issue number
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- `title`: Issue title
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- `body`: Issue description
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- `fix_patch` (string): Git diff/patch for the fix
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- `test_patch` (string): Git diff/patch for tests
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- `doc_patch` (string): Git diff/patch for documentation
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- `tag` (string): Additional tags
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- `number_interval` (string): Number interval information
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- `lang` (string): Programming language (cpp, python)
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- `language` (string): Same as lang
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- `instance_id` (string): Unique instance identifier
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- `fixed_tests` (dict): Test results for fixed code
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- `p2p_tests` (dict): Patch-to-pass tests
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- `f2p_tests` (dict): Fail-to-pass tests
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- `s2p_tests` (dict): Skip-to-pass tests
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- `n2p_tests` (dict): None-to-pass tests
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- `run_result` (dict): Execution results with counts of passed/failed/skipped tests
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- `test_patch_result` (dict): Test patch execution results
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- `fix_patch_result` (dict): Fix patch execution results
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- `hints` (string): Hints for solving the issue
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- `count_new_files` (int): Number of new files added
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- `count_new_entities` (int): Number of new code entities
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- `workdir` (string): Working directory path
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- `fix_meta_info` (dict): Metadata about the fix
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- `test_meta_info` (dict): Metadata about tests
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- `doc_meta_info` (dict): Metadata about documentation
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- `meta_info` (dict): General metadata
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- `pre_commands` (list): Commands to run before testing
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### Data Instances
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An example instance (truncated for brevity):
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```json
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{
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"org": "einsteintoolkit",
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"repo": "Cactus",
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"number": 1,
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"state": "open",
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"title": "Add missing LinearExtrapBnd.c in CactusExamples/SampleBoundary",
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"body": "This PR adds the missing source file LinearExtrapBnd.c to complete the CactusExamples/SampleBoundary thorn implementation.",
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"language": "cpp",
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"instance_id": "einsteintoolkit__cactus_1",
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"fix_patch": "diff --git a/arrangements/CactusExamples/SampleBoundary/src/LinearExtrapBnd.c ...",
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"run_result": {
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"passed_count": 1,
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"failed_count": 0,
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"skipped_count": 0
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}
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}
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```
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#
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|-------------|-------|-------------|
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| openmm | 54 | High-performance molecular dynamics simulation |
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| pyscf | 47 | Python-based Simulations of Chemistry Framework |
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| rdkit | 46 | Cheminformatics and machine learning software |
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| einsteintoolkit | 40 | Computational infrastructure for numerical relativity and astrophysics |
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| Qiskit | 38 | Open-source quantum computing framework |
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| AMReX-Codes | 19 | Block-structured adaptive mesh refinement framework |
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###
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###
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1. Loading the original dataset using the HuggingFace `datasets` library
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2. Extracting only the `json_dump` field from each sample
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3. Converting to JSONL format for efficient streaming and processing
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## Considerations for Using the Data
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###
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###
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The dataset may have the following biases:
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- Overrepresentation of certain programming languages (C++ and Python)
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- Focus on specific scientific domains (physics, chemistry, quantum computing)
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## Additional Information
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### Dataset Curators
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This
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### Licensing Information
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Please refer to the original
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### Citation Information
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If you use this dataset, please cite the original source:
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```bibtex
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@dataset{
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title={Scientific Coding
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author={xinshuo},
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year={2024},
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url={https://huggingface.co/datasets/xinshuo/
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}
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```
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### Contributions
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For questions or issues
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## Usage Example
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```python
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import json
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# Read and process the dataset
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with open('dataset_json_dumps.jsonl', 'r') as f:
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for line in f:
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sample = json.loads(line)
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print(f"Issue: {sample['title']}")
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print(f"Language: {sample['language']}")
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print(f"Organization: {sample['org']}")
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print("---")
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```
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Or use with HuggingFace datasets:
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```python
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from datasets import load_dataset
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dataset = load_dataset("xinshuo/test_jsonl", data_files="dataset_json_dumps.jsonl")
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```
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---
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dataset_info:
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features:
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- name: question_id
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dtype: string
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- name: question_type
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dtype: string
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- name: description
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dtype: string
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- name: content
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dtype: string
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- name: environment
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dtype: string
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- name: answer
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dtype: string
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- name: test
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dtype: string
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- name: scoring_config
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dtype: string
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splits:
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- name: msb_type
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num_bytes: 15728640
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num_examples: 244
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- name: et_type
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num_bytes: 709558272
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num_examples: 1085
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- name: scicobench_all
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num_bytes: 666894336
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num_examples: 1329
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download_size: 1392181248
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dataset_size: 1392181248
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configs:
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- config_name: default
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data_files:
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- split: msb_type
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path: data/msb_type.jsonl
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- split: et_type
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path: data/et_type.jsonl
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- split: scicobench_all
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path: data/scicobench_all.jsonl
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default: true
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---
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# Scientific Coding Benchmark Dataset
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## Dataset Description
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This dataset contains scientific coding questions and benchmarks from multiple sources, organized into three splits:
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- **msb_type** (244 samples): Multi-source Scientific Benchmark questions focusing on software engineering tasks
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- **et_type** (1,085 samples): Einstein Toolkit related coding questions with extensive documentation
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- **scicobench_all** (1,329 samples): Combined and unified format of all scientific coding questions
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### Dataset Summary
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The Scientific Coding Benchmark dataset is designed for evaluating AI models on real-world scientific software development tasks. Each sample includes:
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- Question descriptions and context
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- Code environment specifications
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- Test cases
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- Expected answers/solutions
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- Scoring configurations
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### Supported Tasks
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- **Scientific Code Generation**: Generate code solutions for scientific computing problems
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- **Software Engineering**: Fix bugs and implement features in scientific software
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- **Documentation Understanding**: Work with complex scientific software documentation
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- **Test-Driven Development**: Write code that passes specific test cases
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## Dataset Structure
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### Data Splits
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The dataset has three splits:
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| Split | Samples | Size | Description |
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|-------|---------|------|-------------|
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| msb_type | 244 | ~15 MB | Software engineering tasks from scientific projects |
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| et_type | 1,085 | ~677 MB | Einstein Toolkit code generation tasks |
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| scicobench_all | 1,329 | ~636 MB | Unified format combining all question types |
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**Default Split**: `msb_type`
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### Data Fields
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Each sample in the unified format contains:
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- `question_id` (string): Unique identifier for the question
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- `question_type` (string): Type/category of the question
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- `description` (string): High-level description of the task
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- `content` (string): Detailed question content and requirements
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- `environment` (string): Environment setup and configuration details
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- `answer` (string): Expected answer or solution
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- `test` (string): Test cases and validation logic
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- `scoring_config` (string): Configuration for scoring the solution
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### Data Loading
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```python
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from datasets import load_dataset
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# Load default split (msb_type)
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dataset = load_dataset("xinshuo/test_jsonl")
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# Load specific split
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msb_data = load_dataset("xinshuo/test_jsonl", split="msb_type")
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et_data = load_dataset("xinshuo/test_jsonl", split="et_type")
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all_data = load_dataset("xinshuo/test_jsonl", split="scicobench_all")
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# Access a sample
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print(msb_data[0])
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```
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## Source Data
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### MSB Type Questions (244 samples)
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Derived from the Scientific Coding SWE dataset, focusing on:
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- **Organizations**: einsteintoolkit, openmm, pyscf, rdkit, Qiskit, AMReX-Codes
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- **Languages**: C++ (65%), Python (35%)
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- **Tasks**: Bug fixes, feature implementation, code completion
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### ET Type Questions (1,085 samples)
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Einstein Toolkit code generation tasks including:
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- Thorn implementations
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- Interface definitions
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- Parameter configurations
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- Schedule definitions
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- Extensive documentation context
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### SciCoBench All (1,329 samples)
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Unified format combining both question types with standardized structure for comprehensive evaluation.
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## Considerations for Using the Data
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### Use Cases
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- Training code generation models for scientific computing
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- Benchmarking AI coding assistants on scientific software tasks
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- Research in automated scientific software development
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- Education in scientific programming practices
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### Limitations
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- Focus on specific scientific domains (physics, chemistry, quantum computing)
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- Primarily C++ and Python languages
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- May require domain-specific knowledge to evaluate correctly
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## Additional Information
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### Dataset Curators
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This dataset combines and unifies questions from:
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- xinshuo/Scientific_Coding_SWE_dataset
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- xinshuo/ET_1k
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### Licensing Information
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Please refer to the original datasets for licensing information.
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### Citation Information
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```bibtex
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@dataset{scicobench,
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title={Scientific Coding Benchmark Dataset},
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author={xinshuo},
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year={2024},
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url={https://huggingface.co/datasets/xinshuo/test_jsonl}
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}
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```
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### Contributions
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For questions or issues, please refer to the dataset repository on HuggingFace.
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| 178 |
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