#!/usr/bin/env bash set -euo pipefail ENV_NAME="${ENV_NAME:-biopacific}" PYTHON_VERSION="${PYTHON_VERSION:-3.12}" if ! command -v conda >/dev/null 2>&1; then echo "conda is not available in PATH." >&2 exit 1 fi if [[ "$(uname -s)" != "Linux" ]]; then echo "This installer currently supports Linux only." >&2 exit 1 fi CONDA_BASE="$(conda info --base)" source "${CONDA_BASE}/etc/profile.d/conda.sh" if conda env list | awk '{print $1}' | grep -Fxq "${ENV_NAME}"; then echo "Conda environment '${ENV_NAME}' already exists. Reusing it." else echo "Creating conda environment '${ENV_NAME}' with Python ${PYTHON_VERSION} ..." conda create -n "${ENV_NAME}" "python=${PYTHON_VERSION}" -y fi conda activate "${ENV_NAME}" ARCH="$(uname -m)" HOST_TRIPLE="" SYSROOT_PACKAGE="" case "${ARCH}" in x86_64|amd64) HOST_TRIPLE="x86_64-conda-linux-gnu" SYSROOT_PACKAGE="sysroot_linux-64" ;; aarch64|arm64) HOST_TRIPLE="aarch64-conda-linux-gnu" SYSROOT_PACKAGE="sysroot_linux-aarch64" ;; *) echo "Unsupported Linux architecture: ${ARCH}" >&2 exit 1 ;; esac echo "Installing conda-forge compiler toolchain and sysroot into '${ENV_NAME}' ..." conda install -n "${ENV_NAME}" -c conda-forge -y \ compilers \ c-compiler \ cxx-compiler \ binutils \ libgcc-ng \ libstdcxx-ng \ "${SYSROOT_PACKAGE}" # Reactivate so newly installed compiler activation hooks take effect. conda deactivate conda activate "${ENV_NAME}" export PATH="${CONDA_PREFIX}/bin:${PATH}" CC_CANDIDATE="${CONDA_PREFIX}/bin/${HOST_TRIPLE}-cc" CXX_CANDIDATE="${CONDA_PREFIX}/bin/${HOST_TRIPLE}-c++" if [[ -x "${CC_CANDIDATE}" ]]; then export CC="${CC_CANDIDATE}" elif command -v "${HOST_TRIPLE}-cc" >/dev/null 2>&1; then export CC="$(command -v "${HOST_TRIPLE}-cc")" fi if [[ -x "${CXX_CANDIDATE}" ]]; then export CXX="${CXX_CANDIDATE}" elif command -v "${HOST_TRIPLE}-c++" >/dev/null 2>&1; then export CXX="$(command -v "${HOST_TRIPLE}-c++")" fi if [[ -z "${CC:-}" || -z "${CXX:-}" ]]; then echo "Failed to locate conda compiler toolchain after installation." >&2 exit 1 fi if [[ -d "${CONDA_PREFIX}/${HOST_TRIPLE}/sysroot" ]]; then export CONDA_BUILD_SYSROOT="${CONDA_PREFIX}/${HOST_TRIPLE}/sysroot" fi export CMAKE_C_COMPILER="${CC}" export CMAKE_CXX_COMPILER="${CXX}" export CUDAHOSTCXX="${CXX}" export CMAKE_CUDA_HOST_COMPILER="${CXX}" export CCACHE_DISABLE=1 echo "Installing uv into '${ENV_NAME}' ..." python -m pip install --upgrade pip python -m pip install uv echo "Installing core Python packages with uv ..." uv pip install -U \ requests \ openai \ beautifulsoup4 \ selenium \ webdriver-manager \ numpy echo "Installing vLLM with uv ..." if ! uv pip install -U vllm --torch-backend=auto; then echo >&2 echo "vLLM installation failed." >&2 echo "Diagnostics:" >&2 echo " gcc: $(command -v gcc || true)" >&2 echo " g++: $(command -v g++ || true)" >&2 echo " CC: ${CC:-"(unset)"}" >&2 echo " CXX: ${CXX:-"(unset)"}" >&2 echo " CMAKE_C_COMPILER: ${CMAKE_C_COMPILER:-"(unset)"}" >&2 echo " CMAKE_CXX_COMPILER: ${CMAKE_CXX_COMPILER:-"(unset)"}" >&2 echo " CUDAHOSTCXX: ${CUDAHOSTCXX:-"(unset)"}" >&2 echo " sysroot: ${CONDA_BUILD_SYSROOT:-"(unset)"}" >&2 echo " gcc version: $(${CC} --version 2>/dev/null | sed -n '1p' || true)" >&2 echo " g++ version: $(${CXX} --version 2>/dev/null | sed -n '1p' || true)" >&2 exit 1 fi echo echo "Environment ready." echo " active env: ${ENV_NAME}" echo " arch: ${ARCH}" echo " python: $(python --version 2>&1)" echo " uv: $(uv --version 2>&1)" echo " gcc: $(command -v gcc)" echo " g++: $(command -v g++)" if [[ -n "${CC:-}" ]]; then echo " CC: ${CC}" fi if [[ -n "${CXX:-}" ]]; then echo " CXX: ${CXX}" fi if [[ -n "${CONDA_BUILD_SYSROOT:-}" ]]; then echo " CONDA_BUILD_SYSROOT: ${CONDA_BUILD_SYSROOT}" fi