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TidyMut

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Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 9 new columns ({'sigma', 'fitness', 'aa_seq', 'growthrate', 'WT', 'growthrate_sigma', 'Nham_aa', 'full_aa_seq', 'name'}) and 2 missing columns ({'label', 'mutation'}).

This happened while the csv dataset builder was generating data using

hf://datasets/xulab-research/TidyMut/ArchStabMS1E10/ArchStabMS_1E10.csv (at revision c5d2de032b40b5420bbfbb987215b4a66dd62479), ['hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/AntitoxinParD3/Antitoxin_ParD3.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/ArchStabMS1E10/ArchStabMS_1E10.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/CTXM/CTXM_ampicillin.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/CTXM/CTXM_cefotaxime.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/HumanMyoglobin/Human_Myoglobin.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/ProteinGym_DMS_substitutions/DMS_ProteinGym_substitutions.zip', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/RBD_ACE2/SARS-CoV-2-RBD_DMS_Omicron-EG5-FLip-BA286_bc_binding.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/RBD_ACE2/SARS-CoV-2-RBD_DMS_Omicron-XBB-BQ_bc_binding.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/RBD_ACE2/SARS-CoV-2-RBD_DMS_Omicron_bc_binding.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/RBD_ACE2/SARS-CoV-2-RBD_DMS_variants_bc_binding.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/RBD_ACE2/SARS-CoV-2-RBD_Delta_bc_binding.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/RBD_Antibody/SARS-CoV-2-RBD_MAP_AZ_Abs_scores.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/RBD_Antibody/SARS-CoV-2-RBD_MAP_HAARVI_sera_scores.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/RBD_Antibody/SARS-CoV-2-RBD_MAP_Moderna_scores.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/RBD_Antibody/SARS-CoV-2-RBD_MAP_Rockefeller_scores.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/RBD_Antibody/SARS-CoV-2-RBD_MAP_Vir_mAbs_scores.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/RBD_Antibody/SARS-CoV-2-RBD_MAP_clinical_Abs_scores.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/TrpB/TrpB.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/cDNA_proteolysis/Tsuboyama2023_Dataset2_Dataset3_20230416.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/dTm_datasets/S4346.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/dTm_datasets/S571.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/ddG_datasets/M1261.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/ddG_datasets/S461.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/ddG_datasets/S669.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/ddG_datasets/S783.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/ddG_datasets/S8754.csv']

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1890, in _prepare_split_single
                  writer.write_table(table)
                File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 760, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2272, in table_cast
                  return cast_table_to_schema(table, schema)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              aa_seq: string
              Nham_aa: int64
              WT: double
              fitness: double
              sigma: double
              growthrate: double
              growthrate_sigma: double
              name: string
              full_aa_seq: string
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 1301
              to
              {'mutation': Value('string'), 'label': Value('float64')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1342, in compute_config_parquet_and_info_response
                  parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
                                                                        ^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 907, in stream_convert_to_parquet
                  builder._prepare_split(split_generator=splits_generators[split], file_format="parquet")
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1739, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1892, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 9 new columns ({'sigma', 'fitness', 'aa_seq', 'growthrate', 'WT', 'growthrate_sigma', 'Nham_aa', 'full_aa_seq', 'name'}) and 2 missing columns ({'label', 'mutation'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/xulab-research/TidyMut/ArchStabMS1E10/ArchStabMS_1E10.csv (at revision c5d2de032b40b5420bbfbb987215b4a66dd62479), ['hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/AntitoxinParD3/Antitoxin_ParD3.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/ArchStabMS1E10/ArchStabMS_1E10.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/CTXM/CTXM_ampicillin.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/CTXM/CTXM_cefotaxime.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/HumanMyoglobin/Human_Myoglobin.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/ProteinGym_DMS_substitutions/DMS_ProteinGym_substitutions.zip', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/RBD_ACE2/SARS-CoV-2-RBD_DMS_Omicron-EG5-FLip-BA286_bc_binding.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/RBD_ACE2/SARS-CoV-2-RBD_DMS_Omicron-XBB-BQ_bc_binding.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/RBD_ACE2/SARS-CoV-2-RBD_DMS_Omicron_bc_binding.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/RBD_ACE2/SARS-CoV-2-RBD_DMS_variants_bc_binding.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/RBD_ACE2/SARS-CoV-2-RBD_Delta_bc_binding.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/RBD_Antibody/SARS-CoV-2-RBD_MAP_AZ_Abs_scores.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/RBD_Antibody/SARS-CoV-2-RBD_MAP_HAARVI_sera_scores.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/RBD_Antibody/SARS-CoV-2-RBD_MAP_Moderna_scores.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/RBD_Antibody/SARS-CoV-2-RBD_MAP_Rockefeller_scores.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/RBD_Antibody/SARS-CoV-2-RBD_MAP_Vir_mAbs_scores.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/RBD_Antibody/SARS-CoV-2-RBD_MAP_clinical_Abs_scores.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/TrpB/TrpB.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/cDNA_proteolysis/Tsuboyama2023_Dataset2_Dataset3_20230416.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/dTm_datasets/S4346.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/dTm_datasets/S571.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/ddG_datasets/M1261.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/ddG_datasets/S461.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/ddG_datasets/S669.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/ddG_datasets/S783.csv', 'hf://datasets/xulab-research/TidyMut@c5d2de032b40b5420bbfbb987215b4a66dd62479/ddG_datasets/S8754.csv']
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)