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  license: mit
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  ---
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  Out of **20,577** human proteins (from [UniProt human proteome](https://www.uniprot.org/proteomes/UP000005640)), sequences shorter than 20 amino acids or longer than 512 amino acids were removed, resulting in a set of **12,703** proteins. The uShuffle algorithm ([python pacakge](https://github.com/guma44/ushuffle)) was then used to shuffle these protein sequences while maintaining their doublet distribution. The very few sequences for which uShuffle failed to create a shuffled version were eliminated.
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  Afterwards, h-CD-HIT algorithm ([web server](http://weizhong-lab.ucsd.edu/cdhit-web-server/cgi-bin/index.cgi)) was used with three subsequent filter stages at pairwise identity cutoffs of 0.9, 0.5 and 0.1, resulting in a total of **11,658** sequences.
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  license: mit
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  ---
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+ # Dataset Description
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  Out of **20,577** human proteins (from [UniProt human proteome](https://www.uniprot.org/proteomes/UP000005640)), sequences shorter than 20 amino acids or longer than 512 amino acids were removed, resulting in a set of **12,703** proteins. The uShuffle algorithm ([python pacakge](https://github.com/guma44/ushuffle)) was then used to shuffle these protein sequences while maintaining their doublet distribution. The very few sequences for which uShuffle failed to create a shuffled version were eliminated.
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  Afterwards, h-CD-HIT algorithm ([web server](http://weizhong-lab.ucsd.edu/cdhit-web-server/cgi-bin/index.cgi)) was used with three subsequent filter stages at pairwise identity cutoffs of 0.9, 0.5 and 0.1, resulting in a total of **11,658** sequences.
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+
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+ # Citation
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+ If you use this dataset, please cite our paper:
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+ ```
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+ @article {
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+ author = {Geffen, Yaron and Ofran, Yanay and Unger, Ron},
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+ title = {DistilProtBert: A distilled protein language model used to distinguish between real proteins and their randomly shuffled counterparts},
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+ year = {2022},
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+ doi = {10.1101/2022.05.09.491157},
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+ URL = {https://www.biorxiv.org/content/early/2022/05/10/2022.05.09.491157},
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+ eprint = {https://www.biorxiv.org/content/early/2022/05/10/2022.05.09.491157.full.pdf},
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+ journal = {bioRxiv}
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+ }
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+ ```