seq2state-data / results /paper /paper_unmatched_oracle_context.csv
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result_type,comparison_scope,source_name,model_or_feature,scoreboard,evaluation_universe,auprc,ci_low,ci_high,auroc,mrr,recall_at_1,terms_ok_for_training
no_training_oracle_all_positive,context_only_unmatched_oracle_panel,alphagenome_counterfactual,mask_abs_delta_atac_target_promoter_sum,field_compatible_e2g,oracle_panel_all_positive,0.828159620239983,0.7850229718325503,0.8599206438948719,0.935803328619861,0.4788968376214441,0.4608166401256694,False
no_training_oracle_top250,context_only_unmatched_oracle_panel,alphagenome_counterfactual,mask_abs_delta_atac_target_promoter_sum,field_compatible_e2g,oracle_panel_top250,0.8723684756554031,0.8281220972867944,0.9103785477422854,0.9404742318660922,0.6440314857076606,0.6197696425385119,False
trainable,headline_full_benchmark,ensemble_proxy_residual_v1,ensemble_proxy_residual_v1,field_compatible_e2g,full_benchmark_138k,0.6515090087624756,0.5661086678015007,0.6865697996597102,0.9790334890567702,0.061211256965711225,0.06028474530388215,True
trainable,headline_full_benchmark,proxy_v2_rich_without_contact_field_tuned,proxy_v2_rich_without_contact_high_confidence_c0p01,field_compatible_e2g,full_benchmark_138k,0.6440052022657523,0.5547089564598817,0.6778361149718646,0.9750048596318548,0.06126253766453136,0.06055652110855766,True
trainable,headline_full_benchmark,proxy_v2_rich_without_contact,s2t_proxy_v2_without_contact_logistic,field_compatible_e2g,full_benchmark_138k,0.6379026011587243,0.5413702324732519,0.6664126618705554,0.9740552906401134,0.061167115599548086,0.06032768815661258,True
trainable,headline_full_benchmark,residual_proxy_v2_rich,molecular_residual_proxy_v2_rich_highconf_c003,field_compatible_e2g,full_benchmark_138k,0.6348907689473677,0.5590306631395894,0.6735981489515749,0.9767774922966519,0.06128058340183208,0.060513578255827226,True
trainable,headline_full_benchmark,field_leader,logistic_re2g_extended_highconf_c0003,field_compatible_e2g,full_benchmark_138k,0.628631319885814,0.5341459432465462,0.6553127006429378,0.9747429941038794,0.061225858252781,0.06033969934169876,True
trainable,headline_full_benchmark,residual_proxy_v2_rich_strict,molecular_residual_proxy_v2_rich_strict_broad_c001,field_compatible_e2g,full_benchmark_138k,0.6250163457987695,0.5469792941441491,0.6608264652715575,0.9760762471995207,0.06113827793511042,0.06028474530388215,True
trainable,headline_full_benchmark,residual_gate,residual_deepset_calibrated_gate_v1,field_compatible_e2g,full_benchmark_138k,0.6163264227871341,0.5266313119425095,0.6480876265690304,0.9746730330657309,0.061096759203177864,0.06028474530388215,True
trainable,headline_full_benchmark,proxy_v2_rich,logistic_counterfactual_proxy_v2_rich_highconf_c0003,field_compatible_e2g,full_benchmark_138k,0.6125041124174517,0.5290633063662551,0.6570206865275952,0.974317912199877,0.06118158839070072,0.06032768815661258,True
trainable,headline_full_benchmark,re2g_extended_features,logistic_re2g_extended_features_c0003,field_compatible_e2g,full_benchmark_138k,0.6083688535275066,0.5183509207116546,0.643067913068694,0.9761022410542315,0.061183753980867714,0.060324786228062,True
trainable,headline_full_benchmark,observed_hic_reabc,logistic_observed_hic_reabc_c00003,field_compatible_e2g,full_benchmark_138k,0.5951369515447468,0.5036320389701967,0.6293582473881493,0.976756996496561,0.061253185675807356,0.060548249915212835,True
trainable,headline_full_benchmark,proxy_v2,logistic_counterfactual_proxy_v2_highconf_c0003,field_compatible_e2g,full_benchmark_138k,0.5729880607329099,0.48144355328167326,0.6017969796559713,0.9714553934868022,0.06093903186539137,0.05984736177842298,True
trainable,headline_full_benchmark,proxy_v1,logistic_counterfactual_proxy_highconf_c0003,field_compatible_e2g,full_benchmark_138k,0.4898409463733236,0.42015021101416294,0.53985336818666,0.9635828110276844,0.06041709886111727,0.05921454430490667,True
trainable,headline_full_benchmark,distance_abc,logistic_distance_abc,field_compatible_e2g,full_benchmark_138k,0.3860212863390343,0.3147494869304455,0.4281753434726135,0.9500934309466634,0.05979169341173638,0.05784863437145854,True
no_training_oracle_all_positive,context_only_unmatched_oracle_panel,alphagenome_counterfactual,mask_abs_delta_atac_target_promoter_sum,high_confidence,oracle_panel_all_positive,0.8063631866202471,0.7628939287138962,0.8364749838692832,0.9201190782418058,0.4821433755541077,0.4601979940960451,False
no_training_oracle_top250,context_only_unmatched_oracle_panel,alphagenome_counterfactual,mask_abs_delta_atac_target_promoter_sum,high_confidence,oracle_panel_top250,0.8443147154977163,0.7997195512510122,0.8778344100716805,0.9155830436479172,0.6654351998602692,0.6322405470883993,False
trainable,headline_full_benchmark,ensemble_proxy_residual_v1,ensemble_proxy_residual_v1,high_confidence,full_benchmark_138k,0.6285699565191688,0.5443186746402892,0.6639929724250621,0.9742179838610154,0.05924103963420163,0.058093534601844854,True
trainable,headline_full_benchmark,proxy_v2_rich_without_contact_field_tuned,proxy_v2_rich_without_contact_high_confidence_c0p01,high_confidence,full_benchmark_138k,0.6215240152822614,0.5333175320610902,0.6597630087847022,0.9705129921792132,0.059216926353710606,0.05812212188100202,True
trainable,headline_full_benchmark,proxy_v2_rich_without_contact,s2t_proxy_v2_without_contact_logistic,high_confidence,full_benchmark_138k,0.6162679158861553,0.5210698418658263,0.6443797758028279,0.9702442881311868,0.059128913215048096,0.05791025747422236,True
trainable,headline_full_benchmark,residual_proxy_v2_rich,molecular_residual_proxy_v2_rich_highconf_c003,high_confidence,full_benchmark_138k,0.6120557792070591,0.529501939907904,0.6499679627962158,0.9724770316515994,0.05919899562147605,0.058093534601844854,True
trainable,headline_full_benchmark,field_leader,logistic_re2g_extended_highconf_c0003,high_confidence,full_benchmark_138k,0.6042468117745026,0.5051871537984534,0.6351647615523219,0.9693702019252134,0.05905335988978929,0.05774176644604177,True
trainable,headline_full_benchmark,residual_proxy_v2_rich_strict,molecular_residual_proxy_v2_rich_strict_broad_c001,high_confidence,full_benchmark_138k,0.6022218018151736,0.5199503589429988,0.6392693012906906,0.971270089200663,0.05917516749489173,0.058093534601844854,True
trainable,headline_full_benchmark,proxy_v2_rich,logistic_counterfactual_proxy_v2_rich_highconf_c0003,high_confidence,full_benchmark_138k,0.5936040775583202,0.5131030829472375,0.635083843077501,0.9704062243240912,0.05921291452378567,0.05812212188100202,True
trainable,headline_full_benchmark,residual_gate,residual_deepset_calibrated_gate_v1,high_confidence,full_benchmark_138k,0.5931337532126284,0.504984271543101,0.6266833340531376,0.970116045835054,0.05913642509326311,0.058093534601844854,True
trainable,headline_full_benchmark,re2g_extended_features,logistic_re2g_extended_features_c0003,high_confidence,full_benchmark_138k,0.5845624311767637,0.49252306415329816,0.6212424530391296,0.96994635665443,0.05912471908100779,0.05794911455321389,True
trainable,headline_full_benchmark,observed_hic_reabc,logistic_observed_hic_reabc_c00003,high_confidence,full_benchmark_138k,0.5750384138539121,0.4817736810770101,0.6082831088422481,0.9712315756494002,0.05921598903422842,0.05812527555438309,True
trainable,headline_full_benchmark,proxy_v2,logistic_counterfactual_proxy_v2_highconf_c0003,high_confidence,full_benchmark_138k,0.5551533491522552,0.46223650976094904,0.5896889629222903,0.968613465703435,0.05892415687136236,0.05747805123411487,True
trainable,headline_full_benchmark,proxy_v1,logistic_counterfactual_proxy_highconf_c0003,high_confidence,full_benchmark_138k,0.4761794346507404,0.4074760857364994,0.5253072458645852,0.9622112509680866,0.05865697275672965,0.057325961212495266,True
trainable,headline_full_benchmark,distance_abc,logistic_distance_abc,high_confidence,full_benchmark_138k,0.3672216929239383,0.30535523868157266,0.4128857964483371,0.9465259385144833,0.05795617283431229,0.05589365347711418,True
no_training_oracle_all_positive,context_only_unmatched_oracle_panel,alphagenome_counterfactual,mask_abs_delta_atac_target_promoter_sum,strict_all,oracle_panel_all_positive,0.5952009870511883,0.5533808406960107,0.6235176099600921,0.8268018489318326,0.7763985754680591,0.6852051781647578,False
no_training_oracle_top250,context_only_unmatched_oracle_panel,alphagenome_counterfactual,mask_abs_delta_atac_target_promoter_sum,strict_all,oracle_panel_top250,0.6437627185719547,0.5916561300599578,0.6878303158775881,0.8154959313498429,0.81549161667223,0.7365891463317389,False
trainable,headline_full_benchmark,ensemble_proxy_residual_v1,ensemble_proxy_residual_v1,strict_all,full_benchmark_138k,0.2965073656661311,0.25426180720800895,0.32320300359244836,0.8816363155144001,0.08855605396354801,0.08063626016073805,True
trainable,headline_full_benchmark,residual_proxy_v2_rich_strict,molecular_residual_proxy_v2_rich_strict_broad_c001,strict_all,full_benchmark_138k,0.2899971297190417,0.24163813471723475,0.31716924269752433,0.8831318622990239,0.08864801806632205,0.08048853595069683,True
trainable,headline_full_benchmark,residual_proxy_v2_rich,molecular_residual_proxy_v2_rich_highconf_c003,strict_all,full_benchmark_138k,0.2878522044410865,0.2425686293599788,0.3165371812947211,0.8789930323484313,0.08858078264035256,0.08089771578980977,True
trainable,headline_full_benchmark,residual_gate,residual_deepset_calibrated_gate_v1,strict_all,full_benchmark_138k,0.2849047054756116,0.24300524322546424,0.3101164492803286,0.881675097339431,0.08865579863442248,0.08031964417803156,True
trainable,headline_full_benchmark,proxy_v2_rich_without_contact,s2t_proxy_v2_without_contact_logistic,strict_all,full_benchmark_138k,0.2816692615193929,0.23663992089309652,0.30883195178792266,0.8660189727556729,0.08788807588698724,0.07994759976710113,True
trainable,headline_full_benchmark,re2g_extended_features,logistic_re2g_extended_features_c0003,strict_all,full_benchmark_138k,0.2784319492981832,0.23662966188120646,0.3047320877627248,0.8776116899780593,0.08835120216801585,0.08038199930776144,True
trainable,headline_full_benchmark,observed_hic_reabc,logistic_observed_hic_reabc_c00003,strict_all,full_benchmark_138k,0.27841593497809664,0.23383882460241331,0.3000065796660237,0.8830283786286255,0.08847696761324499,0.0806079098884831,True
trainable,headline_full_benchmark,proxy_v2_rich_without_contact_field_tuned,proxy_v2_rich_without_contact_high_confidence_c0p01,strict_all,full_benchmark_138k,0.27336900235296596,0.23386429312600923,0.3019499027113647,0.8649219610058214,0.08687287266541772,0.0783277104973034,True
trainable,headline_full_benchmark,field_leader,logistic_re2g_extended_highconf_c0003,strict_all,full_benchmark_138k,0.2729780005678151,0.23056826066643787,0.2975024080584426,0.8672048884583582,0.08776571659286343,0.07994494629437562,True
trainable,headline_full_benchmark,proxy_v2,logistic_counterfactual_proxy_v2_highconf_c0003,strict_all,full_benchmark_138k,0.260123048446885,0.21802741497444805,0.2823924779475045,0.8647251567930138,0.0884133409158561,0.08083048838472365,True
trainable,headline_full_benchmark,proxy_v2_rich,logistic_counterfactual_proxy_v2_rich_highconf_c0003,strict_all,full_benchmark_138k,0.2594424272359668,0.22477104350027985,0.29093608928736925,0.868152882265122,0.08727598876471584,0.07904968507019547,True
trainable,headline_full_benchmark,proxy_v1,logistic_counterfactual_proxy_highconf_c0003,strict_all,full_benchmark_138k,0.2255909752474253,0.19242708675931539,0.25213821344081244,0.8600893761861833,0.08747165502132924,0.07955324222717251,True
trainable,headline_full_benchmark,distance_abc,logistic_distance_abc,strict_all,full_benchmark_138k,0.18420892943957679,0.1527315521253184,0.20236306638294238,0.8511244853638195,0.08664400052973287,0.07806476917170804,True
no_training_oracle_all_positive,context_only_unmatched_oracle_panel,alphagenome_counterfactual,mask_abs_delta_atac_target_promoter_sum,very_high_confidence,oracle_panel_all_positive,0.8395527956358446,0.7555370367119852,0.8740948820135902,0.9296035167986734,0.2015667951432664,0.194706879316726,False
no_training_oracle_top250,context_only_unmatched_oracle_panel,alphagenome_counterfactual,mask_abs_delta_atac_target_promoter_sum,very_high_confidence,oracle_panel_top250,0.888089556441054,0.8170730204616092,0.915278679215409,0.9222284816451484,0.4668899950223991,0.4510104529616724,False
trainable,headline_full_benchmark,proxy_v2_rich_without_contact_field_tuned,proxy_v2_rich_without_contact_high_confidence_c0p01,very_high_confidence,full_benchmark_138k,0.7135841610301003,0.5814084298173322,0.7727328226614099,0.9841908200597647,0.02561600129700641,0.02522698520500797,True
trainable,headline_full_benchmark,ensemble_proxy_residual_v1,ensemble_proxy_residual_v1,very_high_confidence,full_benchmark_138k,0.7117060831740245,0.5867176899564607,0.769497143862186,0.980284216342635,0.02545071204080806,0.02489640669261127,True
trainable,headline_full_benchmark,proxy_v2_rich,logistic_counterfactual_proxy_v2_rich_highconf_c0003,very_high_confidence,full_benchmark_138k,0.698381192629186,0.5645163425111517,0.7624694272681026,0.9831141699998494,0.025750772186494277,0.02549652698398371,True
trainable,headline_full_benchmark,proxy_v2_rich_without_contact,s2t_proxy_v2_without_contact_logistic,very_high_confidence,full_benchmark_138k,0.6923976594520254,0.5507740763433626,0.7463993823102365,0.984433941904784,0.02561600129700641,0.02522698520500797,True
trainable,headline_full_benchmark,residual_proxy_v2_rich,molecular_residual_proxy_v2_rich_highconf_c003,very_high_confidence,full_benchmark_138k,0.6750868574212904,0.5392351441132546,0.7317081411214437,0.9804056293693748,0.025585482930295927,0.025165948471587013,True
trainable,headline_full_benchmark,residual_proxy_v2_rich_strict,molecular_residual_proxy_v2_rich_strict_broad_c001,very_high_confidence,full_benchmark_138k,0.6741358142239404,0.5415684039270476,0.7375625751653897,0.9772808052798323,0.02545071204080806,0.024896406692611273,True
trainable,headline_full_benchmark,field_leader,logistic_re2g_extended_highconf_c0003,very_high_confidence,full_benchmark_138k,0.6707839743669473,0.5406341335062341,0.7307148361383462,0.9815714137565786,0.025585482930295927,0.025165948471587013,True
trainable,headline_full_benchmark,residual_gate,residual_deepset_calibrated_gate_v1,very_high_confidence,full_benchmark_138k,0.6613936115750342,0.5348445541592309,0.7251411060608164,0.9776165398059611,0.025585482930295927,0.025165948471587013,True
trainable,headline_full_benchmark,observed_hic_reabc,logistic_observed_hic_reabc_c00003,very_high_confidence,full_benchmark_138k,0.6439843544190871,0.5037285450264865,0.7073745665647351,0.9723534555897604,0.02545071204080806,0.02489640669261127,True
trainable,headline_full_benchmark,re2g_extended_features,logistic_re2g_extended_features_c0003,very_high_confidence,full_benchmark_138k,0.6179272236754259,0.5027520771704822,0.7054581667031002,0.9726607962135277,0.02540578841097877,0.02489640669261127,True
trainable,headline_full_benchmark,proxy_v2,logistic_counterfactual_proxy_v2_highconf_c0003,very_high_confidence,full_benchmark_138k,0.6095981130023923,0.468675745500304,0.6710044354977951,0.9815650763800221,0.02561600129700641,0.02522698520500797,True
trainable,headline_full_benchmark,proxy_v1,logistic_counterfactual_proxy_highconf_c0003,very_high_confidence,full_benchmark_138k,0.5192198139410688,0.3782084115187274,0.5886511607598229,0.9774004327405036,0.02561600129700641,0.02522698520500797,True
trainable,headline_full_benchmark,distance_abc,logistic_distance_abc,very_high_confidence,full_benchmark_138k,0.37227183516978857,0.27165535559764553,0.4553121567792214,0.9607209780364657,0.02524049915478042,0.024565828180214577,True