diff --git a/results/README.md b/results/README.md new file mode 100644 index 0000000000000000000000000000000000000000..693eab7053b995881aaff5cd632a69d9f9221be0 --- /dev/null +++ b/results/README.md @@ -0,0 +1,3 @@ +# Results + +Generated result tables belong here. Commit only small summary files that are allowed to be shared. diff --git a/results/paper/paper_headline_comparison.csv b/results/paper/paper_headline_comparison.csv new file mode 100644 index 0000000000000000000000000000000000000000..6d85ac61b2490ead7f0f4a714c7d6324e5d75c9b --- /dev/null +++ b/results/paper/paper_headline_comparison.csv @@ -0,0 +1,53 @@ +result_type,comparison_scope,source_name,model_or_feature,scoreboard,evaluation_universe,auprc,ci_low,ci_high,auroc,mrr,recall_at_1,terms_ok_for_training +trainable,headline_full_benchmark,ensemble_proxy_residual_v1,ensemble_proxy_residual_v1,field_compatible_e2g,full_benchmark_138k,0.6515090087624756,0.5661086678015007,0.6865697996597102,0.9790334890567702,0.061211256965711225,0.06028474530388215,True +trainable,headline_full_benchmark,proxy_v2_rich_without_contact_field_tuned,proxy_v2_rich_without_contact_high_confidence_c0p01,field_compatible_e2g,full_benchmark_138k,0.6440052022657523,0.5547089564598817,0.6778361149718646,0.9750048596318548,0.06126253766453136,0.06055652110855766,True +trainable,headline_full_benchmark,proxy_v2_rich_without_contact,s2t_proxy_v2_without_contact_logistic,field_compatible_e2g,full_benchmark_138k,0.6379026011587243,0.5413702324732519,0.6664126618705554,0.9740552906401134,0.061167115599548086,0.06032768815661258,True +trainable,headline_full_benchmark,residual_proxy_v2_rich,molecular_residual_proxy_v2_rich_highconf_c003,field_compatible_e2g,full_benchmark_138k,0.6348907689473677,0.5590306631395894,0.6735981489515749,0.9767774922966519,0.06128058340183208,0.060513578255827226,True +trainable,headline_full_benchmark,field_leader,logistic_re2g_extended_highconf_c0003,field_compatible_e2g,full_benchmark_138k,0.628631319885814,0.5341459432465462,0.6553127006429378,0.9747429941038794,0.061225858252781,0.06033969934169876,True +trainable,headline_full_benchmark,residual_proxy_v2_rich_strict,molecular_residual_proxy_v2_rich_strict_broad_c001,field_compatible_e2g,full_benchmark_138k,0.6250163457987695,0.5469792941441491,0.6608264652715575,0.9760762471995207,0.06113827793511042,0.06028474530388215,True +trainable,headline_full_benchmark,residual_gate,residual_deepset_calibrated_gate_v1,field_compatible_e2g,full_benchmark_138k,0.6163264227871341,0.5266313119425095,0.6480876265690304,0.9746730330657309,0.061096759203177864,0.06028474530388215,True +trainable,headline_full_benchmark,proxy_v2_rich,logistic_counterfactual_proxy_v2_rich_highconf_c0003,field_compatible_e2g,full_benchmark_138k,0.6125041124174517,0.5290633063662551,0.6570206865275952,0.974317912199877,0.06118158839070072,0.06032768815661258,True +trainable,headline_full_benchmark,re2g_extended_features,logistic_re2g_extended_features_c0003,field_compatible_e2g,full_benchmark_138k,0.6083688535275066,0.5183509207116546,0.643067913068694,0.9761022410542315,0.061183753980867714,0.060324786228062,True +trainable,headline_full_benchmark,observed_hic_reabc,logistic_observed_hic_reabc_c00003,field_compatible_e2g,full_benchmark_138k,0.5951369515447468,0.5036320389701967,0.6293582473881493,0.976756996496561,0.061253185675807356,0.060548249915212835,True +trainable,headline_full_benchmark,proxy_v2,logistic_counterfactual_proxy_v2_highconf_c0003,field_compatible_e2g,full_benchmark_138k,0.5729880607329099,0.48144355328167326,0.6017969796559713,0.9714553934868022,0.06093903186539137,0.05984736177842298,True +trainable,headline_full_benchmark,proxy_v1,logistic_counterfactual_proxy_highconf_c0003,field_compatible_e2g,full_benchmark_138k,0.4898409463733236,0.42015021101416294,0.53985336818666,0.9635828110276844,0.06041709886111727,0.05921454430490667,True +trainable,headline_full_benchmark,distance_abc,logistic_distance_abc,field_compatible_e2g,full_benchmark_138k,0.3860212863390343,0.3147494869304455,0.4281753434726135,0.9500934309466634,0.05979169341173638,0.05784863437145854,True +trainable,headline_full_benchmark,ensemble_proxy_residual_v1,ensemble_proxy_residual_v1,high_confidence,full_benchmark_138k,0.6285699565191688,0.5443186746402892,0.6639929724250621,0.9742179838610154,0.05924103963420163,0.058093534601844854,True +trainable,headline_full_benchmark,proxy_v2_rich_without_contact_field_tuned,proxy_v2_rich_without_contact_high_confidence_c0p01,high_confidence,full_benchmark_138k,0.6215240152822614,0.5333175320610902,0.6597630087847022,0.9705129921792132,0.059216926353710606,0.05812212188100202,True +trainable,headline_full_benchmark,proxy_v2_rich_without_contact,s2t_proxy_v2_without_contact_logistic,high_confidence,full_benchmark_138k,0.6162679158861553,0.5210698418658263,0.6443797758028279,0.9702442881311868,0.059128913215048096,0.05791025747422236,True +trainable,headline_full_benchmark,residual_proxy_v2_rich,molecular_residual_proxy_v2_rich_highconf_c003,high_confidence,full_benchmark_138k,0.6120557792070591,0.529501939907904,0.6499679627962158,0.9724770316515994,0.05919899562147605,0.058093534601844854,True +trainable,headline_full_benchmark,field_leader,logistic_re2g_extended_highconf_c0003,high_confidence,full_benchmark_138k,0.6042468117745026,0.5051871537984534,0.6351647615523219,0.9693702019252134,0.05905335988978929,0.05774176644604177,True +trainable,headline_full_benchmark,residual_proxy_v2_rich_strict,molecular_residual_proxy_v2_rich_strict_broad_c001,high_confidence,full_benchmark_138k,0.6022218018151736,0.5199503589429988,0.6392693012906906,0.971270089200663,0.05917516749489173,0.058093534601844854,True +trainable,headline_full_benchmark,proxy_v2_rich,logistic_counterfactual_proxy_v2_rich_highconf_c0003,high_confidence,full_benchmark_138k,0.5936040775583202,0.5131030829472375,0.635083843077501,0.9704062243240912,0.05921291452378567,0.05812212188100202,True +trainable,headline_full_benchmark,residual_gate,residual_deepset_calibrated_gate_v1,high_confidence,full_benchmark_138k,0.5931337532126284,0.504984271543101,0.6266833340531376,0.970116045835054,0.05913642509326311,0.058093534601844854,True +trainable,headline_full_benchmark,re2g_extended_features,logistic_re2g_extended_features_c0003,high_confidence,full_benchmark_138k,0.5845624311767637,0.49252306415329816,0.6212424530391296,0.96994635665443,0.05912471908100779,0.05794911455321389,True +trainable,headline_full_benchmark,observed_hic_reabc,logistic_observed_hic_reabc_c00003,high_confidence,full_benchmark_138k,0.5750384138539121,0.4817736810770101,0.6082831088422481,0.9712315756494002,0.05921598903422842,0.05812527555438309,True +trainable,headline_full_benchmark,proxy_v2,logistic_counterfactual_proxy_v2_highconf_c0003,high_confidence,full_benchmark_138k,0.5551533491522552,0.46223650976094904,0.5896889629222903,0.968613465703435,0.05892415687136236,0.05747805123411487,True +trainable,headline_full_benchmark,proxy_v1,logistic_counterfactual_proxy_highconf_c0003,high_confidence,full_benchmark_138k,0.4761794346507404,0.4074760857364994,0.5253072458645852,0.9622112509680866,0.05865697275672965,0.057325961212495266,True +trainable,headline_full_benchmark,distance_abc,logistic_distance_abc,high_confidence,full_benchmark_138k,0.3672216929239383,0.30535523868157266,0.4128857964483371,0.9465259385144833,0.05795617283431229,0.05589365347711418,True +trainable,headline_full_benchmark,ensemble_proxy_residual_v1,ensemble_proxy_residual_v1,strict_all,full_benchmark_138k,0.2965073656661311,0.25426180720800895,0.32320300359244836,0.8816363155144001,0.08855605396354801,0.08063626016073805,True +trainable,headline_full_benchmark,residual_proxy_v2_rich_strict,molecular_residual_proxy_v2_rich_strict_broad_c001,strict_all,full_benchmark_138k,0.2899971297190417,0.24163813471723475,0.31716924269752433,0.8831318622990239,0.08864801806632205,0.08048853595069683,True +trainable,headline_full_benchmark,residual_proxy_v2_rich,molecular_residual_proxy_v2_rich_highconf_c003,strict_all,full_benchmark_138k,0.2878522044410865,0.2425686293599788,0.3165371812947211,0.8789930323484313,0.08858078264035256,0.08089771578980977,True +trainable,headline_full_benchmark,residual_gate,residual_deepset_calibrated_gate_v1,strict_all,full_benchmark_138k,0.2849047054756116,0.24300524322546424,0.3101164492803286,0.881675097339431,0.08865579863442248,0.08031964417803156,True +trainable,headline_full_benchmark,proxy_v2_rich_without_contact,s2t_proxy_v2_without_contact_logistic,strict_all,full_benchmark_138k,0.2816692615193929,0.23663992089309652,0.30883195178792266,0.8660189727556729,0.08788807588698724,0.07994759976710113,True +trainable,headline_full_benchmark,re2g_extended_features,logistic_re2g_extended_features_c0003,strict_all,full_benchmark_138k,0.2784319492981832,0.23662966188120646,0.3047320877627248,0.8776116899780593,0.08835120216801585,0.08038199930776144,True +trainable,headline_full_benchmark,observed_hic_reabc,logistic_observed_hic_reabc_c00003,strict_all,full_benchmark_138k,0.27841593497809664,0.23383882460241331,0.3000065796660237,0.8830283786286255,0.08847696761324499,0.0806079098884831,True +trainable,headline_full_benchmark,proxy_v2_rich_without_contact_field_tuned,proxy_v2_rich_without_contact_high_confidence_c0p01,strict_all,full_benchmark_138k,0.27336900235296596,0.23386429312600923,0.3019499027113647,0.8649219610058214,0.08687287266541772,0.0783277104973034,True +trainable,headline_full_benchmark,field_leader,logistic_re2g_extended_highconf_c0003,strict_all,full_benchmark_138k,0.2729780005678151,0.23056826066643787,0.2975024080584426,0.8672048884583582,0.08776571659286343,0.07994494629437562,True +trainable,headline_full_benchmark,proxy_v2,logistic_counterfactual_proxy_v2_highconf_c0003,strict_all,full_benchmark_138k,0.260123048446885,0.21802741497444805,0.2823924779475045,0.8647251567930138,0.0884133409158561,0.08083048838472365,True +trainable,headline_full_benchmark,proxy_v2_rich,logistic_counterfactual_proxy_v2_rich_highconf_c0003,strict_all,full_benchmark_138k,0.2594424272359668,0.22477104350027985,0.29093608928736925,0.868152882265122,0.08727598876471584,0.07904968507019547,True +trainable,headline_full_benchmark,proxy_v1,logistic_counterfactual_proxy_highconf_c0003,strict_all,full_benchmark_138k,0.2255909752474253,0.19242708675931539,0.25213821344081244,0.8600893761861833,0.08747165502132924,0.07955324222717251,True +trainable,headline_full_benchmark,distance_abc,logistic_distance_abc,strict_all,full_benchmark_138k,0.18420892943957679,0.1527315521253184,0.20236306638294238,0.8511244853638195,0.08664400052973287,0.07806476917170804,True +trainable,headline_full_benchmark,proxy_v2_rich_without_contact_field_tuned,proxy_v2_rich_without_contact_high_confidence_c0p01,very_high_confidence,full_benchmark_138k,0.7135841610301003,0.5814084298173322,0.7727328226614099,0.9841908200597647,0.02561600129700641,0.02522698520500797,True +trainable,headline_full_benchmark,ensemble_proxy_residual_v1,ensemble_proxy_residual_v1,very_high_confidence,full_benchmark_138k,0.7117060831740245,0.5867176899564607,0.769497143862186,0.980284216342635,0.02545071204080806,0.02489640669261127,True +trainable,headline_full_benchmark,proxy_v2_rich,logistic_counterfactual_proxy_v2_rich_highconf_c0003,very_high_confidence,full_benchmark_138k,0.698381192629186,0.5645163425111517,0.7624694272681026,0.9831141699998494,0.025750772186494277,0.02549652698398371,True +trainable,headline_full_benchmark,proxy_v2_rich_without_contact,s2t_proxy_v2_without_contact_logistic,very_high_confidence,full_benchmark_138k,0.6923976594520254,0.5507740763433626,0.7463993823102365,0.984433941904784,0.02561600129700641,0.02522698520500797,True +trainable,headline_full_benchmark,residual_proxy_v2_rich,molecular_residual_proxy_v2_rich_highconf_c003,very_high_confidence,full_benchmark_138k,0.6750868574212904,0.5392351441132546,0.7317081411214437,0.9804056293693748,0.025585482930295927,0.025165948471587013,True +trainable,headline_full_benchmark,residual_proxy_v2_rich_strict,molecular_residual_proxy_v2_rich_strict_broad_c001,very_high_confidence,full_benchmark_138k,0.6741358142239404,0.5415684039270476,0.7375625751653897,0.9772808052798323,0.02545071204080806,0.024896406692611273,True +trainable,headline_full_benchmark,field_leader,logistic_re2g_extended_highconf_c0003,very_high_confidence,full_benchmark_138k,0.6707839743669473,0.5406341335062341,0.7307148361383462,0.9815714137565786,0.025585482930295927,0.025165948471587013,True +trainable,headline_full_benchmark,residual_gate,residual_deepset_calibrated_gate_v1,very_high_confidence,full_benchmark_138k,0.6613936115750342,0.5348445541592309,0.7251411060608164,0.9776165398059611,0.025585482930295927,0.025165948471587013,True +trainable,headline_full_benchmark,observed_hic_reabc,logistic_observed_hic_reabc_c00003,very_high_confidence,full_benchmark_138k,0.6439843544190871,0.5037285450264865,0.7073745665647351,0.9723534555897604,0.02545071204080806,0.02489640669261127,True +trainable,headline_full_benchmark,re2g_extended_features,logistic_re2g_extended_features_c0003,very_high_confidence,full_benchmark_138k,0.6179272236754259,0.5027520771704822,0.7054581667031002,0.9726607962135277,0.02540578841097877,0.02489640669261127,True +trainable,headline_full_benchmark,proxy_v2,logistic_counterfactual_proxy_v2_highconf_c0003,very_high_confidence,full_benchmark_138k,0.6095981130023923,0.468675745500304,0.6710044354977951,0.9815650763800221,0.02561600129700641,0.02522698520500797,True +trainable,headline_full_benchmark,proxy_v1,logistic_counterfactual_proxy_highconf_c0003,very_high_confidence,full_benchmark_138k,0.5192198139410688,0.3782084115187274,0.5886511607598229,0.9774004327405036,0.02561600129700641,0.02522698520500797,True +trainable,headline_full_benchmark,distance_abc,logistic_distance_abc,very_high_confidence,full_benchmark_138k,0.37227183516978857,0.27165535559764553,0.4553121567792214,0.9607209780364657,0.02524049915478042,0.024565828180214577,True diff --git a/results/paper/paper_honest_leaderboard.csv b/results/paper/paper_honest_leaderboard.csv new file mode 100644 index 0000000000000000000000000000000000000000..a0ce73a6a4458deb43e613816d966083bc348dec --- /dev/null +++ b/results/paper/paper_honest_leaderboard.csv @@ -0,0 +1,25 @@ +model,scoreboard,n_pairs,prevalence,auprc,auprc_ci_low,auprc_ci_high,auroc,precision_at_1,precision_at_5,precision_at_10,ece +ensemble_proxy_residual_v1,field_compatible_e2g,16778,0.01734414113720348,0.6265504415205705,0.5661086678015007,0.6865697996597102,0.9798124816449157,0.0,0.4,0.7,0.18599818760260964 +residual_gate,field_compatible_e2g,16778,0.01734414113720348,0.5896082695122017,0.5266313119425095,0.6480876265690304,0.9752542719797771,0.0,0.4,0.7,0.2170660169221907 +re2g_extended,field_compatible_e2g,16778,0.01734414113720348,0.5820413833939936,0.5183509207116546,0.643067913068694,0.9770165685053954,0.0,0.4,0.7,0.23985583338885658 +observed_hic_reabc,field_compatible_e2g,16778,0.01734414113720348,0.5642902879296154,0.5036320389701967,0.6293582473881493,0.9777581712301914,0.0,0.8,0.6,0.3237553037798111 +pu_set_molecular,field_compatible_e2g,16778,0.01734414113720348,0.4660966525412397,0.4074759744029788,0.5279484909992259,0.954989633611153,1.0,0.8,0.7,0.032724958450298526 +distance_abc,field_compatible_e2g,16778,0.01734414113720348,0.37039229043836713,0.3147494869304455,0.4281753434726135,0.949403018143838,1.0,0.6,0.6,0.27983686804061403 +ensemble_proxy_residual_v1,high_confidence,19125,0.016104575163398693,0.603666938917732,0.5443186746402892,0.6639929724250621,0.9751421586862943,0.0,0.4,0.7,0.1866970869130563 +residual_gate,high_confidence,19125,0.016104575163398693,0.5667079426470731,0.504984271543101,0.6266833340531376,0.9710473535605065,0.0,0.4,0.7,0.2164954430040057 +re2g_extended,high_confidence,19125,0.016104575163398693,0.5585834788381682,0.49252306415329816,0.6212424530391296,0.9709641875369674,0.0,0.4,0.7,0.2385698980451706 +observed_hic_reabc,high_confidence,19125,0.016104575163398693,0.5430028086204335,0.4817736810770101,0.6082831088422481,0.9720292992865667,0.0,0.8,0.6,0.3211946351322472 +pu_set_molecular,high_confidence,19125,0.016104575163398693,0.44062860229484063,0.38145548112629496,0.505602828392446,0.9458256177579131,1.0,0.8,0.7,0.031236828342194354 +distance_abc,high_confidence,19125,0.016104575163398693,0.35276803179911037,0.30535523868157266,0.4128857964483371,0.9461468939733275,1.0,0.6,0.6,0.2759927425520765 +ensemble_proxy_residual_v1,strict_all,40322,0.01646743713109469,0.28541434447356184,0.25426180720800895,0.32320300359244836,0.8784134090449245,0.0,0.2,0.2,0.20924380845199195 +residual_gate,strict_all,40322,0.01646743713109469,0.27376080784558515,0.24300524322546424,0.3101164492803286,0.8771317049933558,0.0,0.2,0.2,0.2344833107926746 +re2g_extended,strict_all,40322,0.01646743713109469,0.2680607130432016,0.23662966188120646,0.3047320877627248,0.876715951505857,0.0,0.2,0.2,0.2546669669583063 +observed_hic_reabc,strict_all,40322,0.01646743713109469,0.26421781938643807,0.23383882460241331,0.3000065796660237,0.8819387692481561,0.0,0.4,0.3,0.334479452456502 +pu_set_molecular,strict_all,40322,0.01646743713109469,0.19380567166630233,0.16830783003999583,0.22158523052203183,0.8440392388050361,1.0,0.6,0.3,0.04051529242425221 +distance_abc,strict_all,40322,0.01646743713109469,0.1764834850369487,0.1527315521253184,0.20236306638294238,0.849680354379341,0.0,0.2,0.3,0.2860391426244499 +ensemble_proxy_residual_v1,very_high_confidence,9382,0.010658708164570454,0.6748544026355536,0.5867176899564607,0.769497143862186,0.9799019607843137,1.0,0.8,0.9,0.18100388253759275 +residual_gate,very_high_confidence,9382,0.010658708164570454,0.6287080036492164,0.5348445541592309,0.7251411060608164,0.9778560655031243,1.0,0.8,0.9,0.21194154299833165 +observed_hic_reabc,very_high_confidence,9382,0.010658708164570454,0.6081537253745161,0.5037285450264865,0.7073745665647351,0.9714145658263306,1.0,0.8,0.8,0.3177538696056864 +re2g_extended,very_high_confidence,9382,0.010658708164570454,0.602411378611713,0.5027520771704822,0.7054581667031002,0.9721374703727645,1.0,0.8,0.9,0.23398945047758724 +pu_set_molecular,very_high_confidence,9382,0.010658708164570454,0.4446283896891536,0.35124333544605846,0.5500690957247943,0.9424509803921569,1.0,0.6,0.6,0.030912725218740077 +distance_abc,very_high_confidence,9382,0.010658708164570454,0.36159557579186247,0.27165535559764553,0.4553121567792214,0.9598448610213316,1.0,0.8,0.7,0.2726845293267481 diff --git a/results/paper/paper_incremental_value.csv b/results/paper/paper_incremental_value.csv new file mode 100644 index 0000000000000000000000000000000000000000..cbf23def01f63d95bf47a492a5fc433bce5c4022 --- /dev/null +++ b/results/paper/paper_incremental_value.csv @@ -0,0 +1,17 @@ +scoreboard,n_pairs,n_regions,n_positive,auprc_trained,auprc_feature,auprc_blend,diff_blend_minus_trained,ci_low,ci_high,p_value,spearman_feature_vs_model,adds_value,panel,feature_source,feature,trained_model +strict_all,2302,250,314,0.7278059629772614,0.6368191161663307,0.7106956260935192,-0.017110336883742194,-0.03743153685830222,0.0024705502352204336,0.096,0.5221667526357769,False,top250,alphagenome_counterfactual,mask_abs_delta_atac_target_promoter_sum,observed_hic_reabc +high_confidence,1070,246,187,0.9159344411410546,0.8412454934994064,0.9014756651556063,-0.014458775985448313,-0.034535454328784694,0.003486704920771514,0.116,0.5660733310573297,False,top250,alphagenome_counterfactual,mask_abs_delta_atac_target_promoter_sum,observed_hic_reabc +field_compatible_e2g,1013,238,173,0.9379877563241552,0.8704229890276831,0.926601319527621,-0.011386436796534172,-0.031248051461424925,0.00758949951475986,0.226,0.57071609548771,False,top250,alphagenome_counterfactual,mask_abs_delta_atac_target_promoter_sum,observed_hic_reabc +very_high_confidence,530,202,100,0.926445896958734,0.8674273097482873,0.913834255053339,-0.012611641905394988,-0.037404375381710014,0.010862913633968055,0.322,0.6094274132104288,False,top250,alphagenome_counterfactual,mask_abs_delta_atac_target_promoter_sum,observed_hic_reabc +strict_all,2302,250,314,0.7313741560765576,0.6368191161663307,0.7161694360363368,-0.015204720040220887,-0.0369096326926239,0.005456786299849686,0.16,0.4557418084980739,False,top250,alphagenome_counterfactual,mask_abs_delta_atac_target_promoter_sum,ensemble_proxy_residual_v1 +high_confidence,1070,246,187,0.9216300724915244,0.8412454934994064,0.9068883931347497,-0.014741679356774728,-0.03530003197218741,0.00373432828811122,0.112,0.5150928066600954,False,top250,alphagenome_counterfactual,mask_abs_delta_atac_target_promoter_sum,ensemble_proxy_residual_v1 +field_compatible_e2g,1013,238,173,0.93960357272051,0.8704229890276831,0.9300598229632645,-0.009543749757245479,-0.029641680035725777,0.00955047587576589,0.298,0.5325836972919877,False,top250,alphagenome_counterfactual,mask_abs_delta_atac_target_promoter_sum,ensemble_proxy_residual_v1 +very_high_confidence,530,202,100,0.9397947449093143,0.8674273097482873,0.9204147634506502,-0.019379981458664042,-0.04704686369698934,0.007983037069681636,0.168,0.5589612515664832,False,top250,alphagenome_counterfactual,mask_abs_delta_atac_target_promoter_sum,ensemble_proxy_residual_v1 +strict_all,5904,600,664,0.6957774430989128,0.5885357812553353,0.675431682063964,-0.020345761034948784,-0.0402809625346681,0.0010548411212533185,0.072,0.4828402604833807,False,all_positive,alphagenome_counterfactual,mask_abs_delta_atac_target_promoter_sum,observed_hic_reabc +high_confidence,2753,570,308,0.9043991047021523,0.8014010451936466,0.8772088705408179,-0.02719023416133448,-0.04599336911136727,-0.0068451997451959784,0.01,0.4886198157054772,False,all_positive,alphagenome_counterfactual,mask_abs_delta_atac_target_promoter_sum,observed_hic_reabc +field_compatible_e2g,2572,547,291,0.9229028741297031,0.8234656171861537,0.8973268069371252,-0.025576067192577878,-0.043723478743729685,-0.008528865883460657,0.002,0.4930616051069166,False,all_positive,alphagenome_counterfactual,mask_abs_delta_atac_target_promoter_sum,observed_hic_reabc +very_high_confidence,1293,465,100,0.8858484687873412,0.8186234252586512,0.8770373881359265,-0.008811080651414782,-0.041960483167059096,0.020294713702824742,0.592,0.46337526593382183,False,all_positive,alphagenome_counterfactual,mask_abs_delta_atac_target_promoter_sum,observed_hic_reabc +strict_all,5904,600,664,0.6871840786820296,0.5885357812553353,0.6752058987087315,-0.011978179973298086,-0.032509901826056516,0.009010426531613729,0.242,0.40924375031902066,False,all_positive,alphagenome_counterfactual,mask_abs_delta_atac_target_promoter_sum,ensemble_proxy_residual_v1 +high_confidence,2753,570,308,0.9081238560155114,0.8014010451936466,0.8806973134316803,-0.027426542583831037,-0.04585438766264646,-0.008088013412072485,0.008,0.42549486471767745,False,all_positive,alphagenome_counterfactual,mask_abs_delta_atac_target_promoter_sum,ensemble_proxy_residual_v1 +field_compatible_e2g,2572,547,291,0.9226729012130083,0.8234656171861537,0.8994963621145685,-0.023176539098439752,-0.041501197353123756,-0.00591604281058294,0.012,0.4410021981505217,False,all_positive,alphagenome_counterfactual,mask_abs_delta_atac_target_promoter_sum,ensemble_proxy_residual_v1 +very_high_confidence,1293,465,100,0.9071943418966708,0.8186234252586512,0.8869697985877959,-0.02022454330887491,-0.05507095787688393,0.012640084679160566,0.198,0.3888289903373914,False,all_positive,alphagenome_counterfactual,mask_abs_delta_atac_target_promoter_sum,ensemble_proxy_residual_v1 diff --git a/results/paper/paper_incremental_value.md b/results/paper/paper_incremental_value.md new file mode 100644 index 0000000000000000000000000000000000000000..2ec8c92f707bf1c4931892b4288785066348a22b --- /dev/null +++ b/results/paper/paper_incremental_value.md @@ -0,0 +1,25 @@ +# Incremental Value Of Sequence Counterfactual Features + +Does adding the sequence counterfactual feature improve AUPRC over the +strongest trained molecular model, on identical matched rows? `adds_value` +is True only when the paired region-bootstrap 95% CI of (blend - trained) +is entirely above zero. + +| panel | trained_model | scoreboard | auprc_trained | auprc_feature | auprc_blend | diff | ci_low | ci_high | adds_value | +| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | +| top250 | observed_hic_reabc | strict_all | 0.7278 | 0.6368 | 0.7107 | -0.0171 | -0.0374 | +0.0025 | False | +| top250 | observed_hic_reabc | high_confidence | 0.9159 | 0.8412 | 0.9015 | -0.0145 | -0.0345 | +0.0035 | False | +| top250 | observed_hic_reabc | field_compatible_e2g | 0.9380 | 0.8704 | 0.9266 | -0.0114 | -0.0312 | +0.0076 | False | +| top250 | observed_hic_reabc | very_high_confidence | 0.9264 | 0.8674 | 0.9138 | -0.0126 | -0.0374 | +0.0109 | False | +| top250 | ensemble_proxy_residual_v1 | strict_all | 0.7314 | 0.6368 | 0.7162 | -0.0152 | -0.0369 | +0.0055 | False | +| top250 | ensemble_proxy_residual_v1 | high_confidence | 0.9216 | 0.8412 | 0.9069 | -0.0147 | -0.0353 | +0.0037 | False | +| top250 | ensemble_proxy_residual_v1 | field_compatible_e2g | 0.9396 | 0.8704 | 0.9301 | -0.0095 | -0.0296 | +0.0096 | False | +| top250 | ensemble_proxy_residual_v1 | very_high_confidence | 0.9398 | 0.8674 | 0.9204 | -0.0194 | -0.0470 | +0.0080 | False | +| all_positive | observed_hic_reabc | strict_all | 0.6958 | 0.5885 | 0.6754 | -0.0203 | -0.0403 | +0.0011 | False | +| all_positive | observed_hic_reabc | high_confidence | 0.9044 | 0.8014 | 0.8772 | -0.0272 | -0.0460 | -0.0068 | False | +| all_positive | observed_hic_reabc | field_compatible_e2g | 0.9229 | 0.8235 | 0.8973 | -0.0256 | -0.0437 | -0.0085 | False | +| all_positive | observed_hic_reabc | very_high_confidence | 0.8858 | 0.8186 | 0.8770 | -0.0088 | -0.0420 | +0.0203 | False | +| all_positive | ensemble_proxy_residual_v1 | strict_all | 0.6872 | 0.5885 | 0.6752 | -0.0120 | -0.0325 | +0.0090 | False | +| all_positive | ensemble_proxy_residual_v1 | high_confidence | 0.9081 | 0.8014 | 0.8807 | -0.0274 | -0.0459 | -0.0081 | False | +| all_positive | ensemble_proxy_residual_v1 | field_compatible_e2g | 0.9227 | 0.8235 | 0.8995 | -0.0232 | -0.0415 | -0.0059 | False | +| all_positive | ensemble_proxy_residual_v1 | very_high_confidence | 0.9072 | 0.8186 | 0.8870 | -0.0202 | -0.0551 | +0.0126 | False | \ No newline at end of file diff --git a/results/paper/paper_matched_panel_comparison.csv b/results/paper/paper_matched_panel_comparison.csv new file mode 100644 index 0000000000000000000000000000000000000000..13adcd66881e35976741097c544b34aab63f76ef --- /dev/null +++ b/results/paper/paper_matched_panel_comparison.csv @@ -0,0 +1,129 @@ +source_name,model_name,scoreboard,auprc,auprc_lift,auroc,mrr,prevalence,recall_at_1,target_auprc,target_met,panel,evaluation_universe,result_type,ci_low,ci_high +ensemble_proxy_residual_v1,ensemble_proxy_residual_v1,field_compatible_e2g,0.9272801388193148,8.259668744960935,0.9799368544297427,0.4971975611721932,0.1145887626391715,0.48955050648408116,0.62,True,all_positive,oracle_panel_all_positive,trainable,0.8981861078196884,0.9461082514031017 +observed_hic_reabc,logistic_observed_hic_reabc_c00003,field_compatible_e2g,0.9262040277671104,8.262699282725492,0.9784975905977626,0.49732608293301583,0.1145887626391715,0.4913853688694023,0.62,True,all_positive,oracle_panel_all_positive,trainable,0.8987787576073473,0.9465537012420938 +residual_gate,residual_deepset_calibrated_gate_v1,field_compatible_e2g,0.9237386208218815,8.231088713818549,0.9787707037676684,0.496211418705444,0.1145887626391715,0.48955050648408116,0.62,True,all_positive,oracle_panel_all_positive,trainable,0.8925164187102305,0.9440505496040128 +proxy_v2_rich,logistic_counterfactual_proxy_v2_rich_highconf_c0003,field_compatible_e2g,0.9127358594986633,8.126012620202939,0.9728403745424062,0.4968969682650182,0.1145887626391715,0.4898229465892287,0.62,True,all_positive,oracle_panel_all_positive,trainable,0.8816092188780157,0.9363517825542392 +field_leader,logistic_re2g_extended_highconf_c0003,field_compatible_e2g,0.9123703683207086,8.136721616633112,0.9729334272986275,0.4971834431922416,0.1145887626391715,0.4896612309383678,0.62,True,all_positive,oracle_panel_all_positive,trainable,0.8789483390065835,0.9348369262400509 +re2g_extended_features,logistic_re2g_extended_features_c0003,field_compatible_e2g,0.9081004379661707,8.091483920186606,0.9756335237397424,0.4967326080671275,0.1145887626391715,0.4895671870512205,0.62,True,all_positive,oracle_panel_all_positive,trainable,0.8757136802476418,0.9306389285365009 +distance_abc,logistic_distance_abc,field_compatible_e2g,0.8469465255813311,7.566347639491527,0.9589988169079602,0.4855721552959393,0.1145887626391715,0.46967032139314374,0.62,True,all_positive,oracle_panel_all_positive,trainable,0.7948331872083162,0.8857678280188092 +alphagenome_counterfactual,mask_abs_delta_atac_target_promoter_sum,field_compatible_e2g,0.828159620239983,7.356944222521371,0.935803328619861,0.4788968376214441,0.1145887626391715,0.4608166401256694,0.62,True,all_positive,oracle_panel_all_positive,no_training_oracle,0.7868576598582022,0.8605548590052952 +ensemble_proxy_residual_v1,ensemble_proxy_residual_v1,high_confidence,0.9127249010595311,8.266632871535347,0.9743016538516992,0.5046275255765511,0.11359231132207244,0.49487169328248787,0.62,True,all_positive,oracle_panel_all_positive,trainable,0.8794643657573092,0.935409141190767 +observed_hic_reabc,logistic_observed_hic_reabc_c00003,high_confidence,0.9088510786344706,8.250497002740769,0.971225883729226,0.5041632127951468,0.11359231132207244,0.4948216432324378,0.62,True,all_positive,oracle_panel_all_positive,trainable,0.8753990380891978,0.930885393667158 +residual_gate,residual_deepset_calibrated_gate_v1,high_confidence,0.9082962937827324,8.230300453547963,0.9735461686684037,0.5036908511995968,0.11359231132207244,0.49487169328248787,0.62,True,all_positive,oracle_panel_all_positive,trainable,0.876341149579022,0.9322167971013964 +proxy_v2_rich,logistic_counterfactual_proxy_v2_rich_highconf_c0003,high_confidence,0.9011235477750658,8.154850344097284,0.9681564319680053,0.5042813790802296,0.11359231132207244,0.49504188596392495,0.62,True,all_positive,oracle_panel_all_positive,trainable,0.8680669145557499,0.9255300678425963 +field_leader,logistic_re2g_extended_highconf_c0003,high_confidence,0.8930804435728318,8.105947498058686,0.9663296875842354,0.5028660952499033,0.11359231132207244,0.4914883098991045,0.62,True,all_positive,oracle_panel_all_positive,trainable,0.8601727031544073,0.9196617616106705 +re2g_extended_features,logistic_re2g_extended_features_c0003,high_confidence,0.887929962563315,8.051253498509926,0.9675583313788817,0.5034001544558766,0.11359231132207244,0.49328269048658857,0.62,True,all_positive,oracle_panel_all_positive,trainable,0.8514551882886848,0.9150376640281919 +distance_abc,logistic_distance_abc,high_confidence,0.8369957412309115,7.609642177358009,0.9546125338469821,0.4935272801926974,0.11359231132207244,0.4758582195388792,0.62,True,all_positive,oracle_panel_all_positive,trainable,0.7886748959059484,0.8751194508905189 +alphagenome_counterfactual,mask_abs_delta_atac_target_promoter_sum,high_confidence,0.8063631866202471,7.291189830468042,0.9201190782418058,0.4821433755541077,0.11359231132207244,0.4601979940960451,0.62,True,all_positive,oracle_panel_all_positive,no_training_oracle,0.761861590163614,0.8371721668687155 +observed_hic_reabc,logistic_observed_hic_reabc_c00003,strict_all,0.6968639791541077,6.149790436858139,0.8724934313559286,0.8142970971980814,0.11374599362967039,0.7417323599075639,0.3,True,all_positive,oracle_panel_all_positive,trainable,0.6582466011869769,0.7345604684278412 +residual_gate,residual_deepset_calibrated_gate_v1,strict_all,0.6905663747495702,6.090939689601892,0.8864235039452412,0.8157532381713217,0.11374599362967039,0.7384316090309048,0.3,True,all_positive,oracle_panel_all_positive,trainable,0.6515088947920468,0.7290916320868442 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a/results/paper/paper_matched_panel_comparison.md b/results/paper/paper_matched_panel_comparison.md new file mode 100644 index 0000000000000000000000000000000000000000..0bedd3ca49f6bfafcd836d373933b52af90f65bb --- /dev/null +++ b/results/paper/paper_matched_panel_comparison.md @@ -0,0 +1,161 @@ +# Matched-Universe Panel Comparison + +Every predictor below is restricted to the **same** AlphaGenome panel +region-gene pairs before scoring, so oracle and trainable AUPRCs share an +identical candidate universe and positive prevalence. This replaces the +earlier headline table, which compared the oracle on a high-prevalence panel +against trainable models on the low-prevalence full 138k benchmark. + +## Matched scoreboards (balanced chromosome-fold test means) + +| panel | scoreboard | result_type | model_name | prevalence | auprc | ci_low | ci_high | auroc | +| --- | --- | --- | --- | --- | --- | --- | --- | --- | +| all_positive | field_compatible_e2g | trainable | ensemble_proxy_residual_v1 | 0.1146 | 0.9273 | 0.8982 | 0.9461 | 0.9799 | +| all_positive | field_compatible_e2g | trainable | logistic_observed_hic_reabc_c00003 | 0.1146 | 0.9262 | 0.8988 | 0.9466 | 0.9785 | +| all_positive | field_compatible_e2g | trainable | residual_deepset_calibrated_gate_v1 | 0.1146 | 0.9237 | 0.8925 | 0.9441 | 0.9788 | +| all_positive | field_compatible_e2g | trainable | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | 0.1146 | 0.9127 | 0.8816 | 0.9364 | 0.9728 | +| all_positive | field_compatible_e2g | trainable | logistic_re2g_extended_highconf_c0003 | 0.1146 | 0.9124 | 0.8789 | 0.9348 | 0.9729 | +| all_positive | field_compatible_e2g | trainable | logistic_re2g_extended_features_c0003 | 0.1146 | 0.9081 | 0.8757 | 0.9306 | 0.9756 | +| all_positive | field_compatible_e2g | trainable | logistic_distance_abc | 0.1146 | 0.8469 | 0.7948 | 0.8858 | 0.9590 | +| all_positive | field_compatible_e2g | no_training_oracle | mask_abs_delta_atac_target_promoter_sum | 0.1146 | 0.8282 | 0.7869 | 0.8606 | 0.9358 | +| all_positive | high_confidence | trainable | ensemble_proxy_residual_v1 | 0.1136 | 0.9127 | 0.8795 | 0.9354 | 0.9743 | +| all_positive | high_confidence | trainable | logistic_observed_hic_reabc_c00003 | 0.1136 | 0.9089 | 0.8754 | 0.9309 | 0.9712 | +| all_positive | high_confidence | trainable | residual_deepset_calibrated_gate_v1 | 0.1136 | 0.9083 | 0.8763 | 0.9322 | 0.9735 | +| all_positive | high_confidence | trainable | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | 0.1136 | 0.9011 | 0.8681 | 0.9255 | 0.9682 | +| all_positive | high_confidence | trainable | logistic_re2g_extended_highconf_c0003 | 0.1136 | 0.8931 | 0.8602 | 0.9197 | 0.9663 | +| all_positive | high_confidence | trainable | logistic_re2g_extended_features_c0003 | 0.1136 | 0.8879 | 0.8515 | 0.9150 | 0.9676 | +| all_positive | high_confidence | trainable | logistic_distance_abc | 0.1136 | 0.8370 | 0.7887 | 0.8751 | 0.9546 | +| all_positive | high_confidence | no_training_oracle | mask_abs_delta_atac_target_promoter_sum | 0.1136 | 0.8064 | 0.7619 | 0.8372 | 0.9201 | +| all_positive | strict_all | trainable | logistic_observed_hic_reabc_c00003 | 0.1137 | 0.6969 | 0.6582 | 0.7346 | 0.8725 | +| all_positive | strict_all | trainable | residual_deepset_calibrated_gate_v1 | 0.1137 | 0.6906 | 0.6515 | 0.7291 | 0.8864 | +| all_positive | strict_all | trainable | ensemble_proxy_residual_v1 | 0.1137 | 0.6897 | 0.6520 | 0.7273 | 0.8769 | +| all_positive | strict_all | trainable | logistic_re2g_extended_features_c0003 | 0.1137 | 0.6710 | 0.6285 | 0.7088 | 0.8665 | +| all_positive | strict_all | trainable | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | 0.1137 | 0.6628 | 0.6245 | 0.7028 | 0.8549 | +| all_positive | strict_all | trainable | logistic_re2g_extended_highconf_c0003 | 0.1137 | 0.6598 | 0.6189 | 0.6981 | 0.8556 | +| all_positive | strict_all | trainable | logistic_distance_abc | 0.1137 | 0.6423 | 0.5990 | 0.6785 | 0.8578 | +| all_positive | strict_all | no_training_oracle | mask_abs_delta_atac_target_promoter_sum | 0.1137 | 0.5952 | 0.5536 | 0.6225 | 0.8268 | +| all_positive | very_high_confidence | trainable | ensemble_proxy_residual_v1 | 0.0791 | 0.9203 | 0.8571 | 0.9475 | 0.9792 | +| all_positive | very_high_confidence | trainable | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | 0.0791 | 0.9184 | 0.8594 | 0.9456 | 0.9813 | +| all_positive | very_high_confidence | trainable | residual_deepset_calibrated_gate_v1 | 0.0791 | 0.9139 | 0.8516 | 0.9396 | 0.9790 | +| all_positive | very_high_confidence | trainable | logistic_observed_hic_reabc_c00003 | 0.0791 | 0.9004 | 0.8342 | 0.9311 | 0.9704 | +| all_positive | very_high_confidence | trainable | logistic_re2g_extended_highconf_c0003 | 0.0791 | 0.8973 | 0.8271 | 0.9295 | 0.9779 | +| all_positive | very_high_confidence | trainable | logistic_re2g_extended_features_c0003 | 0.0791 | 0.8862 | 0.8182 | 0.9215 | 0.9684 | +| all_positive | very_high_confidence | no_training_oracle | mask_abs_delta_atac_target_promoter_sum | 0.0791 | 0.8396 | 0.7519 | 0.8793 | 0.9296 | +| all_positive | very_high_confidence | trainable | logistic_distance_abc | 0.0791 | 0.8266 | 0.7399 | 0.8897 | 0.9659 | +| top100 | field_compatible_e2g | trainable | ensemble_proxy_residual_v1 | 0.1831 | 0.8970 | 0.8333 | 0.9472 | 0.9479 | +| top100 | field_compatible_e2g | trainable | residual_deepset_calibrated_gate_v1 | 0.1831 | 0.8947 | 0.8370 | 0.9467 | 0.9453 | +| top100 | field_compatible_e2g | trainable | logistic_re2g_extended_highconf_c0003 | 0.1831 | 0.8909 | 0.8201 | 0.9425 | 0.9486 | +| top100 | field_compatible_e2g | trainable | logistic_observed_hic_reabc_c00003 | 0.1831 | 0.8879 | 0.8161 | 0.9404 | 0.9497 | +| top100 | field_compatible_e2g | trainable | logistic_re2g_extended_features_c0003 | 0.1831 | 0.8861 | 0.8189 | 0.9372 | 0.9486 | +| top100 | field_compatible_e2g | trainable | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | 0.1831 | 0.8816 | 0.8049 | 0.9349 | 0.9438 | +| top100 | field_compatible_e2g | no_training_oracle | mask_abs_delta_atac_target_promoter_sum | 0.1831 | 0.8477 | 0.7553 | 0.8976 | 0.9211 | +| top100 | field_compatible_e2g | trainable | logistic_distance_abc | 0.1831 | 0.7901 | 0.6619 | 0.8800 | 0.9162 | +| top100 | high_confidence | trainable | ensemble_proxy_residual_v1 | 0.1864 | 0.8903 | 0.8268 | 0.9392 | 0.9455 | +| top100 | high_confidence | trainable | residual_deepset_calibrated_gate_v1 | 0.1864 | 0.8895 | 0.8303 | 0.9399 | 0.9442 | +| top100 | high_confidence | trainable | logistic_re2g_extended_highconf_c0003 | 0.1864 | 0.8791 | 0.8054 | 0.9320 | 0.9425 | +| top100 | high_confidence | trainable | logistic_re2g_extended_features_c0003 | 0.1864 | 0.8754 | 0.8031 | 0.9279 | 0.9436 | +| top100 | high_confidence | trainable | logistic_observed_hic_reabc_c00003 | 0.1864 | 0.8743 | 0.8023 | 0.9259 | 0.9427 | +| top100 | high_confidence | trainable | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | 0.1864 | 0.8743 | 0.7941 | 0.9244 | 0.9404 | +| top100 | high_confidence | no_training_oracle | mask_abs_delta_atac_target_promoter_sum | 0.1864 | 0.8291 | 0.7298 | 0.8819 | 0.9030 | +| top100 | high_confidence | trainable | logistic_distance_abc | 0.1864 | 0.7878 | 0.6741 | 0.8800 | 0.9161 | +| top100 | strict_all | trainable | residual_deepset_calibrated_gate_v1 | 0.1638 | 0.6719 | 0.5950 | 0.7370 | 0.8365 | +| top100 | strict_all | trainable | ensemble_proxy_residual_v1 | 0.1638 | 0.6671 | 0.5940 | 0.7353 | 0.8329 | +| top100 | strict_all | trainable | logistic_observed_hic_reabc_c00003 | 0.1638 | 0.6557 | 0.5842 | 0.7263 | 0.8229 | +| top100 | strict_all | trainable | logistic_re2g_extended_features_c0003 | 0.1638 | 0.6517 | 0.5684 | 0.7205 | 0.8234 | +| top100 | strict_all | trainable | logistic_re2g_extended_highconf_c0003 | 0.1638 | 0.6426 | 0.5640 | 0.7150 | 0.8106 | +| top100 | strict_all | trainable | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | 0.1638 | 0.6411 | 0.5605 | 0.7133 | 0.8138 | +| top100 | strict_all | no_training_oracle | mask_abs_delta_atac_target_promoter_sum | 0.1638 | 0.6058 | 0.5235 | 0.6625 | 0.7839 | +| top100 | strict_all | trainable | logistic_distance_abc | 0.1638 | 0.5931 | 0.5015 | 0.6601 | 0.7979 | +| top100 | very_high_confidence | trainable | residual_deepset_calibrated_gate_v1 | 0.2296 | 0.9742 | 0.9361 | 0.9935 | 0.9890 | +| top100 | very_high_confidence | trainable | ensemble_proxy_residual_v1 | 0.2296 | 0.9724 | 0.9351 | 0.9942 | 0.9876 | +| top100 | very_high_confidence | trainable | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | 0.2296 | 0.9648 | 0.9169 | 0.9896 | 0.9821 | +| top100 | very_high_confidence | trainable | logistic_re2g_extended_highconf_c0003 | 0.2296 | 0.9607 | 0.8942 | 0.9893 | 0.9803 | +| top100 | very_high_confidence | trainable | logistic_observed_hic_reabc_c00003 | 0.2296 | 0.9550 | 0.8900 | 0.9844 | 0.9756 | +| top100 | very_high_confidence | trainable | logistic_re2g_extended_features_c0003 | 0.2296 | 0.9539 | 0.8905 | 0.9828 | 0.9782 | +| top100 | very_high_confidence | no_training_oracle | mask_abs_delta_atac_target_promoter_sum | 0.2296 | 0.9204 | 0.7996 | 0.9482 | 0.9436 | +| top100 | very_high_confidence | trainable | logistic_distance_abc | 0.2296 | 0.8917 | 0.8356 | 0.9682 | 0.9701 | +| top250 | field_compatible_e2g | trainable | ensemble_proxy_residual_v1 | 0.1818 | 0.9457 | 0.9100 | 0.9666 | 0.9791 | +| top250 | field_compatible_e2g | trainable | residual_deepset_calibrated_gate_v1 | 0.1818 | 0.9440 | 0.9070 | 0.9646 | 0.9779 | +| top250 | field_compatible_e2g | trainable | logistic_observed_hic_reabc_c00003 | 0.1818 | 0.9404 | 0.9089 | 0.9654 | 0.9778 | +| top250 | field_compatible_e2g | trainable | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | 0.1818 | 0.9361 | 0.9009 | 0.9594 | 0.9763 | +| top250 | field_compatible_e2g | trainable | logistic_re2g_extended_features_c0003 | 0.1818 | 0.9357 | 0.8970 | 0.9580 | 0.9765 | +| top250 | field_compatible_e2g | trainable | logistic_re2g_extended_highconf_c0003 | 0.1818 | 0.9344 | 0.8936 | 0.9604 | 0.9765 | +| top250 | field_compatible_e2g | no_training_oracle | mask_abs_delta_atac_target_promoter_sum | 0.1818 | 0.8724 | 0.8295 | 0.9083 | 0.9405 | +| top250 | field_compatible_e2g | trainable | logistic_distance_abc | 0.1818 | 0.8661 | 0.8012 | 0.9146 | 0.9567 | +| top250 | high_confidence | trainable | ensemble_proxy_residual_v1 | 0.1856 | 0.9276 | 0.8896 | 0.9518 | 0.9688 | +| top250 | high_confidence | trainable | residual_deepset_calibrated_gate_v1 | 0.1856 | 0.9261 | 0.8894 | 0.9492 | 0.9690 | +| top250 | high_confidence | trainable | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | 0.1856 | 0.9211 | 0.8822 | 0.9473 | 0.9671 | +| top250 | high_confidence | trainable | logistic_observed_hic_reabc_c00003 | 0.1856 | 0.9191 | 0.8822 | 0.9473 | 0.9639 | +| top250 | high_confidence | trainable | logistic_re2g_extended_highconf_c0003 | 0.1856 | 0.9099 | 0.8668 | 0.9404 | 0.9636 | +| top250 | high_confidence | trainable | logistic_re2g_extended_features_c0003 | 0.1856 | 0.9097 | 0.8667 | 0.9374 | 0.9613 | +| top250 | high_confidence | trainable | logistic_distance_abc | 0.1856 | 0.8607 | 0.8004 | 0.9045 | 0.9513 | +| top250 | high_confidence | no_training_oracle | mask_abs_delta_atac_target_promoter_sum | 0.1856 | 0.8443 | 0.7953 | 0.8816 | 0.9156 | +| top250 | strict_all | trainable | residual_deepset_calibrated_gate_v1 | 0.1401 | 0.7370 | 0.6836 | 0.7807 | 0.8859 | +| top250 | strict_all | trainable | ensemble_proxy_residual_v1 | 0.1401 | 0.7348 | 0.6833 | 0.7765 | 0.8793 | +| top250 | strict_all | trainable | logistic_observed_hic_reabc_c00003 | 0.1401 | 0.7294 | 0.6779 | 0.7743 | 0.8676 | +| top250 | strict_all | trainable | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | 0.1401 | 0.7154 | 0.6603 | 0.7610 | 0.8662 | +| top250 | strict_all | trainable | logistic_re2g_extended_features_c0003 | 0.1401 | 0.7147 | 0.6558 | 0.7576 | 0.8668 | +| top250 | strict_all | trainable | logistic_re2g_extended_highconf_c0003 | 0.1401 | 0.7033 | 0.6495 | 0.7493 | 0.8629 | +| top250 | strict_all | trainable | logistic_distance_abc | 0.1401 | 0.6626 | 0.6043 | 0.7123 | 0.8524 | +| top250 | strict_all | no_training_oracle | mask_abs_delta_atac_target_promoter_sum | 0.1401 | 0.6438 | 0.5857 | 0.6868 | 0.8155 | +| top250 | very_high_confidence | trainable | ensemble_proxy_residual_v1 | 0.2010 | 0.9501 | 0.9044 | 0.9701 | 0.9761 | +| top250 | very_high_confidence | trainable | residual_deepset_calibrated_gate_v1 | 0.2010 | 0.9498 | 0.9043 | 0.9676 | 0.9775 | +| top250 | very_high_confidence | trainable | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | 0.2010 | 0.9463 | 0.9102 | 0.9719 | 0.9763 | +| top250 | very_high_confidence | trainable | logistic_observed_hic_reabc_c00003 | 0.2010 | 0.9320 | 0.8886 | 0.9597 | 0.9646 | +| top250 | very_high_confidence | trainable | logistic_re2g_extended_highconf_c0003 | 0.2010 | 0.9266 | 0.8732 | 0.9542 | 0.9704 | +| top250 | very_high_confidence | trainable | logistic_re2g_extended_features_c0003 | 0.2010 | 0.9211 | 0.8696 | 0.9499 | 0.9617 | +| top250 | very_high_confidence | no_training_oracle | mask_abs_delta_atac_target_promoter_sum | 0.2010 | 0.8881 | 0.8131 | 0.9181 | 0.9222 | +| top250 | very_high_confidence | trainable | logistic_distance_abc | 0.2010 | 0.8842 | 0.8119 | 0.9377 | 0.9629 | +| top50 | field_compatible_e2g | trainable | residual_deepset_calibrated_gate_v1 | 0.1947 | 0.8713 | 0.7627 | 0.9296 | 0.9160 | +| top50 | field_compatible_e2g | trainable | ensemble_proxy_residual_v1 | 0.1947 | 0.8693 | 0.7446 | 0.9250 | 0.9145 | +| top50 | field_compatible_e2g | trainable | logistic_observed_hic_reabc_c00003 | 0.1947 | 0.8636 | 0.7400 | 0.9193 | 0.9240 | +| top50 | field_compatible_e2g | trainable | logistic_re2g_extended_features_c0003 | 0.1947 | 0.8568 | 0.7464 | 0.9183 | 0.9228 | +| top50 | field_compatible_e2g | trainable | logistic_re2g_extended_highconf_c0003 | 0.1947 | 0.8530 | 0.7139 | 0.9177 | 0.9175 | +| top50 | field_compatible_e2g | trainable | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | 0.1947 | 0.8431 | 0.6878 | 0.9081 | 0.9107 | +| top50 | field_compatible_e2g | no_training_oracle | mask_abs_delta_atac_target_promoter_sum | 0.1947 | 0.8208 | 0.6860 | 0.8988 | 0.8853 | +| top50 | field_compatible_e2g | trainable | logistic_distance_abc | 0.1947 | 0.8027 | 0.6018 | 0.8877 | 0.9025 | +| top50 | high_confidence | trainable | residual_deepset_calibrated_gate_v1 | 0.1920 | 0.8708 | 0.7626 | 0.9295 | 0.9165 | +| top50 | high_confidence | trainable | ensemble_proxy_residual_v1 | 0.1920 | 0.8673 | 0.7435 | 0.9246 | 0.9135 | +| top50 | high_confidence | trainable | logistic_observed_hic_reabc_c00003 | 0.1920 | 0.8636 | 0.7400 | 0.9193 | 0.9259 | +| top50 | high_confidence | trainable | logistic_re2g_extended_features_c0003 | 0.1920 | 0.8565 | 0.7462 | 0.9182 | 0.9237 | +| top50 | high_confidence | trainable | logistic_re2g_extended_highconf_c0003 | 0.1920 | 0.8517 | 0.7133 | 0.9172 | 0.9165 | +| top50 | high_confidence | trainable | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | 0.1920 | 0.8405 | 0.6876 | 0.9078 | 0.9089 | +| top50 | high_confidence | no_training_oracle | mask_abs_delta_atac_target_promoter_sum | 0.1920 | 0.8201 | 0.6859 | 0.8987 | 0.8857 | +| top50 | high_confidence | trainable | logistic_distance_abc | 0.1920 | 0.8025 | 0.6017 | 0.8876 | 0.9036 | +| top50 | strict_all | trainable | residual_deepset_calibrated_gate_v1 | 0.1791 | 0.6591 | 0.5401 | 0.7356 | 0.8166 | +| top50 | strict_all | trainable | logistic_observed_hic_reabc_c00003 | 0.1791 | 0.6523 | 0.5433 | 0.7340 | 0.8174 | +| top50 | strict_all | trainable | logistic_re2g_extended_features_c0003 | 0.1791 | 0.6501 | 0.5142 | 0.7235 | 0.8134 | +| top50 | strict_all | trainable | ensemble_proxy_residual_v1 | 0.1791 | 0.6469 | 0.5284 | 0.7277 | 0.8116 | +| top50 | strict_all | no_training_oracle | mask_abs_delta_atac_target_promoter_sum | 0.1791 | 0.6457 | 0.5289 | 0.6937 | 0.8091 | +| top50 | strict_all | trainable | logistic_distance_abc | 0.1791 | 0.6383 | 0.5127 | 0.7022 | 0.8124 | +| top50 | strict_all | trainable | logistic_re2g_extended_highconf_c0003 | 0.1791 | 0.6329 | 0.4942 | 0.7138 | 0.7862 | +| top50 | strict_all | trainable | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | 0.1791 | 0.5973 | 0.4745 | 0.6884 | 0.7802 | +| top50 | very_high_confidence | trainable | residual_deepset_calibrated_gate_v1 | 0.1804 | 0.9868 | 0.9266 | 1.0000 | 0.9878 | +| top50 | very_high_confidence | trainable | ensemble_proxy_residual_v1 | 0.1804 | 0.9848 | 0.9183 | 1.0000 | 0.9837 | +| top50 | very_high_confidence | trainable | logistic_re2g_extended_features_c0003 | 0.1804 | 0.9774 | 0.9046 | 1.0000 | 0.9840 | +| top50 | very_high_confidence | trainable | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | 0.1804 | 0.9718 | 0.8694 | 1.0000 | 0.9714 | +| top50 | very_high_confidence | trainable | logistic_observed_hic_reabc_c00003 | 0.1804 | 0.9714 | 0.8712 | 1.0000 | 0.9788 | +| top50 | very_high_confidence | no_training_oracle | mask_abs_delta_atac_target_promoter_sum | 0.1804 | 0.9647 | 0.8301 | 0.9958 | 0.9735 | +| top50 | very_high_confidence | trainable | logistic_re2g_extended_highconf_c0003 | 0.1804 | 0.9639 | 0.8531 | 0.9981 | 0.9726 | +| top50 | very_high_confidence | trainable | logistic_distance_abc | 0.1804 | 0.9589 | 0.7980 | 0.9813 | 0.9686 | + +## Paired oracle - best-trainable AUPRC difference (region bootstrap, identical rows) + +| scoreboard | n_pairs | n_regions | n_positive | auprc_a | auprc_b | diff | diff_mean | ci_low | ci_high | p_value | panel | oracle_feature | best_trainable | +| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | +| strict_all | 669 | 50 | 111 | 0.6113 | 0.6341 | -0.0228 | -0.0243 | -0.1010 | 0.0493 | 0.5500 | top50 | mask_abs_delta_atac_target_promoter_sum | residual_gate | +| high_confidence | 271 | 50 | 47 | 0.8010 | 0.8555 | -0.0544 | -0.0553 | -0.1385 | 0.0116 | 0.1400 | top50 | mask_abs_delta_atac_target_promoter_sum | residual_gate | +| field_compatible_e2g | 267 | 50 | 47 | 0.8014 | 0.8557 | -0.0543 | -0.0552 | -0.1385 | 0.0117 | 0.1480 | top50 | mask_abs_delta_atac_target_promoter_sum | residual_gate | +| very_high_confidence | 127 | 44 | 19 | 0.9298 | 0.9796 | -0.0498 | -0.0482 | -0.1193 | -0.0038 | 0.0420 | top50 | mask_abs_delta_atac_target_promoter_sum | residual_gate | +| strict_all | 1063 | 100 | 164 | 0.5930 | 0.6675 | -0.0745 | -0.0760 | -0.1319 | -0.0213 | 0.0020 | top100 | mask_abs_delta_atac_target_promoter_sum | residual_gate | +| high_confidence | 449 | 98 | 74 | 0.8098 | 0.8862 | -0.0764 | -0.0769 | -0.1386 | -0.0236 | 0.0060 | top100 | mask_abs_delta_atac_target_promoter_sum | residual_gate | +| field_compatible_e2g | 435 | 97 | 71 | 0.8287 | 0.8928 | -0.0640 | -0.0643 | -0.1224 | -0.0122 | 0.0160 | top100 | mask_abs_delta_atac_target_promoter_sum | residual_gate | +| very_high_confidence | 234 | 90 | 46 | 0.8842 | 0.9711 | -0.0870 | -0.0871 | -0.1575 | -0.0328 | 0.0000 | top100 | mask_abs_delta_atac_target_promoter_sum | residual_gate | +| strict_all | 2302 | 250 | 314 | 0.6368 | 0.7334 | -0.0966 | -0.0965 | -0.1367 | -0.0535 | 0.0000 | top250 | mask_abs_delta_atac_target_promoter_sum | residual_gate | +| high_confidence | 1070 | 246 | 187 | 0.8412 | 0.9205 | -0.0792 | -0.0791 | -0.1171 | -0.0438 | 0.0000 | top250 | mask_abs_delta_atac_target_promoter_sum | residual_gate | +| field_compatible_e2g | 1013 | 238 | 173 | 0.8704 | 0.9374 | -0.0670 | -0.0672 | -0.1025 | -0.0341 | 0.0000 | top250 | mask_abs_delta_atac_target_promoter_sum | residual_gate | +| very_high_confidence | 530 | 202 | 100 | 0.8674 | 0.9382 | -0.0707 | -0.0705 | -0.1150 | -0.0329 | 0.0000 | top250 | mask_abs_delta_atac_target_promoter_sum | residual_gate | +| strict_all | 5904 | 600 | 664 | 0.5885 | 0.6958 | -0.1072 | -0.1078 | -0.1392 | -0.0760 | 0.0000 | all_positive | mask_abs_delta_atac_target_promoter_sum | observed_hic_reabc | +| high_confidence | 2753 | 570 | 308 | 0.8014 | 0.9044 | -0.1030 | -0.1027 | -0.1346 | -0.0729 | 0.0000 | all_positive | mask_abs_delta_atac_target_promoter_sum | observed_hic_reabc | +| field_compatible_e2g | 2572 | 547 | 291 | 0.8235 | 0.9229 | -0.0994 | -0.0992 | -0.1299 | -0.0666 | 0.0000 | all_positive | mask_abs_delta_atac_target_promoter_sum | observed_hic_reabc | +| very_high_confidence | 1293 | 465 | 100 | 0.8186 | 0.8858 | -0.0672 | -0.0671 | -0.1151 | -0.0230 | 0.0000 | all_positive | mask_abs_delta_atac_target_promoter_sum | observed_hic_reabc | \ No newline at end of file diff --git a/results/paper/paper_matched_panel_paired_diff.csv b/results/paper/paper_matched_panel_paired_diff.csv new file mode 100644 index 0000000000000000000000000000000000000000..f8a6252b0586b05ce991c5441d7cfb4b3df12cd6 --- /dev/null +++ b/results/paper/paper_matched_panel_paired_diff.csv @@ -0,0 +1,17 @@ +scoreboard,n_pairs,n_regions,n_positive,auprc_a,auprc_b,diff,diff_mean,ci_low,ci_high,p_value,panel,oracle_feature,best_trainable +strict_all,669,50,111,0.6113252082150445,0.6341481343732525,-0.022822926158207912,-0.02426601709571738,-0.10095789449466176,0.04932632439380514,0.55,top50,mask_abs_delta_atac_target_promoter_sum,residual_gate +high_confidence,271,50,47,0.8010372600819017,0.8554604404859615,-0.0544231804040598,-0.055339407185123875,-0.1385204220116727,0.011638794516127413,0.14,top50,mask_abs_delta_atac_target_promoter_sum,residual_gate +field_compatible_e2g,267,50,47,0.8014144828740529,0.8556809338846298,-0.05426645101057692,-0.05520755700553433,-0.13851077648179264,0.011740232251673364,0.148,top50,mask_abs_delta_atac_target_promoter_sum,residual_gate +very_high_confidence,127,44,19,0.9298221217539536,0.9796264855687606,-0.04980436381480702,-0.048229817449301916,-0.11925328274759477,-0.0037662812333865148,0.042,top50,mask_abs_delta_atac_target_promoter_sum,residual_gate +strict_all,1063,100,164,0.5930196768479018,0.6675101955554663,-0.07449051870756451,-0.07598462729734698,-0.13191480725186977,-0.02128894664736452,0.002,top100,mask_abs_delta_atac_target_promoter_sum,residual_gate 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+high_confidence,2753,570,308,0.8014010451936466,0.9043991047021523,-0.10299805950850571,-0.10265400589387705,-0.13462698863552788,-0.07288447971342318,0.0,all_positive,mask_abs_delta_atac_target_promoter_sum,observed_hic_reabc +field_compatible_e2g,2572,547,291,0.8234656171861537,0.9229028741297031,-0.09943725694354932,-0.09924636815353412,-0.1299266086839591,-0.06662316434432485,0.0,all_positive,mask_abs_delta_atac_target_promoter_sum,observed_hic_reabc +very_high_confidence,1293,465,100,0.8186234252586512,0.8858484687873412,-0.06722504352869008,-0.06714334150927968,-0.115133223582139,-0.022996311589286042,0.0,all_positive,mask_abs_delta_atac_target_promoter_sum,observed_hic_reabc diff --git a/results/paper/paper_oracle_bootstrap_ci.csv b/results/paper/paper_oracle_bootstrap_ci.csv new file mode 100644 index 0000000000000000000000000000000000000000..3a8dfd42a6acb2a35ca32ad03624956b980b79e3 --- /dev/null +++ b/results/paper/paper_oracle_bootstrap_ci.csv @@ -0,0 +1,29 @@ +model_name,feature_name,scoreboard,n_regions,n_pairs,n_positive,observed_auprc,bootstrap_mean_auprc,ci_low,ci_high,n_iterations +sequence_to_function_oracle__alphagenome_k562_counterfactual_mask_region_complete_top250__mask_abs_delta_atac_target_promoter_sum,alphagenome_k562_counterfactual_mask_region_complete_top250__mask_abs_delta_atac_target_promoter_sum,strict_all,250,2302,314,0.6368191161663307,0.6381527199334494,0.5916561300599578,0.6878303158775881,500 +sequence_to_function_oracle__alphagenome_k562_counterfactual_mask_region_complete_top250__mask_abs_delta_atac_target_promoter_mean,alphagenome_k562_counterfactual_mask_region_complete_top250__mask_abs_delta_atac_target_promoter_mean,strict_all,250,2302,314,0.6368191161663307,0.6381527199334494,0.5916561300599578,0.6878303158775881,500 +sequence_to_function_oracle__alphagenome_k562_counterfactual_mask_region_complete_top250__mask_abs_delta_atac_target_promoter_sum,alphagenome_k562_counterfactual_mask_region_complete_top250__mask_abs_delta_atac_target_promoter_sum,high_confidence,246,1070,187,0.8412454934994064,0.8412865651725324,0.7997195512510122,0.8778344100716805,500 +sequence_to_function_oracle__alphagenome_k562_counterfactual_mask_region_complete_top250__mask_abs_delta_atac_target_promoter_mean,alphagenome_k562_counterfactual_mask_region_complete_top250__mask_abs_delta_atac_target_promoter_mean,high_confidence,246,1070,187,0.8412454934994064,0.8412865651725324,0.7997195512510122,0.8778344100716805,500 +sequence_to_function_oracle__alphagenome_k562_counterfactual_mask_region_complete_top250__mask_abs_delta_atac_target_promoter_sum,alphagenome_k562_counterfactual_mask_region_complete_top250__mask_abs_delta_atac_target_promoter_sum,field_compatible_e2g,238,1013,173,0.8704229890276831,0.8700471663301373,0.8281220972867944,0.9103785477422854,500 +sequence_to_function_oracle__alphagenome_k562_counterfactual_mask_region_complete_top250__mask_abs_delta_atac_target_promoter_mean,alphagenome_k562_counterfactual_mask_region_complete_top250__mask_abs_delta_atac_target_promoter_mean,field_compatible_e2g,238,1013,173,0.8704229890276831,0.8700471663301373,0.8281220972867944,0.9103785477422854,500 +sequence_to_function_oracle__alphagenome_k562_counterfactual_mask_region_complete_top250__mask_abs_delta_atac_target_promoter_sum,alphagenome_k562_counterfactual_mask_region_complete_top250__mask_abs_delta_atac_target_promoter_sum,very_high_confidence,202,530,100,0.8674273097482873,0.8674487195995607,0.8170730204616092,0.915278679215409,500 +sequence_to_function_oracle__alphagenome_k562_counterfactual_mask_region_complete_top250__mask_abs_delta_atac_target_promoter_mean,alphagenome_k562_counterfactual_mask_region_complete_top250__mask_abs_delta_atac_target_promoter_mean,very_high_confidence,202,530,100,0.8674273097482873,0.8674487195995607,0.8170730204616092,0.915278679215409,500 +sequence_to_function_oracle__alphagenome_k562_counterfactual_mask_region_complete_top250__mask_abs_delta_atac_target_promoter_sum,alphagenome_k562_counterfactual_mask_region_complete_top250__mask_abs_delta_atac_target_promoter_sum,re2g_covered_strict,243,2149,289,0.6708511118263218,0.6720615459504836,0.6203097943726611,0.7203358941708583,500 +sequence_to_function_oracle__alphagenome_k562_counterfactual_mask_region_complete_top250__mask_abs_delta_atac_target_promoter_mean,alphagenome_k562_counterfactual_mask_region_complete_top250__mask_abs_delta_atac_target_promoter_mean,re2g_covered_strict,243,2149,289,0.6708511118263218,0.6720615459504836,0.6203097943726611,0.7203358941708583,500 +sequence_to_function_oracle__alphagenome_k562_counterfactual_mask_region_complete_top250__mask_abs_delta_atac_target_promoter_sum,alphagenome_k562_counterfactual_mask_region_complete_top250__mask_abs_delta_atac_target_promoter_sum,re2g_covered_high_confidence,238,1013,173,0.8704229890276831,0.8700471663301373,0.8281220972867944,0.9103785477422854,500 +sequence_to_function_oracle__alphagenome_k562_counterfactual_mask_region_complete_top250__mask_abs_delta_atac_target_promoter_mean,alphagenome_k562_counterfactual_mask_region_complete_top250__mask_abs_delta_atac_target_promoter_mean,re2g_covered_high_confidence,238,1013,173,0.8704229890276831,0.8700471663301373,0.8281220972867944,0.9103785477422854,500 +sequence_to_function_oracle__alphagenome_k562_counterfactual_mask_region_complete_top250__mask_abs_delta_atac_target_promoter_sum,alphagenome_k562_counterfactual_mask_region_complete_top250__mask_abs_delta_atac_target_promoter_sum,re2g_covered_very_high_confidence,191,493,88,0.9169638689967248,0.9169331316403868,0.8769607220408663,0.954359325342468,500 +sequence_to_function_oracle__alphagenome_k562_counterfactual_mask_region_complete_top250__mask_abs_delta_atac_target_promoter_mean,alphagenome_k562_counterfactual_mask_region_complete_top250__mask_abs_delta_atac_target_promoter_mean,re2g_covered_very_high_confidence,191,493,88,0.9169638689967248,0.9169331316403868,0.8769607220408663,0.954359325342468,500 +sequence_to_function_oracle__alphagenome_k562_counterfactual_mask_region_complete_all_positive__mask_abs_delta_atac_target_promoter_sum,alphagenome_k562_counterfactual_mask_region_complete_all_positive__mask_abs_delta_atac_target_promoter_sum,strict_all,600,5904,664,0.5885357812553353,0.5883805558377116,0.5533808406960107,0.6235176099600921,500 +sequence_to_function_oracle__alphagenome_k562_counterfactual_mask_region_complete_all_positive__mask_abs_delta_atac_target_promoter_mean,alphagenome_k562_counterfactual_mask_region_complete_all_positive__mask_abs_delta_atac_target_promoter_mean,strict_all,600,5904,664,0.5885357812553353,0.5883805558377116,0.5533808406960107,0.6235176099600921,500 +sequence_to_function_oracle__alphagenome_k562_counterfactual_mask_region_complete_all_positive__mask_abs_delta_atac_target_promoter_sum,alphagenome_k562_counterfactual_mask_region_complete_all_positive__mask_abs_delta_atac_target_promoter_sum,high_confidence,570,2753,308,0.8014010451936466,0.8016266594602566,0.7628939287138962,0.8364749838692832,500 +sequence_to_function_oracle__alphagenome_k562_counterfactual_mask_region_complete_all_positive__mask_abs_delta_atac_target_promoter_mean,alphagenome_k562_counterfactual_mask_region_complete_all_positive__mask_abs_delta_atac_target_promoter_mean,high_confidence,570,2753,308,0.8014010451936466,0.8016266594602566,0.7628939287138962,0.8364749838692832,500 +sequence_to_function_oracle__alphagenome_k562_counterfactual_mask_region_complete_all_positive__mask_abs_delta_atac_target_promoter_sum,alphagenome_k562_counterfactual_mask_region_complete_all_positive__mask_abs_delta_atac_target_promoter_sum,field_compatible_e2g,547,2572,291,0.8234656171861537,0.8245388919123975,0.7850229718325503,0.8599206438948719,500 +sequence_to_function_oracle__alphagenome_k562_counterfactual_mask_region_complete_all_positive__mask_abs_delta_atac_target_promoter_mean,alphagenome_k562_counterfactual_mask_region_complete_all_positive__mask_abs_delta_atac_target_promoter_mean,field_compatible_e2g,547,2572,291,0.8234656171861537,0.8245388919123975,0.7850229718325503,0.8599206438948719,500 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+sequence_to_function_oracle__alphagenome_k562_counterfactual_mask_region_complete_all_positive__mask_abs_delta_atac_target_promoter_sum,alphagenome_k562_counterfactual_mask_region_complete_all_positive__mask_abs_delta_atac_target_promoter_sum,re2g_covered_strict,578,5387,621,0.6094225974398703,0.609231782388191,0.5706806205580913,0.6413178270155414,500 +sequence_to_function_oracle__alphagenome_k562_counterfactual_mask_region_complete_all_positive__mask_abs_delta_atac_target_promoter_mean,alphagenome_k562_counterfactual_mask_region_complete_all_positive__mask_abs_delta_atac_target_promoter_mean,re2g_covered_strict,578,5387,621,0.6094225974398703,0.609231782388191,0.5706806205580913,0.6413178270155414,500 +sequence_to_function_oracle__alphagenome_k562_counterfactual_mask_region_complete_all_positive__mask_abs_delta_atac_target_promoter_sum,alphagenome_k562_counterfactual_mask_region_complete_all_positive__mask_abs_delta_atac_target_promoter_sum,re2g_covered_high_confidence,547,2572,291,0.8234656171861537,0.8245388919123975,0.7850229718325503,0.8599206438948719,500 +sequence_to_function_oracle__alphagenome_k562_counterfactual_mask_region_complete_all_positive__mask_abs_delta_atac_target_promoter_mean,alphagenome_k562_counterfactual_mask_region_complete_all_positive__mask_abs_delta_atac_target_promoter_mean,re2g_covered_high_confidence,547,2572,291,0.8234656171861537,0.8245388919123975,0.7850229718325503,0.8599206438948719,500 +sequence_to_function_oracle__alphagenome_k562_counterfactual_mask_region_complete_all_positive__mask_abs_delta_atac_target_promoter_sum,alphagenome_k562_counterfactual_mask_region_complete_all_positive__mask_abs_delta_atac_target_promoter_sum,re2g_covered_very_high_confidence,436,1194,88,0.878391754712617,0.8797089580624825,0.8264682628212018,0.925234873994,500 +sequence_to_function_oracle__alphagenome_k562_counterfactual_mask_region_complete_all_positive__mask_abs_delta_atac_target_promoter_mean,alphagenome_k562_counterfactual_mask_region_complete_all_positive__mask_abs_delta_atac_target_promoter_mean,re2g_covered_very_high_confidence,436,1194,88,0.878391754712617,0.8797089580624825,0.8264682628212018,0.925234873994,500 diff --git a/results/paper/paper_reporting_inputs_included.csv b/results/paper/paper_reporting_inputs_included.csv new file mode 100644 index 0000000000000000000000000000000000000000..ad23a6c478a11bf32ce4a3c8ec45d89c1a7a0a09 --- /dev/null +++ b/results/paper/paper_reporting_inputs_included.csv @@ -0,0 +1,14 @@ +source_name,path,n_rows +distance_abc,results/s2t/gasperini_gse120861/learned_logistic_distance_abc_predictions_labeled.parquet,403220 +re2g_extended_features,results/s2t/gasperini_gse120861/learned_logistic_re2g_extended_features_c0003_predictions_labeled.parquet,403220 +observed_hic_reabc,results/s2t/gasperini_gse120861/learned_logistic_observed_hic_reabc_c00003_predictions_labeled.parquet,403220 +residual_gate,results/s2t/gasperini_gse120861/learned_residual_deepset_calibrated_gate_v1_predictions_labeled.parquet,403220 +field_leader,results/s2t/gasperini_gse120861/learned_logistic_re2g_extended_highconf_c0003_predictions_labeled.parquet,403220 +proxy_v1,results/s2t/gasperini_gse120861/learned_logistic_counterfactual_proxy_highconf_c0003_predictions_labeled.parquet,403220 +proxy_v2,results/s2t/gasperini_gse120861/learned_logistic_counterfactual_proxy_v2_highconf_c0003_predictions_labeled.parquet,403220 +proxy_v2_rich,results/s2t/gasperini_gse120861/learned_logistic_counterfactual_proxy_v2_rich_highconf_c0003_predictions_labeled.parquet,403220 +proxy_v2_rich_without_contact,results/s2t/gasperini_gse120861/learned_s2t_proxy_v2_without_contact_logistic_predictions_labeled.parquet,403220 +proxy_v2_rich_without_contact_field_tuned,results/s2t/gasperini_gse120861/learned_proxy_v2_rich_without_contact_high_confidence_c0p01_predictions_labeled.parquet,403220 +residual_proxy_v2_rich,results/s2t/gasperini_gse120861/learned_molecular_residual_proxy_v2_rich_highconf_c003_predictions_labeled.parquet,403220 +residual_proxy_v2_rich_strict,results/s2t/gasperini_gse120861/learned_molecular_residual_proxy_v2_rich_strict_broad_c001_predictions_labeled.parquet,403220 +ensemble_proxy_residual_v1,results/s2t/gasperini_gse120861/ensemble_proxy_residual_v1_predictions_labeled.parquet,403220 diff --git a/results/paper/paper_reporting_inputs_skipped.csv b/results/paper/paper_reporting_inputs_skipped.csv new file mode 100644 index 0000000000000000000000000000000000000000..8b137891791fe96927ad78e64b0aad7bded08bdc --- /dev/null +++ b/results/paper/paper_reporting_inputs_skipped.csv @@ -0,0 +1 @@ + diff --git a/results/paper/paper_reporting_summary.md b/results/paper/paper_reporting_summary.md new file mode 100644 index 0000000000000000000000000000000000000000..71b2eef3b7e6641f8736e83066b3e3e47a33fc8d --- /dev/null +++ b/results/paper/paper_reporting_summary.md @@ -0,0 +1,135 @@ +# Paper Reporting Summary + +This directory is the paper-facing result snapshot generated from existing Seq2State artifacts. + +## Headline Comparison + +Only full-benchmark trainable rows are included here, so AUPRCs are directly comparable within each scoreboard. + +| result_type | comparison_scope | source_name | model_or_feature | scoreboard | evaluation_universe | auprc | ci_low | ci_high | auroc | mrr | recall_at_1 | terms_ok_for_training | +| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | +| trainable | headline_full_benchmark | ensemble_proxy_residual_v1 | ensemble_proxy_residual_v1 | field_compatible_e2g | full_benchmark_138k | 0.6515 | 0.5661 | 0.6866 | 0.9790 | 0.0612 | 0.0603 | True | +| trainable | headline_full_benchmark | proxy_v2_rich_without_contact_field_tuned | proxy_v2_rich_without_contact_high_confidence_c0p01 | field_compatible_e2g | full_benchmark_138k | 0.6440 | 0.5547 | 0.6778 | 0.9750 | 0.0613 | 0.0606 | True | +| trainable | headline_full_benchmark | proxy_v2_rich_without_contact | s2t_proxy_v2_without_contact_logistic | field_compatible_e2g | full_benchmark_138k | 0.6379 | 0.5414 | 0.6664 | 0.9741 | 0.0612 | 0.0603 | True | +| trainable | headline_full_benchmark | residual_proxy_v2_rich | molecular_residual_proxy_v2_rich_highconf_c003 | field_compatible_e2g | full_benchmark_138k | 0.6349 | 0.5590 | 0.6736 | 0.9768 | 0.0613 | 0.0605 | True | +| trainable | headline_full_benchmark | field_leader | logistic_re2g_extended_highconf_c0003 | field_compatible_e2g | full_benchmark_138k | 0.6286 | 0.5341 | 0.6553 | 0.9747 | 0.0612 | 0.0603 | True | +| trainable | headline_full_benchmark | residual_proxy_v2_rich_strict | molecular_residual_proxy_v2_rich_strict_broad_c001 | field_compatible_e2g | full_benchmark_138k | 0.6250 | 0.5470 | 0.6608 | 0.9761 | 0.0611 | 0.0603 | True | +| trainable | headline_full_benchmark | residual_gate | residual_deepset_calibrated_gate_v1 | field_compatible_e2g | full_benchmark_138k | 0.6163 | 0.5266 | 0.6481 | 0.9747 | 0.0611 | 0.0603 | True | +| trainable | headline_full_benchmark | proxy_v2_rich | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | field_compatible_e2g | full_benchmark_138k | 0.6125 | 0.5291 | 0.6570 | 0.9743 | 0.0612 | 0.0603 | True | +| trainable | headline_full_benchmark | re2g_extended_features | logistic_re2g_extended_features_c0003 | field_compatible_e2g | full_benchmark_138k | 0.6084 | 0.5184 | 0.6431 | 0.9761 | 0.0612 | 0.0603 | True | +| trainable | headline_full_benchmark | observed_hic_reabc | logistic_observed_hic_reabc_c00003 | field_compatible_e2g | full_benchmark_138k | 0.5951 | 0.5036 | 0.6294 | 0.9768 | 0.0613 | 0.0605 | True | +| trainable | headline_full_benchmark | proxy_v2 | logistic_counterfactual_proxy_v2_highconf_c0003 | field_compatible_e2g | full_benchmark_138k | 0.5730 | 0.4814 | 0.6018 | 0.9715 | 0.0609 | 0.0598 | True | +| trainable | headline_full_benchmark | proxy_v1 | logistic_counterfactual_proxy_highconf_c0003 | field_compatible_e2g | full_benchmark_138k | 0.4898 | 0.4202 | 0.5399 | 0.9636 | 0.0604 | 0.0592 | True | +| trainable | headline_full_benchmark | distance_abc | logistic_distance_abc | field_compatible_e2g | full_benchmark_138k | 0.3860 | 0.3147 | 0.4282 | 0.9501 | 0.0598 | 0.0578 | True | +| trainable | headline_full_benchmark | ensemble_proxy_residual_v1 | ensemble_proxy_residual_v1 | high_confidence | full_benchmark_138k | 0.6286 | 0.5443 | 0.6640 | 0.9742 | 0.0592 | 0.0581 | True | +| trainable | headline_full_benchmark | proxy_v2_rich_without_contact_field_tuned | proxy_v2_rich_without_contact_high_confidence_c0p01 | high_confidence | full_benchmark_138k | 0.6215 | 0.5333 | 0.6598 | 0.9705 | 0.0592 | 0.0581 | True | +| trainable | headline_full_benchmark | proxy_v2_rich_without_contact | s2t_proxy_v2_without_contact_logistic | high_confidence | full_benchmark_138k | 0.6163 | 0.5211 | 0.6444 | 0.9702 | 0.0591 | 0.0579 | True | +| trainable | headline_full_benchmark | residual_proxy_v2_rich | molecular_residual_proxy_v2_rich_highconf_c003 | high_confidence | full_benchmark_138k | 0.6121 | 0.5295 | 0.6500 | 0.9725 | 0.0592 | 0.0581 | True | +| trainable | headline_full_benchmark | field_leader | logistic_re2g_extended_highconf_c0003 | high_confidence | full_benchmark_138k | 0.6042 | 0.5052 | 0.6352 | 0.9694 | 0.0591 | 0.0577 | True | +| trainable | headline_full_benchmark | residual_proxy_v2_rich_strict | molecular_residual_proxy_v2_rich_strict_broad_c001 | high_confidence | full_benchmark_138k | 0.6022 | 0.5200 | 0.6393 | 0.9713 | 0.0592 | 0.0581 | True | +| trainable | headline_full_benchmark | proxy_v2_rich | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | high_confidence | full_benchmark_138k | 0.5936 | 0.5131 | 0.6351 | 0.9704 | 0.0592 | 0.0581 | True | +| trainable | headline_full_benchmark | residual_gate | residual_deepset_calibrated_gate_v1 | high_confidence | full_benchmark_138k | 0.5931 | 0.5050 | 0.6267 | 0.9701 | 0.0591 | 0.0581 | True | +| trainable | headline_full_benchmark | re2g_extended_features | logistic_re2g_extended_features_c0003 | high_confidence | full_benchmark_138k | 0.5846 | 0.4925 | 0.6212 | 0.9699 | 0.0591 | 0.0579 | True | +| trainable | headline_full_benchmark | observed_hic_reabc | logistic_observed_hic_reabc_c00003 | high_confidence | full_benchmark_138k | 0.5750 | 0.4818 | 0.6083 | 0.9712 | 0.0592 | 0.0581 | True | +| trainable | headline_full_benchmark | proxy_v2 | logistic_counterfactual_proxy_v2_highconf_c0003 | high_confidence | full_benchmark_138k | 0.5552 | 0.4622 | 0.5897 | 0.9686 | 0.0589 | 0.0575 | True | +| trainable | headline_full_benchmark | proxy_v1 | logistic_counterfactual_proxy_highconf_c0003 | high_confidence | full_benchmark_138k | 0.4762 | 0.4075 | 0.5253 | 0.9622 | 0.0587 | 0.0573 | True | +| trainable | headline_full_benchmark | distance_abc | logistic_distance_abc | high_confidence | full_benchmark_138k | 0.3672 | 0.3054 | 0.4129 | 0.9465 | 0.0580 | 0.0559 | True | +| trainable | headline_full_benchmark | ensemble_proxy_residual_v1 | ensemble_proxy_residual_v1 | strict_all | full_benchmark_138k | 0.2965 | 0.2543 | 0.3232 | 0.8816 | 0.0886 | 0.0806 | True | +| trainable | headline_full_benchmark | residual_proxy_v2_rich_strict | molecular_residual_proxy_v2_rich_strict_broad_c001 | strict_all | full_benchmark_138k | 0.2900 | 0.2416 | 0.3172 | 0.8831 | 0.0886 | 0.0805 | True | +| trainable | headline_full_benchmark | residual_proxy_v2_rich | molecular_residual_proxy_v2_rich_highconf_c003 | strict_all | full_benchmark_138k | 0.2879 | 0.2426 | 0.3165 | 0.8790 | 0.0886 | 0.0809 | True | +| trainable | headline_full_benchmark | residual_gate | residual_deepset_calibrated_gate_v1 | strict_all | full_benchmark_138k | 0.2849 | 0.2430 | 0.3101 | 0.8817 | 0.0887 | 0.0803 | True | +| trainable | headline_full_benchmark | proxy_v2_rich_without_contact | s2t_proxy_v2_without_contact_logistic | strict_all | full_benchmark_138k | 0.2817 | 0.2366 | 0.3088 | 0.8660 | 0.0879 | 0.0799 | True | +| trainable | headline_full_benchmark | re2g_extended_features | logistic_re2g_extended_features_c0003 | strict_all | full_benchmark_138k | 0.2784 | 0.2366 | 0.3047 | 0.8776 | 0.0884 | 0.0804 | True | +| trainable | headline_full_benchmark | observed_hic_reabc | logistic_observed_hic_reabc_c00003 | strict_all | full_benchmark_138k | 0.2784 | 0.2338 | 0.3000 | 0.8830 | 0.0885 | 0.0806 | True | +| trainable | headline_full_benchmark | proxy_v2_rich_without_contact_field_tuned | proxy_v2_rich_without_contact_high_confidence_c0p01 | strict_all | full_benchmark_138k | 0.2734 | 0.2339 | 0.3019 | 0.8649 | 0.0869 | 0.0783 | True | +| trainable | headline_full_benchmark | field_leader | logistic_re2g_extended_highconf_c0003 | strict_all | full_benchmark_138k | 0.2730 | 0.2306 | 0.2975 | 0.8672 | 0.0878 | 0.0799 | True | +| trainable | headline_full_benchmark | proxy_v2 | logistic_counterfactual_proxy_v2_highconf_c0003 | strict_all | full_benchmark_138k | 0.2601 | 0.2180 | 0.2824 | 0.8647 | 0.0884 | 0.0808 | True | +| trainable | headline_full_benchmark | proxy_v2_rich | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | strict_all | full_benchmark_138k | 0.2594 | 0.2248 | 0.2909 | 0.8682 | 0.0873 | 0.0790 | True | +| trainable | headline_full_benchmark | proxy_v1 | logistic_counterfactual_proxy_highconf_c0003 | strict_all | full_benchmark_138k | 0.2256 | 0.1924 | 0.2521 | 0.8601 | 0.0875 | 0.0796 | True | +| trainable | headline_full_benchmark | distance_abc | logistic_distance_abc | strict_all | full_benchmark_138k | 0.1842 | 0.1527 | 0.2024 | 0.8511 | 0.0866 | 0.0781 | True | +| trainable | headline_full_benchmark | proxy_v2_rich_without_contact_field_tuned | proxy_v2_rich_without_contact_high_confidence_c0p01 | very_high_confidence | full_benchmark_138k | 0.7136 | 0.5814 | 0.7727 | 0.9842 | 0.0256 | 0.0252 | True | +| trainable | headline_full_benchmark | ensemble_proxy_residual_v1 | ensemble_proxy_residual_v1 | very_high_confidence | full_benchmark_138k | 0.7117 | 0.5867 | 0.7695 | 0.9803 | 0.0255 | 0.0249 | True | +| trainable | headline_full_benchmark | proxy_v2_rich | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | very_high_confidence | full_benchmark_138k | 0.6984 | 0.5645 | 0.7625 | 0.9831 | 0.0258 | 0.0255 | True | +| trainable | headline_full_benchmark | proxy_v2_rich_without_contact | s2t_proxy_v2_without_contact_logistic | very_high_confidence | full_benchmark_138k | 0.6924 | 0.5508 | 0.7464 | 0.9844 | 0.0256 | 0.0252 | True | +| trainable | headline_full_benchmark | residual_proxy_v2_rich | molecular_residual_proxy_v2_rich_highconf_c003 | very_high_confidence | full_benchmark_138k | 0.6751 | 0.5392 | 0.7317 | 0.9804 | 0.0256 | 0.0252 | True | +| trainable | headline_full_benchmark | residual_proxy_v2_rich_strict | molecular_residual_proxy_v2_rich_strict_broad_c001 | very_high_confidence | full_benchmark_138k | 0.6741 | 0.5416 | 0.7376 | 0.9773 | 0.0255 | 0.0249 | True | +| trainable | headline_full_benchmark | field_leader | logistic_re2g_extended_highconf_c0003 | very_high_confidence | full_benchmark_138k | 0.6708 | 0.5406 | 0.7307 | 0.9816 | 0.0256 | 0.0252 | True | +| trainable | headline_full_benchmark | residual_gate | residual_deepset_calibrated_gate_v1 | very_high_confidence | full_benchmark_138k | 0.6614 | 0.5348 | 0.7251 | 0.9776 | 0.0256 | 0.0252 | True | +| trainable | headline_full_benchmark | observed_hic_reabc | logistic_observed_hic_reabc_c00003 | very_high_confidence | full_benchmark_138k | 0.6440 | 0.5037 | 0.7074 | 0.9724 | 0.0255 | 0.0249 | True | +| trainable | headline_full_benchmark | re2g_extended_features | logistic_re2g_extended_features_c0003 | very_high_confidence | full_benchmark_138k | 0.6179 | 0.5028 | 0.7055 | 0.9727 | 0.0254 | 0.0249 | True | +| trainable | headline_full_benchmark | proxy_v2 | logistic_counterfactual_proxy_v2_highconf_c0003 | very_high_confidence | full_benchmark_138k | 0.6096 | 0.4687 | 0.6710 | 0.9816 | 0.0256 | 0.0252 | True | +| trainable | headline_full_benchmark | proxy_v1 | logistic_counterfactual_proxy_highconf_c0003 | very_high_confidence | full_benchmark_138k | 0.5192 | 0.3782 | 0.5887 | 0.9774 | 0.0256 | 0.0252 | True | +| trainable | headline_full_benchmark | distance_abc | logistic_distance_abc | very_high_confidence | full_benchmark_138k | 0.3723 | 0.2717 | 0.4553 | 0.9607 | 0.0252 | 0.0246 | True | + +## Unmatched Oracle-Panel Context + +> WARNING: The table below intentionally mixes evaluation universes for context. +> Trainable rows are scored on the full 138k-pair benchmark (low prevalence) while +> oracle rows are scored on positive-region panels (high prevalence), so AUPRCs +> must not be interpreted as a leaderboard. For the prevalence-matched, +> apples-to-apples comparison see `paper_matched_panel_comparison.csv` / `.md` +> and `paper_matched_panel_paired_diff.csv` produced by +> `scripts/build_matched_panel_comparison.py`. + +| result_type | comparison_scope | source_name | model_or_feature | scoreboard | evaluation_universe | auprc | ci_low | ci_high | auroc | mrr | recall_at_1 | terms_ok_for_training | +| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | +| no_training_oracle_all_positive | context_only_unmatched_oracle_panel | alphagenome_counterfactual | mask_abs_delta_atac_target_promoter_sum | field_compatible_e2g | oracle_panel_all_positive | 0.8282 | 0.7850 | 0.8599 | 0.9358 | 0.4789 | 0.4608 | False | +| no_training_oracle_top250 | context_only_unmatched_oracle_panel | alphagenome_counterfactual | mask_abs_delta_atac_target_promoter_sum | field_compatible_e2g | oracle_panel_top250 | 0.8724 | 0.8281 | 0.9104 | 0.9405 | 0.6440 | 0.6198 | False | +| trainable | headline_full_benchmark | ensemble_proxy_residual_v1 | ensemble_proxy_residual_v1 | field_compatible_e2g | full_benchmark_138k | 0.6515 | 0.5661 | 0.6866 | 0.9790 | 0.0612 | 0.0603 | True | +| trainable | headline_full_benchmark | proxy_v2_rich_without_contact_field_tuned | proxy_v2_rich_without_contact_high_confidence_c0p01 | field_compatible_e2g | full_benchmark_138k | 0.6440 | 0.5547 | 0.6778 | 0.9750 | 0.0613 | 0.0606 | True | +| trainable | headline_full_benchmark | proxy_v2_rich_without_contact | s2t_proxy_v2_without_contact_logistic | field_compatible_e2g | full_benchmark_138k | 0.6379 | 0.5414 | 0.6664 | 0.9741 | 0.0612 | 0.0603 | True | +| trainable | headline_full_benchmark | residual_proxy_v2_rich | molecular_residual_proxy_v2_rich_highconf_c003 | field_compatible_e2g | full_benchmark_138k | 0.6349 | 0.5590 | 0.6736 | 0.9768 | 0.0613 | 0.0605 | True | +| trainable | headline_full_benchmark | field_leader | logistic_re2g_extended_highconf_c0003 | field_compatible_e2g | full_benchmark_138k | 0.6286 | 0.5341 | 0.6553 | 0.9747 | 0.0612 | 0.0603 | True | +| trainable | headline_full_benchmark | residual_proxy_v2_rich_strict | molecular_residual_proxy_v2_rich_strict_broad_c001 | field_compatible_e2g | full_benchmark_138k | 0.6250 | 0.5470 | 0.6608 | 0.9761 | 0.0611 | 0.0603 | True | +| trainable | headline_full_benchmark | residual_gate | residual_deepset_calibrated_gate_v1 | field_compatible_e2g | full_benchmark_138k | 0.6163 | 0.5266 | 0.6481 | 0.9747 | 0.0611 | 0.0603 | True | +| trainable | headline_full_benchmark | proxy_v2_rich | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | field_compatible_e2g | full_benchmark_138k | 0.6125 | 0.5291 | 0.6570 | 0.9743 | 0.0612 | 0.0603 | True | +| trainable | headline_full_benchmark | re2g_extended_features | logistic_re2g_extended_features_c0003 | field_compatible_e2g | full_benchmark_138k | 0.6084 | 0.5184 | 0.6431 | 0.9761 | 0.0612 | 0.0603 | True | +| trainable | headline_full_benchmark | observed_hic_reabc | logistic_observed_hic_reabc_c00003 | field_compatible_e2g | full_benchmark_138k | 0.5951 | 0.5036 | 0.6294 | 0.9768 | 0.0613 | 0.0605 | True | +| trainable | headline_full_benchmark | proxy_v2 | logistic_counterfactual_proxy_v2_highconf_c0003 | field_compatible_e2g | full_benchmark_138k | 0.5730 | 0.4814 | 0.6018 | 0.9715 | 0.0609 | 0.0598 | True | +| trainable | headline_full_benchmark | proxy_v1 | logistic_counterfactual_proxy_highconf_c0003 | field_compatible_e2g | full_benchmark_138k | 0.4898 | 0.4202 | 0.5399 | 0.9636 | 0.0604 | 0.0592 | True | +| trainable | headline_full_benchmark | distance_abc | logistic_distance_abc | field_compatible_e2g | full_benchmark_138k | 0.3860 | 0.3147 | 0.4282 | 0.9501 | 0.0598 | 0.0578 | True | +| no_training_oracle_all_positive | context_only_unmatched_oracle_panel | alphagenome_counterfactual | mask_abs_delta_atac_target_promoter_sum | high_confidence | oracle_panel_all_positive | 0.8064 | 0.7629 | 0.8365 | 0.9201 | 0.4821 | 0.4602 | False | +| no_training_oracle_top250 | context_only_unmatched_oracle_panel | alphagenome_counterfactual | mask_abs_delta_atac_target_promoter_sum | high_confidence | oracle_panel_top250 | 0.8443 | 0.7997 | 0.8778 | 0.9156 | 0.6654 | 0.6322 | False | +| trainable | headline_full_benchmark | ensemble_proxy_residual_v1 | ensemble_proxy_residual_v1 | high_confidence | full_benchmark_138k | 0.6286 | 0.5443 | 0.6640 | 0.9742 | 0.0592 | 0.0581 | True | +| trainable | headline_full_benchmark | proxy_v2_rich_without_contact_field_tuned | proxy_v2_rich_without_contact_high_confidence_c0p01 | high_confidence | full_benchmark_138k | 0.6215 | 0.5333 | 0.6598 | 0.9705 | 0.0592 | 0.0581 | True | +| trainable | headline_full_benchmark | proxy_v2_rich_without_contact | s2t_proxy_v2_without_contact_logistic | high_confidence | full_benchmark_138k | 0.6163 | 0.5211 | 0.6444 | 0.9702 | 0.0591 | 0.0579 | True | +| trainable | headline_full_benchmark | residual_proxy_v2_rich | molecular_residual_proxy_v2_rich_highconf_c003 | high_confidence | full_benchmark_138k | 0.6121 | 0.5295 | 0.6500 | 0.9725 | 0.0592 | 0.0581 | True | +| trainable | headline_full_benchmark | field_leader | logistic_re2g_extended_highconf_c0003 | high_confidence | full_benchmark_138k | 0.6042 | 0.5052 | 0.6352 | 0.9694 | 0.0591 | 0.0577 | True | +| trainable | headline_full_benchmark | residual_proxy_v2_rich_strict | molecular_residual_proxy_v2_rich_strict_broad_c001 | high_confidence | full_benchmark_138k | 0.6022 | 0.5200 | 0.6393 | 0.9713 | 0.0592 | 0.0581 | True | +| trainable | headline_full_benchmark | proxy_v2_rich | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | high_confidence | full_benchmark_138k | 0.5936 | 0.5131 | 0.6351 | 0.9704 | 0.0592 | 0.0581 | True | +| trainable | headline_full_benchmark | residual_gate | residual_deepset_calibrated_gate_v1 | high_confidence | full_benchmark_138k | 0.5931 | 0.5050 | 0.6267 | 0.9701 | 0.0591 | 0.0581 | True | +| trainable | headline_full_benchmark | re2g_extended_features | logistic_re2g_extended_features_c0003 | high_confidence | full_benchmark_138k | 0.5846 | 0.4925 | 0.6212 | 0.9699 | 0.0591 | 0.0579 | True | +| trainable | headline_full_benchmark | observed_hic_reabc | logistic_observed_hic_reabc_c00003 | high_confidence | full_benchmark_138k | 0.5750 | 0.4818 | 0.6083 | 0.9712 | 0.0592 | 0.0581 | True | +| trainable | headline_full_benchmark | proxy_v2 | logistic_counterfactual_proxy_v2_highconf_c0003 | high_confidence | full_benchmark_138k | 0.5552 | 0.4622 | 0.5897 | 0.9686 | 0.0589 | 0.0575 | True | +| trainable | headline_full_benchmark | proxy_v1 | logistic_counterfactual_proxy_highconf_c0003 | high_confidence | full_benchmark_138k | 0.4762 | 0.4075 | 0.5253 | 0.9622 | 0.0587 | 0.0573 | True | +| trainable | headline_full_benchmark | distance_abc | logistic_distance_abc | high_confidence | full_benchmark_138k | 0.3672 | 0.3054 | 0.4129 | 0.9465 | 0.0580 | 0.0559 | True | +| no_training_oracle_all_positive | context_only_unmatched_oracle_panel | alphagenome_counterfactual | mask_abs_delta_atac_target_promoter_sum | strict_all | oracle_panel_all_positive | 0.5952 | 0.5534 | 0.6235 | 0.8268 | 0.7764 | 0.6852 | False | +| no_training_oracle_top250 | context_only_unmatched_oracle_panel | alphagenome_counterfactual | mask_abs_delta_atac_target_promoter_sum | strict_all | oracle_panel_top250 | 0.6438 | 0.5917 | 0.6878 | 0.8155 | 0.8155 | 0.7366 | False | +| trainable | headline_full_benchmark | ensemble_proxy_residual_v1 | ensemble_proxy_residual_v1 | strict_all | full_benchmark_138k | 0.2965 | 0.2543 | 0.3232 | 0.8816 | 0.0886 | 0.0806 | True | +| trainable | headline_full_benchmark | residual_proxy_v2_rich_strict | molecular_residual_proxy_v2_rich_strict_broad_c001 | strict_all | full_benchmark_138k | 0.2900 | 0.2416 | 0.3172 | 0.8831 | 0.0886 | 0.0805 | True | +| trainable | headline_full_benchmark | residual_proxy_v2_rich | molecular_residual_proxy_v2_rich_highconf_c003 | strict_all | full_benchmark_138k | 0.2879 | 0.2426 | 0.3165 | 0.8790 | 0.0886 | 0.0809 | True | +| trainable | headline_full_benchmark | residual_gate | residual_deepset_calibrated_gate_v1 | strict_all | full_benchmark_138k | 0.2849 | 0.2430 | 0.3101 | 0.8817 | 0.0887 | 0.0803 | True | +| trainable | headline_full_benchmark | proxy_v2_rich_without_contact | s2t_proxy_v2_without_contact_logistic | strict_all | full_benchmark_138k | 0.2817 | 0.2366 | 0.3088 | 0.8660 | 0.0879 | 0.0799 | True | +| trainable | headline_full_benchmark | re2g_extended_features | logistic_re2g_extended_features_c0003 | strict_all | full_benchmark_138k | 0.2784 | 0.2366 | 0.3047 | 0.8776 | 0.0884 | 0.0804 | True | +| trainable | headline_full_benchmark | observed_hic_reabc | logistic_observed_hic_reabc_c00003 | strict_all | full_benchmark_138k | 0.2784 | 0.2338 | 0.3000 | 0.8830 | 0.0885 | 0.0806 | True | +| trainable | headline_full_benchmark | proxy_v2_rich_without_contact_field_tuned | proxy_v2_rich_without_contact_high_confidence_c0p01 | strict_all | full_benchmark_138k | 0.2734 | 0.2339 | 0.3019 | 0.8649 | 0.0869 | 0.0783 | True | +| trainable | headline_full_benchmark | field_leader | logistic_re2g_extended_highconf_c0003 | strict_all | full_benchmark_138k | 0.2730 | 0.2306 | 0.2975 | 0.8672 | 0.0878 | 0.0799 | True | +| trainable | headline_full_benchmark | proxy_v2 | logistic_counterfactual_proxy_v2_highconf_c0003 | strict_all | full_benchmark_138k | 0.2601 | 0.2180 | 0.2824 | 0.8647 | 0.0884 | 0.0808 | True | +| trainable | headline_full_benchmark | proxy_v2_rich | logistic_counterfactual_proxy_v2_rich_highconf_c0003 | strict_all | full_benchmark_138k | 0.2594 | 0.2248 | 0.2909 | 0.8682 | 0.0873 | 0.0790 | True | +| trainable | headline_full_benchmark | proxy_v1 | logistic_counterfactual_proxy_highconf_c0003 | strict_all | full_benchmark_138k | 0.2256 | 0.1924 | 0.2521 | 0.8601 | 0.0875 | 0.0796 | True | +| trainable | headline_full_benchmark | distance_abc | logistic_distance_abc | strict_all | full_benchmark_138k | 0.1842 | 0.1527 | 0.2024 | 0.8511 | 0.0866 | 0.0781 | True | +| no_training_oracle_all_positive | context_only_unmatched_oracle_panel | alphagenome_counterfactual | mask_abs_delta_atac_target_promoter_sum | very_high_confidence | oracle_panel_all_positive | 0.8396 | 0.7555 | 0.8741 | 0.9296 | 0.2016 | 0.1947 | False | +| no_training_oracle_top250 | context_only_unmatched_oracle_panel | alphagenome_counterfactual | mask_abs_delta_atac_target_promoter_sum | very_high_confidence | oracle_panel_top250 | 0.8881 | 0.8171 | 0.9153 | 0.9222 | 0.4669 | 0.4510 | False | +| trainable | headline_full_benchmark | proxy_v2_rich_without_contact_field_tuned | proxy_v2_rich_without_contact_high_confidence_c0p01 | very_high_confidence | full_benchmark_138k | 0.7136 | 0.5814 | 0.7727 | 0.9842 | 0.0256 | 0.0252 | True | +| trainable | headline_full_benchmark | ensemble_proxy_residual_v1 | 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b/results/s2t/fulco2019_k562/generalization_summary.csv @@ -0,0 +1,4 @@ +model_name,recall_at_1,mrr,auroc,auprc,n_pairs,n_positive +distance,0.033374857161489406,0.04237318929184211,0.9536023169940855,0.33296299820095876,874.0,11.75 +nearest_gene,0.033374857161489406,0.03947871904101071,0.6603797528169529,0.03465768040345968,874.0,11.75 +logistic_molecular,0.033374857161489406,0.04237318929184211,0.9340546759325219,0.3177730070524895,874.0,11.75 diff --git a/results/s2t/fulco2019_k562/generalization_summary.md b/results/s2t/fulco2019_k562/generalization_summary.md new file mode 100644 index 0000000000000000000000000000000000000000..99f50c63ff8cd965fce94f185f4979f0594dd463 --- /dev/null +++ b/results/s2t/fulco2019_k562/generalization_summary.md @@ -0,0 +1,11 @@ +# External Screen Generalization + +Screen: `fulco2019_k562` (K562, hg38). + +Balanced chromosome-fold test means on an independent CRISPRi screen. + +| model | recall@1 | mrr | auroc | auprc | n_pairs | n_positive | +| --- | --- | --- | --- | --- | --- | --- | +| distance | 0.0334 | 0.0424 | 0.9536 | 0.3330 | 874 | 11 | +| logistic_molecular | 0.0334 | 0.0424 | 0.9341 | 0.3178 | 874 | 11 | +| nearest_gene | 0.0334 | 0.0395 | 0.6604 | 0.0347 | 874 | 11 | \ No newline at end of file diff --git a/results/s2t/fulco2019_k562/screen_deconfounding_comparison.csv b/results/s2t/fulco2019_k562/screen_deconfounding_comparison.csv new file mode 100644 index 0000000000000000000000000000000000000000..c451f50610bd2d6fecbe880dbec0c2f6bf6b4cf1 --- /dev/null +++ b/results/s2t/fulco2019_k562/screen_deconfounding_comparison.csv @@ -0,0 +1,7 @@ +screen,result_type,model_name,scoreboard,prevalence,auprc,auroc,ci_low,ci_high +fulco2019_k562,trained,distance,high_confidence,0.3325396825396825,1.0,1.0,0.6830511465016162,0.9591694329378029 +fulco2019_k562,no_training_oracle,alphagenome_counterfactual,high_confidence,0.3325396825396825,0.9888888888888889,0.9666666666666667,0.9426588696564335,1.0 +fulco2019_k562,trained,logistic_molecular,high_confidence,0.3325396825396825,0.9636363636363635,0.9629129129129129,0.6554842535190778,0.9623369565217389 +fulco2019_k562,trained,distance,strict_all,0.28989418920769033,0.7449140464539623,0.847368282402529,0.6111137043682091,0.7906228180373971 +fulco2019_k562,trained,logistic_molecular,strict_all,0.28989418920769033,0.722317886098427,0.8081133250311332,0.5422498939968319,0.7703685243771717 +fulco2019_k562,no_training_oracle,alphagenome_counterfactual,strict_all,0.28989418920769033,0.683940019765717,0.7570406115954061,0.581929575731334,0.8109071774457294 diff --git a/results/s2t/fulco2019_k562/screen_deconfounding_paired_diff.csv b/results/s2t/fulco2019_k562/screen_deconfounding_paired_diff.csv new file mode 100644 index 0000000000000000000000000000000000000000..9909d2ad6b3066ef4b19cb9c4390302be5c78c62 --- /dev/null +++ b/results/s2t/fulco2019_k562/screen_deconfounding_paired_diff.csv @@ -0,0 +1,3 @@ +scoreboard,n_pairs,n_regions,n_positive,auprc_a,auprc_b,diff,diff_mean,ci_low,ci_high,p_value,screen,best_trained +strict_all,244,42,49,0.6823153120463998,0.706445198388327,-0.024129886341927143,-0.017122676700150746,-0.11035846799231062,0.09679112609131646,0.69,fulco2019_k562,distance +high_confidence,121,40,18,0.9780900508351488,0.8511885574321075,0.12690149340304124,0.12620665829597338,0.013392770386731723,0.2963712871608318,0.02,fulco2019_k562,distance diff --git a/results/s2t/gasperini_gse120861/ensemble_proxy_residual_rank_slice_metrics.csv b/results/s2t/gasperini_gse120861/ensemble_proxy_residual_rank_slice_metrics.csv new file mode 100644 index 0000000000000000000000000000000000000000..8dcd528694850d74823f8f0f3634a64d4f9ec18e --- /dev/null +++ b/results/s2t/gasperini_gse120861/ensemble_proxy_residual_rank_slice_metrics.csv @@ -0,0 +1,1495 @@ +split_family,split,slice,n_regions,n_pairs,n_positive,metric,value,model_name,model_version,ensemble_objective,ensemble_tuning_source,weight__residual_strict,weight__field_proxy,weight__residual_gate,score_transform +chromosome,test,all_labeled,102,362,7,recall_at_1,0.0392156862745098,ensemble_proxy_residual_rank,0.1.0,all_labeled+0.2*field_compatible_e2g,same_split_family_validation,0.0,0.45,0.55,rank_percentile +chromosome,test,all_labeled,102,362,7,recall_at_3,0.06862745098039216,ensemble_proxy_residual_rank,0.1.0,all_labeled+0.2*field_compatible_e2g,same_split_family_validation,0.0,0.45,0.55,rank_percentile +chromosome,test,all_labeled,102,362,7,recall_at_5,0.06862745098039216,ensemble_proxy_residual_rank,0.1.0,all_labeled+0.2*field_compatible_e2g,same_split_family_validation,0.0,0.45,0.55,rank_percentile +chromosome,test,all_labeled,102,362,7,mrr,0.05392156862745098,ensemble_proxy_residual_rank,0.1.0,all_labeled+0.2*field_compatible_e2g,same_split_family_validation,0.0,0.45,0.55,rank_percentile +chromosome,test,all_labeled,102,362,7,auroc,0.6633802816901408,ensemble_proxy_residual_rank,0.1.0,all_labeled+0.2*field_compatible_e2g,same_split_family_validation,0.0,0.45,0.55,rank_percentile +chromosome,test,all_labeled,102,362,7,auprc,0.0644610384303879,ensemble_proxy_residual_rank,0.1.0,all_labeled+0.2*field_compatible_e2g,same_split_family_validation,0.0,0.45,0.55,rank_percentile +chromosome,test,positive_target_nearest,4,19,4,recall_at_1,1.0,ensemble_proxy_residual_rank,0.1.0,all_labeled+0.2*field_compatible_e2g,same_split_family_validation,0.0,0.45,0.55,rank_percentile +chromosome,test,positive_target_nearest,4,19,4,recall_at_3,1.0,ensemble_proxy_residual_rank,0.1.0,all_labeled+0.2*field_compatible_e2g,same_split_family_validation,0.0,0.45,0.55,rank_percentile 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b/results/s2t/gasperini_gse120861/learned_logistic_counterfactual_proxy_v2_rich_highconf_c0003_slice_metrics.csv new file mode 100644 index 0000000000000000000000000000000000000000..7507cac3bab63df34e8c0279b0850d8d6868a2f8 --- /dev/null +++ b/results/s2t/gasperini_gse120861/learned_logistic_counterfactual_proxy_v2_rich_highconf_c0003_slice_metrics.csv @@ -0,0 +1,1495 @@ +split_family,split,slice,n_regions,n_pairs,n_positive,metric,value,logistic_penalty,logistic_c,tuned,tune_metric,training_label_policy,n_fit_pairs,n_fit_positive,model_name,model_version +random,test,all_labeled,832,6103,96,recall_at_1,0.07692307692307693,l2,0.003,False,,high_confidence,13254,208,logistic_counterfactual_proxy_v2_rich_highconf_c0003,0.1.0 +random,test,all_labeled,832,6103,96,recall_at_3,0.0889423076923077,l2,0.003,False,,high_confidence,13254,208,logistic_counterfactual_proxy_v2_rich_highconf_c0003,0.1.0 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tune_metric model_name model_version + random test 832 6103 96 recall_at_1 0.074519 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test 832 6103 96 recall_at_3 0.087740 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test 832 6103 96 recall_at_5 0.090144 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test 832 6103 96 mrr 0.082030 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test 832 6103 96 auroc 0.876720 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test 832 6103 96 auprc 0.198268 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train 3886 28048 458 recall_at_1 0.075142 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train 3886 28048 458 recall_at_3 0.090582 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train 3886 28048 458 recall_at_5 0.093412 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train 3886 28048 458 mrr 0.084157 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train 3886 28048 458 auroc 0.892170 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train 3886 28048 458 auprc 0.207256 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val 827 6171 110 recall_at_1 0.094317 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val 827 6171 110 recall_at_3 0.108827 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val 827 6171 110 recall_at_5 0.118501 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val 827 6171 110 mrr 0.104676 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val 827 6171 110 auroc 0.861814 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val 827 6171 110 auprc 0.228048 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test 102 362 7 recall_at_1 0.039216 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test 102 362 7 recall_at_3 0.068627 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test 102 362 7 recall_at_5 0.068627 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test 102 362 7 mrr 0.053922 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test 102 362 7 auroc 0.923944 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test 102 362 7 auprc 0.176024 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train 5191 36929 618 recall_at_1 0.080331 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train 5191 36929 618 recall_at_3 0.093431 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train 5191 36929 618 recall_at_5 0.097669 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train 5191 36929 618 mrr 0.088136 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train 5191 36929 618 auroc 0.891377 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train 5191 36929 618 auprc 0.213951 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val 252 3031 39 recall_at_1 0.067460 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val 252 3031 39 recall_at_3 0.099206 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val 252 3031 39 recall_at_5 0.107143 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val 252 3031 39 mrr 0.086818 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val 252 3031 39 auroc 0.832116 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val 252 3031 39 auprc 0.187971 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test 1148 9006 131 recall_at_1 0.079268 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test 1148 9006 131 recall_at_3 0.098432 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test 1148 9006 131 recall_at_5 0.103659 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test 1148 9006 131 mrr 0.089923 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test 1148 9006 131 auroc 0.876647 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test 1148 9006 131 auprc 0.238933 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train 4397 31316 533 recall_at_1 0.078463 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train 4397 31316 533 recall_at_3 0.092563 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train 4397 31316 533 recall_at_5 0.095747 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train 4397 31316 533 mrr 0.086743 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train 4397 31316 533 auroc 0.889964 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train 4397 31316 533 auprc 0.200718 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test 1209 8301 134 recall_at_1 0.072787 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test 1209 8301 134 recall_at_3 0.085194 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test 1209 8301 134 recall_at_5 0.088503 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test 1209 8301 134 mrr 0.080878 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test 1209 8301 134 auroc 0.877623 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test 1209 8301 134 auprc 0.215359 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train 4336 32021 530 recall_at_1 0.081411 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train 4336 32021 530 recall_at_3 0.095480 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train 4336 32021 530 recall_at_5 0.098939 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train 4336 32021 530 mrr 0.089623 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train 4336 32021 530 auroc 0.885090 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train 4336 32021 530 auprc 0.217265 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test 961 6051 131 recall_at_1 0.093652 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test 961 6051 131 recall_at_3 0.105099 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test 961 6051 131 recall_at_5 0.111342 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test 961 6051 131 mrr 0.101010 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test 961 6051 131 auroc 0.870386 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test 961 6051 131 auprc 0.205526 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train 4584 34271 533 recall_at_1 0.075916 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train 4584 34271 533 recall_at_3 0.090314 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train 4584 34271 533 recall_at_5 0.094241 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train 4584 34271 533 mrr 0.084638 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train 4584 34271 533 auroc 0.891994 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train 4584 34271 533 auprc 0.210919 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test 1130 9403 135 recall_at_1 0.068142 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test 1130 9403 135 recall_at_3 0.081416 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test 1130 9403 135 recall_at_5 0.084956 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test 1130 9403 135 mrr 0.077239 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test 1130 9403 135 auroc 0.802443 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test 1130 9403 135 auprc 0.166020 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train 4415 30919 529 recall_at_1 0.081767 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train 4415 30919 529 recall_at_3 0.096036 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train 4415 30919 529 recall_at_5 0.100340 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train 4415 30919 529 mrr 0.089921 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train 4415 30919 529 auroc 0.902421 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train 4415 30919 529 auprc 0.219931 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test 1097 7561 133 recall_at_1 0.075661 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test 1097 7561 133 recall_at_3 0.092981 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test 1097 7561 133 recall_at_5 0.097539 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test 1097 7561 133 mrr 0.085428 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test 1097 7561 133 auroc 0.876356 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test 1097 7561 133 auprc 0.190343 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train 4448 32761 531 recall_at_1 0.079586 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train 4448 32761 531 recall_at_3 0.091951 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train 4448 32761 531 recall_at_5 0.097797 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train 4448 32761 531 mrr 0.087760 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train 4448 32761 531 auroc 0.889820 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train 4448 32761 531 auprc 0.213135 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test 122 1433 155 recall_at_1 0.631148 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test 122 1433 155 recall_at_3 0.811475 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test 122 1433 155 recall_at_5 0.868852 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test 122 1433 155 mrr 0.738591 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test 122 1433 155 auroc 0.828103 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test 122 1433 155 auprc 0.514728 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train 5351 38108 427 recall_at_1 0.055877 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train 5351 38108 427 recall_at_3 0.065969 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train 5351 38108 427 recall_at_5 0.069146 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train 5351 38108 427 mrr 0.061908 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train 5351 38108 427 auroc 0.897408 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train 5351 38108 427 auprc 0.156312 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val 72 781 82 recall_at_1 0.708333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val 72 781 82 recall_at_3 0.888889 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val 72 781 82 recall_at_5 0.916667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val 72 781 82 mrr 0.808828 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val 72 781 82 auroc 0.870896 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val 72 781 82 auprc 0.574985 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test 1205 9430 155 recall_at_1 0.063071 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test 1205 9430 155 recall_at_3 0.082158 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test 1205 9430 155 recall_at_5 0.087967 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test 1205 9430 155 mrr 0.074410 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test 1205 9430 155 auroc 0.816816 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test 1205 9430 155 auprc 0.145571 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train 3641 25911 427 recall_at_1 0.082670 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train 3641 25911 427 recall_at_3 0.096677 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train 3641 25911 427 recall_at_5 0.101620 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train 3641 25911 427 mrr 0.091202 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train 3641 25911 427 auroc 0.897389 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train 3641 25911 427 auprc 0.215727 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val 699 4981 82 recall_at_1 0.074392 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val 699 4981 82 recall_at_3 0.091559 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val 699 4981 82 recall_at_5 0.092990 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val 699 4981 82 mrr 0.083980 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val 699 4981 82 auroc 0.873108 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val 699 4981 82 auprc 0.177019 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test 819 5961 85 recall_at_1 0.070818 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test 819 5961 85 recall_at_3 0.080586 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test 819 5961 85 recall_at_5 0.085470 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test 819 5961 85 mrr 0.077434 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test 819 5961 85 auroc 0.869976 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test 819 5961 85 auprc 0.224227 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train 3913 28117 485 recall_at_1 0.081779 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train 3913 28117 485 recall_at_3 0.095834 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train 3913 28117 485 recall_at_5 0.099923 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train 3913 28117 485 mrr 0.089969 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train 3913 28117 485 auroc 0.883154 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train 3913 28117 485 auprc 0.212936 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val 813 6244 94 recall_at_1 0.079951 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val 813 6244 94 recall_at_3 0.093481 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val 813 6244 94 recall_at_5 0.097171 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val 813 6244 94 mrr 0.088502 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val 813 6244 94 auroc 0.912974 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val 813 6244 94 auprc 0.240559 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + +Slice metrics: + split_family split slice n_regions n_pairs n_positive metric value logistic_penalty logistic_c tuned tune_metric model_name model_version + random test all_labeled 832 6103 96 recall_at_1 0.074519 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test all_labeled 832 6103 96 recall_at_3 0.087740 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test all_labeled 832 6103 96 recall_at_5 0.090144 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test all_labeled 832 6103 96 mrr 0.082030 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test all_labeled 832 6103 96 auroc 0.876720 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test all_labeled 832 6103 96 auprc 0.198268 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test positive_target_nearest 53 499 63 recall_at_1 0.943396 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test positive_target_nearest 53 499 63 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test positive_target_nearest 53 499 63 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test positive_target_nearest 53 499 63 mrr 0.971698 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test positive_target_nearest 53 499 63 auroc 0.950961 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test positive_target_nearest 53 499 63 auprc 0.768883 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test positive_target_non_nearest 37 510 50 recall_at_1 0.486486 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test positive_target_non_nearest 37 510 50 recall_at_3 0.729730 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test positive_target_non_nearest 37 510 50 recall_at_5 0.783784 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test positive_target_non_nearest 37 510 50 mrr 0.628345 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test positive_target_non_nearest 37 510 50 auroc 0.753174 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test positive_target_non_nearest 37 510 50 auprc 0.375470 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test positive_target_nearest_only 46 392 46 recall_at_1 0.956522 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test positive_target_nearest_only 46 392 46 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test positive_target_nearest_only 46 392 46 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test positive_target_nearest_only 46 392 46 mrr 0.978261 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test positive_target_nearest_only 46 392 46 auroc 0.980460 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test positive_target_nearest_only 46 392 46 auprc 0.805266 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test positive_target_non_nearest_only 30 403 33 recall_at_1 0.400000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test positive_target_non_nearest_only 30 403 33 recall_at_3 0.666667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test positive_target_non_nearest_only 30 403 33 recall_at_5 0.733333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test positive_target_non_nearest_only 30 403 33 mrr 0.558292 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test positive_target_non_nearest_only 30 403 33 auroc 0.708763 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test positive_target_non_nearest_only 30 403 33 auprc 0.246063 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_0_10kb 26 326 27 recall_at_1 0.923077 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_0_10kb 26 326 27 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_0_10kb 26 326 27 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_0_10kb 26 326 27 mrr 0.961538 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_0_10kb 26 326 27 auroc 0.986498 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_0_10kb 26 326 27 auprc 0.835887 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_10_50kb 26 282 34 recall_at_1 0.884615 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_10_50kb 26 282 34 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_10_50kb 26 282 34 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_10_50kb 26 282 34 mrr 0.935897 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_10_50kb 26 282 34 auroc 0.915678 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_10_50kb 26 282 34 auprc 0.661184 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_50_100kb 19 120 24 recall_at_1 0.736842 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_50_100kb 19 120 24 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_50_100kb 19 120 24 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_50_100kb 19 120 24 mrr 0.850877 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_50_100kb 19 120 24 auroc 0.904948 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_50_100kb 19 120 24 auprc 0.697381 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_100_500kb 15 226 23 recall_at_1 0.333333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_100_500kb 15 226 23 recall_at_3 0.466667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_100_500kb 15 226 23 recall_at_5 0.600000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_100_500kb 15 226 23 mrr 0.469362 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_100_500kb 15 226 23 auroc 0.597987 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_100_500kb 15 226 23 auprc 0.222935 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_500kb_1mb 3 86 6 recall_at_1 0.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_500kb_1mb 3 86 6 recall_at_3 0.333333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_500kb_1mb 3 86 6 recall_at_5 0.333333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_500kb_1mb 3 86 6 mrr 0.236111 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_500kb_1mb 3 86 6 auroc 0.418750 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random test distance_500kb_1mb 3 86 6 auprc 0.139582 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train all_labeled 3886 28048 458 recall_at_1 0.075142 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train all_labeled 3886 28048 458 recall_at_3 0.090582 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train all_labeled 3886 28048 458 recall_at_5 0.093412 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train all_labeled 3886 28048 458 mrr 0.084157 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train all_labeled 3886 28048 458 auroc 0.892170 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train all_labeled 3886 28048 458 auprc 0.207256 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train positive_target_nearest 247 1858 279 recall_at_1 0.951417 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train positive_target_nearest 247 1858 279 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train positive_target_nearest 247 1858 279 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train positive_target_nearest 247 1858 279 mrr 0.975034 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train positive_target_nearest 247 1858 279 auroc 0.968575 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train positive_target_nearest 247 1858 279 auprc 0.859328 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train positive_target_non_nearest 191 2529 238 recall_at_1 0.424084 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train positive_target_non_nearest 191 2529 238 recall_at_3 0.691099 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train positive_target_non_nearest 191 2529 238 recall_at_5 0.748691 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train positive_target_non_nearest 191 2529 238 mrr 0.584815 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train positive_target_non_nearest 191 2529 238 auroc 0.771242 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train positive_target_non_nearest 191 2529 238 auprc 0.359397 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train positive_target_nearest_only 220 1544 220 recall_at_1 0.959091 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train positive_target_nearest_only 220 1544 220 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train positive_target_nearest_only 220 1544 220 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train positive_target_nearest_only 220 1544 220 mrr 0.978788 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train positive_target_nearest_only 220 1544 220 auroc 0.988403 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train positive_target_nearest_only 220 1544 220 auprc 0.907043 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train positive_target_non_nearest_only 164 2215 179 recall_at_1 0.347561 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train positive_target_non_nearest_only 164 2215 179 recall_at_3 0.640244 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train positive_target_non_nearest_only 164 2215 179 recall_at_5 0.707317 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train positive_target_non_nearest_only 164 2215 179 mrr 0.525608 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train positive_target_non_nearest_only 164 2215 179 auroc 0.735905 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train positive_target_non_nearest_only 164 2215 179 auprc 0.244069 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_0_10kb 95 966 105 recall_at_1 0.957895 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_0_10kb 95 966 105 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_0_10kb 95 966 105 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_0_10kb 95 966 105 mrr 0.977193 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_0_10kb 95 966 105 auroc 0.971163 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_0_10kb 95 966 105 auprc 0.867057 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_10_50kb 140 1194 162 recall_at_1 0.871429 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_10_50kb 140 1194 162 recall_at_3 0.992857 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_10_50kb 140 1194 162 recall_at_5 0.992857 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_10_50kb 140 1194 162 mrr 0.928401 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_10_50kb 140 1194 162 auroc 0.954021 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_10_50kb 140 1194 162 auprc 0.763125 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_50_100kb 60 465 74 recall_at_1 0.783333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_50_100kb 60 465 74 recall_at_3 0.950000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_50_100kb 60 465 74 recall_at_5 0.983333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_50_100kb 60 465 74 mrr 0.873203 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_50_100kb 60 465 74 auroc 0.925831 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_50_100kb 60 465 74 auprc 0.683951 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_100_500kb 95 1033 121 recall_at_1 0.515789 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_100_500kb 95 1033 121 recall_at_3 0.726316 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_100_500kb 95 1033 121 recall_at_5 0.778947 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_100_500kb 95 1033 121 mrr 0.639482 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_100_500kb 95 1033 121 auroc 0.780240 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_100_500kb 95 1033 121 auprc 0.445055 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_500kb_1mb 51 808 65 recall_at_1 0.117647 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_500kb_1mb 51 808 65 recall_at_3 0.411765 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_500kb_1mb 51 808 65 recall_at_5 0.490196 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_500kb_1mb 51 808 65 mrr 0.333605 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_500kb_1mb 51 808 65 auroc 0.578507 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random train distance_500kb_1mb 51 808 65 auprc 0.140179 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val all_labeled 827 6171 110 recall_at_1 0.094317 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val all_labeled 827 6171 110 recall_at_3 0.108827 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val all_labeled 827 6171 110 recall_at_5 0.118501 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val all_labeled 827 6171 110 mrr 0.104676 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val all_labeled 827 6171 110 auroc 0.861814 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val all_labeled 827 6171 110 auprc 0.228048 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val positive_target_nearest 61 469 65 recall_at_1 0.967213 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val positive_target_nearest 61 469 65 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val positive_target_nearest 61 469 65 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val positive_target_nearest 61 469 65 mrr 0.983607 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val positive_target_nearest 61 469 65 auroc 0.964014 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val positive_target_nearest 61 469 65 auprc 0.878275 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val positive_target_non_nearest 49 501 53 recall_at_1 0.469388 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val positive_target_non_nearest 49 501 53 recall_at_3 0.673469 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val positive_target_non_nearest 49 501 53 recall_at_5 0.836735 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val positive_target_non_nearest 49 501 53 mrr 0.623812 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val positive_target_non_nearest 49 501 53 auroc 0.731680 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val positive_target_non_nearest 49 501 53 auprc 0.315021 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val positive_target_nearest_only 57 433 57 recall_at_1 0.964912 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val positive_target_nearest_only 57 433 57 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val positive_target_nearest_only 57 433 57 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val positive_target_nearest_only 57 433 57 mrr 0.982456 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val positive_target_nearest_only 57 433 57 auroc 0.988615 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val positive_target_nearest_only 57 433 57 auprc 0.906785 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val positive_target_non_nearest_only 45 465 45 recall_at_1 0.422222 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val positive_target_non_nearest_only 45 465 45 recall_at_3 0.644444 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val positive_target_non_nearest_only 45 465 45 recall_at_5 0.822222 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val positive_target_non_nearest_only 45 465 45 mrr 0.590373 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val positive_target_non_nearest_only 45 465 45 auroc 0.725608 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val positive_target_non_nearest_only 45 465 45 auprc 0.278850 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_0_10kb 27 311 28 recall_at_1 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_0_10kb 27 311 28 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_0_10kb 27 311 28 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_0_10kb 27 311 28 mrr 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_0_10kb 27 311 28 auroc 0.995835 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_0_10kb 27 311 28 auprc 0.964377 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_10_50kb 26 169 27 recall_at_1 0.884615 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_10_50kb 26 169 27 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_10_50kb 26 169 27 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_10_50kb 26 169 27 mrr 0.935897 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_10_50kb 26 169 27 auroc 0.947053 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_10_50kb 26 169 27 auprc 0.708922 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_50_100kb 27 187 28 recall_at_1 0.814815 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_50_100kb 27 187 28 recall_at_3 0.962963 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_50_100kb 27 187 28 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_50_100kb 27 187 28 mrr 0.891975 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_50_100kb 27 187 28 auroc 0.874663 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_50_100kb 27 187 28 auprc 0.558202 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_100_500kb 16 141 18 recall_at_1 0.437500 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_100_500kb 16 141 18 recall_at_3 0.625000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_100_500kb 16 141 18 recall_at_5 0.812500 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_100_500kb 16 141 18 mrr 0.604167 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_100_500kb 16 141 18 auroc 0.761518 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_100_500kb 16 141 18 auprc 0.463686 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_500kb_1mb 12 146 13 recall_at_1 0.083333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_500kb_1mb 12 146 13 recall_at_3 0.250000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_500kb_1mb 12 146 13 recall_at_5 0.583333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_500kb_1mb 12 146 13 mrr 0.290289 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_500kb_1mb 12 146 13 auroc 0.488143 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + random val distance_500kb_1mb 12 146 13 auprc 0.102414 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test all_labeled 102 362 7 recall_at_1 0.039216 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test all_labeled 102 362 7 recall_at_3 0.068627 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test all_labeled 102 362 7 recall_at_5 0.068627 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test all_labeled 102 362 7 mrr 0.053922 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test all_labeled 102 362 7 auroc 0.923944 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test all_labeled 102 362 7 auprc 0.176024 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test positive_target_nearest 4 19 4 recall_at_1 0.750000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test positive_target_nearest 4 19 4 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test positive_target_nearest 4 19 4 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test positive_target_nearest 4 19 4 mrr 0.875000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test positive_target_nearest 4 19 4 auroc 0.966667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test positive_target_nearest 4 19 4 auprc 0.887500 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test positive_target_non_nearest 3 11 3 recall_at_1 0.333333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test positive_target_non_nearest 3 11 3 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test positive_target_non_nearest 3 11 3 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test positive_target_non_nearest 3 11 3 mrr 0.666667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test positive_target_non_nearest 3 11 3 auroc 0.583333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test positive_target_non_nearest 3 11 3 auprc 0.369444 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test positive_target_nearest_only 4 19 4 recall_at_1 0.750000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test positive_target_nearest_only 4 19 4 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test positive_target_nearest_only 4 19 4 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test positive_target_nearest_only 4 19 4 mrr 0.875000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test positive_target_nearest_only 4 19 4 auroc 0.966667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test positive_target_nearest_only 4 19 4 auprc 0.887500 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test positive_target_non_nearest_only 3 11 3 recall_at_1 0.333333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test positive_target_non_nearest_only 3 11 3 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test positive_target_non_nearest_only 3 11 3 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test positive_target_non_nearest_only 3 11 3 mrr 0.666667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test positive_target_non_nearest_only 3 11 3 auroc 0.583333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test positive_target_non_nearest_only 3 11 3 auprc 0.369444 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test distance_0_10kb 1 4 1 recall_at_1 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test distance_0_10kb 1 4 1 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test distance_0_10kb 1 4 1 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test distance_0_10kb 1 4 1 mrr 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test distance_0_10kb 1 4 1 auroc 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test distance_0_10kb 1 4 1 auprc 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test distance_10_50kb 2 5 2 recall_at_1 0.500000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test distance_10_50kb 2 5 2 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test distance_10_50kb 2 5 2 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test distance_10_50kb 2 5 2 mrr 0.750000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test distance_10_50kb 2 5 2 auroc 0.666667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test distance_10_50kb 2 5 2 auprc 0.583333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test distance_50_100kb 2 13 2 recall_at_1 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test distance_50_100kb 2 13 2 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test distance_50_100kb 2 13 2 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test distance_50_100kb 2 13 2 mrr 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test distance_50_100kb 2 13 2 auroc 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test distance_50_100kb 2 13 2 auprc 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test distance_100_500kb 2 8 2 recall_at_1 0.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test distance_100_500kb 2 8 2 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test distance_100_500kb 2 8 2 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test distance_100_500kb 2 8 2 mrr 0.500000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test distance_100_500kb 2 8 2 auroc 0.500000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome test distance_100_500kb 2 8 2 auprc 0.333333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train all_labeled 5191 36929 618 recall_at_1 0.080331 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train all_labeled 5191 36929 618 recall_at_3 0.093431 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train all_labeled 5191 36929 618 recall_at_5 0.097669 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train all_labeled 5191 36929 618 mrr 0.088136 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train all_labeled 5191 36929 618 auroc 0.891377 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train all_labeled 5191 36929 618 auprc 0.213951 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train positive_target_nearest 339 2572 382 recall_at_1 0.973451 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train positive_target_nearest 339 2572 382 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train positive_target_nearest 339 2572 382 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train positive_target_nearest 339 2572 382 mrr 0.986234 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train positive_target_nearest 339 2572 382 auroc 0.971608 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train positive_target_nearest 339 2572 382 auprc 0.883287 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train positive_target_non_nearest 256 3200 314 recall_at_1 0.464844 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train positive_target_non_nearest 256 3200 314 recall_at_3 0.707031 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train positive_target_non_nearest 256 3200 314 recall_at_5 0.792969 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train positive_target_non_nearest 256 3200 314 mrr 0.612042 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train positive_target_non_nearest 256 3200 314 auroc 0.770301 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train positive_target_non_nearest 256 3200 314 auprc 0.377718 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train positive_target_nearest_only 304 2161 304 recall_at_1 0.980263 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train positive_target_nearest_only 304 2161 304 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train positive_target_nearest_only 304 2161 304 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train positive_target_nearest_only 304 2161 304 mrr 0.989583 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train positive_target_nearest_only 304 2161 304 auroc 0.990082 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train positive_target_nearest_only 304 2161 304 auprc 0.927170 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train positive_target_non_nearest_only 221 2789 236 recall_at_1 0.393665 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train positive_target_non_nearest_only 221 2789 236 recall_at_3 0.660633 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train positive_target_non_nearest_only 221 2789 236 recall_at_5 0.760181 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train positive_target_non_nearest_only 221 2789 236 mrr 0.557387 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train positive_target_non_nearest_only 221 2789 236 auroc 0.738151 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train positive_target_non_nearest_only 221 2789 236 auprc 0.276002 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_0_10kb 138 1461 147 recall_at_1 0.971014 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_0_10kb 138 1461 147 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_0_10kb 138 1461 147 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_0_10kb 138 1461 147 mrr 0.984300 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_0_10kb 138 1461 147 auroc 0.981575 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_0_10kb 138 1461 147 auprc 0.910847 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_10_50kb 176 1451 204 recall_at_1 0.897727 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_10_50kb 176 1451 204 recall_at_3 0.988636 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_10_50kb 176 1451 204 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_10_50kb 176 1451 204 mrr 0.943845 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_10_50kb 176 1451 204 auroc 0.957561 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_10_50kb 176 1451 204 auprc 0.808910 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_50_100kb 101 717 121 recall_at_1 0.821782 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_50_100kb 101 717 121 recall_at_3 0.980198 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_50_100kb 101 717 121 recall_at_5 0.990099 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_50_100kb 101 717 121 mrr 0.895797 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_50_100kb 101 717 121 auroc 0.915650 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_50_100kb 101 717 121 auprc 0.659253 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_100_500kb 120 1340 154 recall_at_1 0.508333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_100_500kb 120 1340 154 recall_at_3 0.691667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_100_500kb 120 1340 154 recall_at_5 0.800000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_100_500kb 120 1340 154 mrr 0.631514 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_100_500kb 120 1340 154 auroc 0.774852 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_100_500kb 120 1340 154 auprc 0.422826 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_500kb_1mb 59 880 75 recall_at_1 0.135593 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_500kb_1mb 59 880 75 recall_at_3 0.406780 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_500kb_1mb 59 880 75 recall_at_5 0.525424 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_500kb_1mb 59 880 75 mrr 0.331505 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_500kb_1mb 59 880 75 auroc 0.518791 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome train distance_500kb_1mb 59 880 75 auprc 0.121517 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val all_labeled 252 3031 39 recall_at_1 0.067460 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val all_labeled 252 3031 39 recall_at_3 0.099206 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val all_labeled 252 3031 39 recall_at_5 0.107143 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val all_labeled 252 3031 39 mrr 0.086818 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val all_labeled 252 3031 39 auroc 0.832116 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val all_labeled 252 3031 39 auprc 0.187971 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val positive_target_nearest 18 235 21 recall_at_1 0.777778 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val positive_target_nearest 18 235 21 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val positive_target_nearest 18 235 21 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val positive_target_nearest 18 235 21 mrr 0.888889 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val positive_target_nearest 18 235 21 auroc 0.941923 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val positive_target_nearest 18 235 21 auprc 0.579541 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val positive_target_non_nearest 18 329 24 recall_at_1 0.277778 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val positive_target_non_nearest 18 329 24 recall_at_3 0.555556 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val positive_target_non_nearest 18 329 24 recall_at_5 0.666667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val positive_target_non_nearest 18 329 24 mrr 0.465450 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val positive_target_non_nearest 18 329 24 auroc 0.704645 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val positive_target_non_nearest 18 329 24 auprc 0.287757 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val positive_target_nearest_only 15 189 15 recall_at_1 0.800000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val positive_target_nearest_only 15 189 15 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val positive_target_nearest_only 15 189 15 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val positive_target_nearest_only 15 189 15 mrr 0.900000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val positive_target_nearest_only 15 189 15 auroc 0.979693 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val positive_target_nearest_only 15 189 15 auprc 0.663826 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val positive_target_non_nearest_only 15 283 18 recall_at_1 0.200000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val positive_target_non_nearest_only 15 283 18 recall_at_3 0.466667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val positive_target_non_nearest_only 15 283 18 recall_at_5 0.600000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val positive_target_non_nearest_only 15 283 18 mrr 0.391874 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val positive_target_non_nearest_only 15 283 18 auroc 0.655975 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val positive_target_non_nearest_only 15 283 18 auprc 0.195042 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_0_10kb 9 138 12 recall_at_1 0.888889 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_0_10kb 9 138 12 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_0_10kb 9 138 12 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_0_10kb 9 138 12 mrr 0.944444 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_0_10kb 9 138 12 auroc 0.933201 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_0_10kb 9 138 12 auprc 0.647970 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_10_50kb 14 189 17 recall_at_1 0.571429 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_10_50kb 14 189 17 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_10_50kb 14 189 17 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_10_50kb 14 189 17 mrr 0.773810 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_10_50kb 14 189 17 auroc 0.925103 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_10_50kb 14 189 17 auprc 0.435819 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_50_100kb 3 42 3 recall_at_1 0.666667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_50_100kb 3 42 3 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_50_100kb 3 42 3 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_50_100kb 3 42 3 mrr 0.833333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_50_100kb 3 42 3 auroc 0.991453 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_50_100kb 3 42 3 auprc 0.916667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_100_500kb 4 52 6 recall_at_1 0.250000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_100_500kb 4 52 6 recall_at_3 0.250000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_100_500kb 4 52 6 recall_at_5 0.500000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_100_500kb 4 52 6 mrr 0.383929 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_100_500kb 4 52 6 auroc 0.601449 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_100_500kb 4 52 6 auprc 0.302791 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_500kb_1mb 7 160 9 recall_at_1 0.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_500kb_1mb 7 160 9 recall_at_3 0.142857 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_500kb_1mb 7 160 9 recall_at_5 0.285714 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_500kb_1mb 7 160 9 mrr 0.164560 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_500kb_1mb 7 160 9 auroc 0.473878 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome val distance_500kb_1mb 7 160 9 auprc 0.116176 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test all_labeled 1148 9006 131 recall_at_1 0.079268 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test all_labeled 1148 9006 131 recall_at_3 0.098432 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test all_labeled 1148 9006 131 recall_at_5 0.103659 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test all_labeled 1148 9006 131 mrr 0.089923 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test all_labeled 1148 9006 131 auroc 0.876647 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test all_labeled 1148 9006 131 auprc 0.238933 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test positive_target_nearest 75 504 79 recall_at_1 0.973333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test positive_target_nearest 75 504 79 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test positive_target_nearest 75 504 79 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test positive_target_nearest 75 504 79 mrr 0.986667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test positive_target_nearest 75 504 79 auroc 0.973939 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test positive_target_nearest 75 504 79 auprc 0.911412 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test positive_target_non_nearest 56 685 60 recall_at_1 0.392857 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test positive_target_non_nearest 56 685 60 recall_at_3 0.750000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test positive_target_non_nearest 56 685 60 recall_at_5 0.857143 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test positive_target_non_nearest 56 685 60 mrr 0.593427 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test positive_target_non_nearest 56 685 60 auroc 0.735947 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test positive_target_non_nearest 56 685 60 auprc 0.333098 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test positive_target_nearest_only 71 466 71 recall_at_1 0.971831 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test positive_target_nearest_only 71 466 71 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test positive_target_nearest_only 71 466 71 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test positive_target_nearest_only 71 466 71 mrr 0.985915 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test positive_target_nearest_only 71 466 71 auroc 0.987770 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test positive_target_nearest_only 71 466 71 auprc 0.925892 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test positive_target_non_nearest_only 52 647 52 recall_at_1 0.346154 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test positive_target_non_nearest_only 52 647 52 recall_at_3 0.730769 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test positive_target_non_nearest_only 52 647 52 recall_at_5 0.846154 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test positive_target_non_nearest_only 52 647 52 mrr 0.562153 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test positive_target_non_nearest_only 52 647 52 auroc 0.719716 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test positive_target_non_nearest_only 52 647 52 auprc 0.285247 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_0_10kb 40 388 42 recall_at_1 0.975000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_0_10kb 40 388 42 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_0_10kb 40 388 42 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_0_10kb 40 388 42 mrr 0.987500 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_0_10kb 40 388 42 auroc 0.966075 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_0_10kb 40 388 42 auprc 0.875443 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_10_50kb 36 256 39 recall_at_1 0.861111 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_10_50kb 36 256 39 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_10_50kb 36 256 39 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_10_50kb 36 256 39 mrr 0.925926 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_10_50kb 36 256 39 auroc 0.962425 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_10_50kb 36 256 39 auprc 0.812332 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_50_100kb 20 169 21 recall_at_1 0.650000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_50_100kb 20 169 21 recall_at_3 0.950000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_50_100kb 20 169 21 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_50_100kb 20 169 21 mrr 0.804167 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_50_100kb 20 169 21 auroc 0.906692 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_50_100kb 20 169 21 auprc 0.585722 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_100_500kb 26 263 28 recall_at_1 0.423077 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_100_500kb 26 263 28 recall_at_3 0.692308 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_100_500kb 26 263 28 recall_at_5 0.807692 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_100_500kb 26 263 28 mrr 0.574855 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_100_500kb 26 263 28 auroc 0.723860 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_100_500kb 26 263 28 auprc 0.376903 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_500kb_1mb 9 113 9 recall_at_1 0.111111 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_500kb_1mb 9 113 9 recall_at_3 0.444444 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_500kb_1mb 9 113 9 recall_at_5 0.666667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_500kb_1mb 9 113 9 mrr 0.374339 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_500kb_1mb 9 113 9 auroc 0.472222 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 test distance_500kb_1mb 9 113 9 auprc 0.089798 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train all_labeled 4397 31316 533 recall_at_1 0.078463 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train all_labeled 4397 31316 533 recall_at_3 0.092563 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train all_labeled 4397 31316 533 recall_at_5 0.095747 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train all_labeled 4397 31316 533 mrr 0.086743 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train all_labeled 4397 31316 533 auroc 0.889964 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train all_labeled 4397 31316 533 auprc 0.200718 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train positive_target_nearest 286 2322 328 recall_at_1 0.972028 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train positive_target_nearest 286 2322 328 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train positive_target_nearest 286 2322 328 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train positive_target_nearest 286 2322 328 mrr 0.986014 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train positive_target_nearest 286 2322 328 auroc 0.968295 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train positive_target_nearest 286 2322 328 auprc 0.816287 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train positive_target_non_nearest 221 2855 281 recall_at_1 0.443439 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train positive_target_non_nearest 221 2855 281 recall_at_3 0.701357 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train positive_target_non_nearest 221 2855 281 recall_at_5 0.764706 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train positive_target_non_nearest 221 2855 281 mrr 0.596864 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train positive_target_non_nearest 221 2855 281 auroc 0.756604 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train positive_target_non_nearest 221 2855 281 auprc 0.337527 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train positive_target_nearest_only 252 1903 252 recall_at_1 0.980159 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train positive_target_nearest_only 252 1903 252 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train positive_target_nearest_only 252 1903 252 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train positive_target_nearest_only 252 1903 252 mrr 0.990079 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train positive_target_nearest_only 252 1903 252 auroc 0.987312 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train positive_target_nearest_only 252 1903 252 auprc 0.869502 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train positive_target_non_nearest_only 187 2436 205 recall_at_1 0.358289 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train positive_target_non_nearest_only 187 2436 205 recall_at_3 0.647059 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train positive_target_non_nearest_only 187 2436 205 recall_at_5 0.721925 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train positive_target_non_nearest_only 187 2436 205 mrr 0.531589 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train positive_target_non_nearest_only 187 2436 205 auroc 0.715704 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train positive_target_non_nearest_only 187 2436 205 auprc 0.234477 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_0_10kb 108 1215 118 recall_at_1 0.972222 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_0_10kb 108 1215 118 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_0_10kb 108 1215 118 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_0_10kb 108 1215 118 mrr 0.986111 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_0_10kb 108 1215 118 auroc 0.981653 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_0_10kb 108 1215 118 auprc 0.851396 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_10_50kb 156 1389 184 recall_at_1 0.884615 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_10_50kb 156 1389 184 recall_at_3 0.993590 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_10_50kb 156 1389 184 recall_at_5 0.993590 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_10_50kb 156 1389 184 mrr 0.936966 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_10_50kb 156 1389 184 auroc 0.952566 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_10_50kb 156 1389 184 auprc 0.716811 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_50_100kb 86 603 105 recall_at_1 0.825581 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_50_100kb 86 603 105 recall_at_3 0.976744 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_50_100kb 86 603 105 recall_at_5 0.988372 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_50_100kb 86 603 105 mrr 0.898784 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_50_100kb 86 603 105 auroc 0.910423 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_50_100kb 86 603 105 auprc 0.652323 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_100_500kb 100 1137 134 recall_at_1 0.500000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_100_500kb 100 1137 134 recall_at_3 0.740000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_100_500kb 100 1137 134 recall_at_5 0.770000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_100_500kb 100 1137 134 mrr 0.634431 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_100_500kb 100 1137 134 auroc 0.759632 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_100_500kb 100 1137 134 auprc 0.383309 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_500kb_1mb 57 927 75 recall_at_1 0.140351 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_500kb_1mb 57 927 75 recall_at_3 0.333333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_500kb_1mb 57 927 75 recall_at_5 0.508772 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_500kb_1mb 57 927 75 mrr 0.312898 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_500kb_1mb 57 927 75 auroc 0.531299 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_1 train distance_500kb_1mb 57 927 75 auprc 0.119411 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test all_labeled 1209 8301 134 recall_at_1 0.072787 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test all_labeled 1209 8301 134 recall_at_3 0.085194 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test all_labeled 1209 8301 134 recall_at_5 0.088503 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test all_labeled 1209 8301 134 mrr 0.080878 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test all_labeled 1209 8301 134 auroc 0.877623 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test all_labeled 1209 8301 134 auprc 0.215359 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test positive_target_nearest 81 600 88 recall_at_1 0.938272 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test positive_target_nearest 81 600 88 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test positive_target_nearest 81 600 88 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test positive_target_nearest 81 600 88 mrr 0.969136 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test positive_target_nearest 81 600 88 auroc 0.973344 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test positive_target_nearest 81 600 88 auprc 0.865340 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test positive_target_non_nearest 45 559 59 recall_at_1 0.400000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test positive_target_non_nearest 45 559 59 recall_at_3 0.622222 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test positive_target_non_nearest 45 559 59 recall_at_5 0.711111 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test positive_target_non_nearest 45 559 59 mrr 0.561815 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test positive_target_non_nearest 45 559 59 auroc 0.712305 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test positive_target_non_nearest 45 559 59 auprc 0.366815 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test positive_target_nearest_only 75 545 75 recall_at_1 0.933333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test positive_target_nearest_only 75 545 75 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test positive_target_nearest_only 75 545 75 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test positive_target_nearest_only 75 545 75 mrr 0.966667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test positive_target_nearest_only 75 545 75 auroc 0.984057 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test positive_target_nearest_only 75 545 75 auprc 0.880932 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test positive_target_non_nearest_only 39 504 46 recall_at_1 0.307692 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test positive_target_non_nearest_only 39 504 46 recall_at_3 0.564103 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test positive_target_non_nearest_only 39 504 46 recall_at_5 0.666667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test positive_target_non_nearest_only 39 504 46 mrr 0.494402 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test positive_target_non_nearest_only 39 504 46 auroc 0.660575 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test positive_target_non_nearest_only 39 504 46 auprc 0.265321 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_0_10kb 22 200 24 recall_at_1 0.909091 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_0_10kb 22 200 24 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_0_10kb 22 200 24 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_0_10kb 22 200 24 mrr 0.954545 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_0_10kb 22 200 24 auroc 0.985085 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_0_10kb 22 200 24 auprc 0.886388 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_10_50kb 45 403 48 recall_at_1 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_10_50kb 45 403 48 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_10_50kb 45 403 48 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_10_50kb 45 403 48 mrr 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_10_50kb 45 403 48 auroc 0.984566 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_10_50kb 45 403 48 auprc 0.914050 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_50_100kb 23 135 25 recall_at_1 0.695652 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_50_100kb 23 135 25 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_50_100kb 23 135 25 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_50_100kb 23 135 25 mrr 0.840580 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_50_100kb 23 135 25 auroc 0.889818 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_50_100kb 23 135 25 auprc 0.567677 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_100_500kb 26 286 37 recall_at_1 0.461538 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_100_500kb 26 286 37 recall_at_3 0.576923 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_100_500kb 26 286 37 recall_at_5 0.730769 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_100_500kb 26 286 37 mrr 0.584628 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_100_500kb 26 286 37 auroc 0.702920 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_100_500kb 26 286 37 auprc 0.476025 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_500kb_1mb 10 142 13 recall_at_1 0.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_500kb_1mb 10 142 13 recall_at_3 0.300000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_500kb_1mb 10 142 13 recall_at_5 0.400000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_500kb_1mb 10 142 13 mrr 0.249802 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_500kb_1mb 10 142 13 auroc 0.454979 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 test distance_500kb_1mb 10 142 13 auprc 0.084004 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train all_labeled 4336 32021 530 recall_at_1 0.081411 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train all_labeled 4336 32021 530 recall_at_3 0.095480 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train all_labeled 4336 32021 530 recall_at_5 0.098939 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train all_labeled 4336 32021 530 mrr 0.089623 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train all_labeled 4336 32021 530 auroc 0.885090 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train all_labeled 4336 32021 530 auprc 0.217265 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train positive_target_nearest 280 2226 319 recall_at_1 0.967857 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train positive_target_nearest 280 2226 319 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train positive_target_nearest 280 2226 319 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train positive_target_nearest 280 2226 319 mrr 0.983929 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train positive_target_nearest 280 2226 319 auroc 0.968765 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train positive_target_nearest 280 2226 319 auprc 0.852016 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train positive_target_non_nearest 232 2981 282 recall_at_1 0.474138 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train positive_target_non_nearest 232 2981 282 recall_at_3 0.715517 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train positive_target_non_nearest 232 2981 282 recall_at_5 0.780172 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train positive_target_non_nearest 232 2981 282 mrr 0.616843 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train positive_target_non_nearest 232 2981 282 auroc 0.768152 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train positive_target_non_nearest 232 2981 282 auprc 0.365597 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train positive_target_nearest_only 248 1824 248 recall_at_1 0.979839 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train positive_target_nearest_only 248 1824 248 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train positive_target_nearest_only 248 1824 248 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train positive_target_nearest_only 248 1824 248 mrr 0.989919 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train positive_target_nearest_only 248 1824 248 auroc 0.989799 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train positive_target_nearest_only 248 1824 248 auprc 0.905757 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train positive_target_non_nearest_only 200 2579 211 recall_at_1 0.410000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train positive_target_non_nearest_only 200 2579 211 recall_at_3 0.670000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train positive_target_non_nearest_only 200 2579 211 recall_at_5 0.745000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train positive_target_non_nearest_only 200 2579 211 mrr 0.565537 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train positive_target_non_nearest_only 200 2579 211 auroc 0.736118 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train positive_target_non_nearest_only 200 2579 211 auprc 0.273930 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_0_10kb 126 1403 136 recall_at_1 0.976190 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_0_10kb 126 1403 136 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_0_10kb 126 1403 136 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_0_10kb 126 1403 136 mrr 0.988095 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_0_10kb 126 1403 136 auroc 0.977227 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_0_10kb 126 1403 136 auprc 0.896405 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_10_50kb 147 1242 175 recall_at_1 0.850340 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_10_50kb 147 1242 175 recall_at_3 0.993197 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_10_50kb 147 1242 175 recall_at_5 0.993197 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_10_50kb 147 1242 175 mrr 0.918205 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_10_50kb 147 1242 175 auroc 0.943178 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_10_50kb 147 1242 175 auprc 0.707209 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_50_100kb 83 637 101 recall_at_1 0.831325 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_50_100kb 83 637 101 recall_at_3 0.975904 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_50_100kb 83 637 101 recall_at_5 0.987952 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_50_100kb 83 637 101 mrr 0.899398 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_50_100kb 83 637 101 auroc 0.928292 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_50_100kb 83 637 101 auprc 0.698748 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_100_500kb 100 1114 125 recall_at_1 0.500000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_100_500kb 100 1114 125 recall_at_3 0.720000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_100_500kb 100 1114 125 recall_at_5 0.810000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_100_500kb 100 1114 125 mrr 0.631831 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_100_500kb 100 1114 125 auroc 0.771470 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_100_500kb 100 1114 125 auprc 0.397796 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_500kb_1mb 56 898 71 recall_at_1 0.178571 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_500kb_1mb 56 898 71 recall_at_3 0.357143 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_500kb_1mb 56 898 71 recall_at_5 0.446429 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_500kb_1mb 56 898 71 mrr 0.335257 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_500kb_1mb 56 898 71 auroc 0.512867 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_2 train distance_500kb_1mb 56 898 71 auprc 0.117523 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test all_labeled 961 6051 131 recall_at_1 0.093652 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test all_labeled 961 6051 131 recall_at_3 0.105099 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test all_labeled 961 6051 131 recall_at_5 0.111342 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test all_labeled 961 6051 131 mrr 0.101010 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test all_labeled 961 6051 131 auroc 0.870386 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test all_labeled 961 6051 131 auprc 0.205526 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test positive_target_nearest 70 588 83 recall_at_1 0.957143 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test positive_target_nearest 70 588 83 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test positive_target_nearest 70 588 83 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test positive_target_nearest 70 588 83 mrr 0.978571 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test positive_target_nearest 70 588 83 auroc 0.948229 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test positive_target_nearest 70 588 83 auprc 0.800679 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test positive_target_non_nearest 56 596 71 recall_at_1 0.589286 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test positive_target_non_nearest 56 596 71 recall_at_3 0.732143 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test positive_target_non_nearest 56 596 71 recall_at_5 0.839286 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test positive_target_non_nearest 56 596 71 mrr 0.688761 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test positive_target_non_nearest 56 596 71 auroc 0.750315 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test positive_target_non_nearest 56 596 71 auprc 0.418069 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test positive_target_nearest_only 60 484 60 recall_at_1 0.950000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test positive_target_nearest_only 60 484 60 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test positive_target_nearest_only 60 484 60 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test positive_target_nearest_only 60 484 60 mrr 0.975000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test positive_target_nearest_only 60 484 60 auroc 0.982940 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test positive_target_nearest_only 60 484 60 auprc 0.846011 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test positive_target_non_nearest_only 46 492 48 recall_at_1 0.500000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test positive_target_non_nearest_only 46 492 48 recall_at_3 0.673913 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test positive_target_non_nearest_only 46 492 48 recall_at_5 0.804348 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test positive_target_non_nearest_only 46 492 48 mrr 0.621101 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test positive_target_non_nearest_only 46 492 48 auroc 0.720158 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test positive_target_non_nearest_only 46 492 48 auprc 0.302365 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_0_10kb 28 355 29 recall_at_1 0.964286 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_0_10kb 28 355 29 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_0_10kb 28 355 29 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_0_10kb 28 355 29 mrr 0.982143 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_0_10kb 28 355 29 auroc 0.980960 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_0_10kb 28 355 29 auprc 0.922179 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_10_50kb 27 190 32 recall_at_1 0.851852 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_10_50kb 27 190 32 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_10_50kb 27 190 32 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_10_50kb 27 190 32 mrr 0.925926 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_10_50kb 27 190 32 auroc 0.951147 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_10_50kb 27 190 32 auprc 0.737232 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_50_100kb 33 204 44 recall_at_1 0.969697 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_50_100kb 33 204 44 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_50_100kb 33 204 44 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_50_100kb 33 204 44 mrr 0.979798 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_50_100kb 33 204 44 auroc 0.905398 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_50_100kb 33 204 44 auprc 0.766586 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_100_500kb 21 185 30 recall_at_1 0.666667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_100_500kb 21 185 30 recall_at_3 0.857143 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_100_500kb 21 185 30 recall_at_5 0.904762 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_100_500kb 21 185 30 mrr 0.765794 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_100_500kb 21 185 30 auroc 0.807312 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_100_500kb 21 185 30 auprc 0.449033 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_500kb_1mb 16 251 21 recall_at_1 0.187500 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_500kb_1mb 16 251 21 recall_at_3 0.250000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_500kb_1mb 16 251 21 recall_at_5 0.562500 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_500kb_1mb 16 251 21 mrr 0.322227 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_500kb_1mb 16 251 21 auroc 0.457143 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 test distance_500kb_1mb 16 251 21 auprc 0.199209 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train all_labeled 4584 34271 533 recall_at_1 0.075916 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train all_labeled 4584 34271 533 recall_at_3 0.090314 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train all_labeled 4584 34271 533 recall_at_5 0.094241 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train all_labeled 4584 34271 533 mrr 0.084638 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train all_labeled 4584 34271 533 auroc 0.891994 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train all_labeled 4584 34271 533 auprc 0.210919 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train positive_target_nearest 291 2238 324 recall_at_1 0.969072 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train positive_target_nearest 291 2238 324 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train positive_target_nearest 291 2238 324 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train positive_target_nearest 291 2238 324 mrr 0.983963 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train positive_target_nearest 291 2238 324 auroc 0.971871 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train positive_target_nearest 291 2238 324 auprc 0.856190 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train positive_target_non_nearest 221 2944 270 recall_at_1 0.411765 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train positive_target_non_nearest 221 2944 270 recall_at_3 0.683258 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train positive_target_non_nearest 221 2944 270 recall_at_5 0.764706 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train positive_target_non_nearest 221 2944 270 mrr 0.579854 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train positive_target_non_nearest 221 2944 270 auroc 0.769780 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train positive_target_non_nearest 221 2944 270 auprc 0.340159 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train positive_target_nearest_only 263 1885 263 recall_at_1 0.977186 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train positive_target_nearest_only 263 1885 263 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train positive_target_nearest_only 263 1885 263 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train positive_target_nearest_only 263 1885 263 mrr 0.987959 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train positive_target_nearest_only 263 1885 263 auroc 0.989735 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train positive_target_nearest_only 263 1885 263 auprc 0.913337 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train positive_target_non_nearest_only 193 2591 209 recall_at_1 0.341969 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train positive_target_non_nearest_only 193 2591 209 recall_at_3 0.637306 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train positive_target_non_nearest_only 193 2591 209 recall_at_5 0.730570 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train positive_target_non_nearest_only 193 2591 209 mrr 0.526672 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train positive_target_non_nearest_only 193 2591 209 auroc 0.738901 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train positive_target_non_nearest_only 193 2591 209 auprc 0.256871 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_0_10kb 120 1248 131 recall_at_1 0.958333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_0_10kb 120 1248 131 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_0_10kb 120 1248 131 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_0_10kb 120 1248 131 mrr 0.977778 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_0_10kb 120 1248 131 auroc 0.975459 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_0_10kb 120 1248 131 auprc 0.870112 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_10_50kb 165 1455 191 recall_at_1 0.890909 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_10_50kb 165 1455 191 recall_at_3 0.987879 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_10_50kb 165 1455 191 recall_at_5 0.993939 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_10_50kb 165 1455 191 mrr 0.937576 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_10_50kb 165 1455 191 auroc 0.950017 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_10_50kb 165 1455 191 auprc 0.723389 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_50_100kb 73 568 82 recall_at_1 0.726027 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_50_100kb 73 568 82 recall_at_3 0.958904 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_50_100kb 73 568 82 recall_at_5 0.986301 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_50_100kb 73 568 82 mrr 0.843272 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_50_100kb 73 568 82 auroc 0.928862 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_50_100kb 73 568 82 auprc 0.638725 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_100_500kb 105 1215 132 recall_at_1 0.476190 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_100_500kb 105 1215 132 recall_at_3 0.657143 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_100_500kb 105 1215 132 recall_at_5 0.761905 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_100_500kb 105 1215 132 mrr 0.608101 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_100_500kb 105 1215 132 auroc 0.761066 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_100_500kb 105 1215 132 auprc 0.388806 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_500kb_1mb 50 789 63 recall_at_1 0.100000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_500kb_1mb 50 789 63 recall_at_3 0.380000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_500kb_1mb 50 789 63 recall_at_5 0.480000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_500kb_1mb 50 789 63 mrr 0.306432 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_500kb_1mb 50 789 63 auroc 0.526040 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_3 train distance_500kb_1mb 50 789 63 auprc 0.116174 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test all_labeled 1130 9403 135 recall_at_1 0.068142 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test all_labeled 1130 9403 135 recall_at_3 0.081416 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test all_labeled 1130 9403 135 recall_at_5 0.084956 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test all_labeled 1130 9403 135 mrr 0.077239 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test all_labeled 1130 9403 135 auroc 0.802443 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test all_labeled 1130 9403 135 auprc 0.166020 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test positive_target_nearest 66 582 75 recall_at_1 0.924242 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test positive_target_nearest 66 582 75 recall_at_3 0.984848 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test positive_target_nearest 66 582 75 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test positive_target_nearest 66 582 75 mrr 0.955808 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test positive_target_nearest 66 582 75 auroc 0.918632 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test positive_target_nearest 66 582 75 auprc 0.834318 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test positive_target_non_nearest 63 998 76 recall_at_1 0.333333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test positive_target_non_nearest 63 998 76 recall_at_3 0.539683 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test positive_target_non_nearest 63 998 76 recall_at_5 0.587302 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test positive_target_non_nearest 63 998 76 mrr 0.479321 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test positive_target_non_nearest 63 998 76 auroc 0.674478 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test positive_target_non_nearest 63 998 76 auprc 0.233067 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test positive_target_nearest_only 59 459 59 recall_at_1 0.949153 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test positive_target_nearest_only 59 459 59 recall_at_3 0.983051 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test positive_target_nearest_only 59 459 59 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test positive_target_nearest_only 59 459 59 mrr 0.967514 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test positive_target_nearest_only 59 459 59 auroc 0.961525 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test positive_target_nearest_only 59 459 59 auprc 0.931676 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test positive_target_non_nearest_only 56 875 60 recall_at_1 0.285714 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test positive_target_non_nearest_only 56 875 60 recall_at_3 0.482143 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test positive_target_non_nearest_only 56 875 60 recall_at_5 0.535714 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test positive_target_non_nearest_only 56 875 60 mrr 0.432094 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test positive_target_non_nearest_only 56 875 60 auroc 0.650634 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test positive_target_non_nearest_only 56 875 60 auprc 0.173484 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_0_10kb 33 401 35 recall_at_1 0.939394 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_0_10kb 33 401 35 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_0_10kb 33 401 35 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_0_10kb 33 401 35 mrr 0.969697 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_0_10kb 33 401 35 auroc 0.993365 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_0_10kb 33 401 35 auprc 0.941065 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_10_50kb 36 350 45 recall_at_1 0.777778 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_10_50kb 36 350 45 recall_at_3 0.944444 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_10_50kb 36 350 45 recall_at_5 0.972222 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_10_50kb 36 350 45 mrr 0.860258 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_10_50kb 36 350 45 auroc 0.842259 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_10_50kb 36 350 45 auprc 0.636390 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_50_100kb 10 101 10 recall_at_1 0.500000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_50_100kb 10 101 10 recall_at_3 0.900000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_50_100kb 10 101 10 recall_at_5 0.900000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_50_100kb 10 101 10 mrr 0.687500 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_50_100kb 10 101 10 auroc 0.794505 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_50_100kb 10 101 10 auprc 0.306355 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_100_500kb 30 444 38 recall_at_1 0.500000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_100_500kb 30 444 38 recall_at_3 0.566667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_100_500kb 30 444 38 recall_at_5 0.633333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_100_500kb 30 444 38 mrr 0.578213 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_100_500kb 30 444 38 auroc 0.721027 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_100_500kb 30 444 38 auprc 0.375287 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_500kb_1mb 21 338 28 recall_at_1 0.190476 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_500kb_1mb 21 338 28 recall_at_3 0.333333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_500kb_1mb 21 338 28 recall_at_5 0.380952 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_500kb_1mb 21 338 28 mrr 0.337614 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_500kb_1mb 21 338 28 auroc 0.490092 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 test distance_500kb_1mb 21 338 28 auprc 0.132344 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train all_labeled 4415 30919 529 recall_at_1 0.081767 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train all_labeled 4415 30919 529 recall_at_3 0.096036 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train all_labeled 4415 30919 529 recall_at_5 0.100340 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train all_labeled 4415 30919 529 mrr 0.089921 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train all_labeled 4415 30919 529 auroc 0.902421 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train all_labeled 4415 30919 529 auprc 0.219931 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train positive_target_nearest 295 2244 332 recall_at_1 0.969492 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train positive_target_nearest 295 2244 332 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train positive_target_nearest 295 2244 332 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train positive_target_nearest 295 2244 332 mrr 0.984181 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train positive_target_nearest 295 2244 332 auroc 0.970738 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train positive_target_nearest 295 2244 332 auprc 0.860563 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train positive_target_non_nearest 214 2542 265 recall_at_1 0.490654 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train positive_target_non_nearest 214 2542 265 recall_at_3 0.747664 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train positive_target_non_nearest 214 2542 265 recall_at_5 0.836449 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train positive_target_non_nearest 214 2542 265 mrr 0.640975 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train positive_target_non_nearest 214 2542 265 auroc 0.793132 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train positive_target_non_nearest 214 2542 265 auprc 0.396580 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train positive_target_nearest_only 264 1910 264 recall_at_1 0.969697 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train positive_target_nearest_only 264 1910 264 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train positive_target_nearest_only 264 1910 264 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train positive_target_nearest_only 264 1910 264 mrr 0.984217 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train positive_target_nearest_only 264 1910 264 auroc 0.988356 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train positive_target_nearest_only 264 1910 264 auprc 0.895839 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train positive_target_non_nearest_only 183 2208 197 recall_at_1 0.409836 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train positive_target_non_nearest_only 183 2208 197 recall_at_3 0.704918 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train positive_target_non_nearest_only 183 2208 197 recall_at_5 0.808743 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train positive_target_non_nearest_only 183 2208 197 mrr 0.582888 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train positive_target_non_nearest_only 183 2208 197 auroc 0.762587 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train positive_target_non_nearest_only 183 2208 197 auprc 0.285603 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_0_10kb 115 1202 125 recall_at_1 0.956522 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_0_10kb 115 1202 125 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_0_10kb 115 1202 125 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_0_10kb 115 1202 125 mrr 0.976812 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_0_10kb 115 1202 125 auroc 0.972695 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_0_10kb 115 1202 125 auprc 0.872629 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_10_50kb 156 1295 178 recall_at_1 0.903846 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_10_50kb 156 1295 178 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_10_50kb 156 1295 178 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_10_50kb 156 1295 178 mrr 0.948718 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_10_50kb 156 1295 178 auroc 0.965316 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_10_50kb 156 1295 178 auprc 0.770692 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_50_100kb 96 671 116 recall_at_1 0.843750 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_50_100kb 96 671 116 recall_at_3 0.989583 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_50_100kb 96 671 116 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_50_100kb 96 671 116 mrr 0.910590 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_50_100kb 96 671 116 auroc 0.936968 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_50_100kb 96 671 116 auprc 0.725547 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_100_500kb 96 956 124 recall_at_1 0.520833 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_100_500kb 96 956 124 recall_at_3 0.729167 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_100_500kb 96 956 124 recall_at_5 0.833333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_100_500kb 96 956 124 mrr 0.649745 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_100_500kb 96 956 124 auroc 0.778691 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_100_500kb 96 956 124 auprc 0.433132 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_500kb_1mb 45 702 56 recall_at_1 0.088889 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_500kb_1mb 45 702 56 recall_at_3 0.377778 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_500kb_1mb 45 702 56 recall_at_5 0.555556 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_500kb_1mb 45 702 56 mrr 0.304130 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_500kb_1mb 45 702 56 auroc 0.554262 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_4 train distance_500kb_1mb 45 702 56 auprc 0.136869 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test all_labeled 1097 7561 133 recall_at_1 0.075661 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test all_labeled 1097 7561 133 recall_at_3 0.092981 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test all_labeled 1097 7561 133 recall_at_5 0.097539 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test all_labeled 1097 7561 133 mrr 0.085428 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test all_labeled 1097 7561 133 auroc 0.876356 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test all_labeled 1097 7561 133 auprc 0.190343 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test positive_target_nearest 69 552 82 recall_at_1 0.956522 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test positive_target_nearest 69 552 82 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test positive_target_nearest 69 552 82 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test positive_target_nearest 69 552 82 mrr 0.978261 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test positive_target_nearest 69 552 82 auroc 0.961391 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test positive_target_nearest 69 552 82 auprc 0.781977 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test positive_target_non_nearest 57 702 75 recall_at_1 0.473684 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test positive_target_non_nearest 57 702 75 recall_at_3 0.771930 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test positive_target_non_nearest 57 702 75 recall_at_5 0.859649 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test positive_target_non_nearest 57 702 75 mrr 0.644123 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test positive_target_non_nearest 57 702 75 auroc 0.777352 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test positive_target_non_nearest 57 702 75 auprc 0.389613 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test positive_target_nearest_only 58 415 58 recall_at_1 0.965517 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test positive_target_nearest_only 58 415 58 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test positive_target_nearest_only 58 415 58 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test positive_target_nearest_only 58 415 58 mrr 0.982759 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test positive_target_nearest_only 58 415 58 auroc 0.981358 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test positive_target_nearest_only 58 415 58 auprc 0.828759 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test positive_target_non_nearest_only 46 565 51 recall_at_1 0.369565 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test positive_target_non_nearest_only 46 565 51 recall_at_3 0.717391 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test positive_target_non_nearest_only 46 565 51 recall_at_5 0.826087 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test positive_target_non_nearest_only 46 565 51 mrr 0.569892 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test positive_target_non_nearest_only 46 565 51 auroc 0.719730 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test positive_target_non_nearest_only 46 565 51 auprc 0.249769 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_0_10kb 25 259 30 recall_at_1 0.960000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_0_10kb 25 259 30 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_0_10kb 25 259 30 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_0_10kb 25 259 30 mrr 0.980000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_0_10kb 25 259 30 auroc 0.950218 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_0_10kb 25 259 30 auprc 0.787275 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_10_50kb 48 446 59 recall_at_1 0.791667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_10_50kb 48 446 59 recall_at_3 0.979167 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_10_50kb 48 446 59 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_10_50kb 48 446 59 mrr 0.886111 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_10_50kb 48 446 59 auroc 0.930539 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_10_50kb 48 446 59 auprc 0.623158 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_50_100kb 20 163 26 recall_at_1 0.900000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_50_100kb 20 163 26 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_50_100kb 20 163 26 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_50_100kb 20 163 26 mrr 0.941667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_50_100kb 20 163 26 auroc 0.963223 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_50_100kb 20 163 26 auprc 0.823555 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_100_500kb 23 222 29 recall_at_1 0.434783 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_100_500kb 23 222 29 recall_at_3 0.695652 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_100_500kb 23 222 29 recall_at_5 0.869565 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_100_500kb 23 222 29 mrr 0.603727 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_100_500kb 23 222 29 auroc 0.697695 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_100_500kb 23 222 29 auprc 0.403202 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_500kb_1mb 10 196 13 recall_at_1 0.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_500kb_1mb 10 196 13 recall_at_3 0.300000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_500kb_1mb 10 196 13 recall_at_5 0.400000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_500kb_1mb 10 196 13 mrr 0.224597 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_500kb_1mb 10 196 13 auroc 0.502312 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 test distance_500kb_1mb 10 196 13 auprc 0.127094 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train all_labeled 4448 32761 531 recall_at_1 0.079586 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train all_labeled 4448 32761 531 recall_at_3 0.091951 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train all_labeled 4448 32761 531 recall_at_5 0.097797 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train all_labeled 4448 32761 531 mrr 0.087760 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train all_labeled 4448 32761 531 auroc 0.889820 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train all_labeled 4448 32761 531 auprc 0.213135 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train positive_target_nearest 292 2274 325 recall_at_1 0.976027 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train positive_target_nearest 292 2274 325 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train positive_target_nearest 292 2274 325 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train positive_target_nearest 292 2274 325 mrr 0.988014 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train positive_target_nearest 292 2274 325 auroc 0.970705 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train positive_target_nearest 292 2274 325 auprc 0.880755 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train positive_target_non_nearest 220 2838 266 recall_at_1 0.427273 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train positive_target_non_nearest 220 2838 266 recall_at_3 0.654545 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train positive_target_non_nearest 220 2838 266 recall_at_5 0.772727 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train positive_target_non_nearest 220 2838 266 mrr 0.581164 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train positive_target_non_nearest 220 2838 266 auroc 0.767857 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train positive_target_non_nearest 220 2838 266 auprc 0.346978 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train positive_target_nearest_only 265 1954 265 recall_at_1 0.981132 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train positive_target_nearest_only 265 1954 265 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train positive_target_nearest_only 265 1954 265 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train positive_target_nearest_only 265 1954 265 mrr 0.990566 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train positive_target_nearest_only 265 1954 265 auroc 0.990440 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train positive_target_nearest_only 265 1954 265 auprc 0.925152 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train positive_target_non_nearest_only 193 2518 206 recall_at_1 0.357513 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train positive_target_non_nearest_only 193 2518 206 recall_at_3 0.606218 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train positive_target_non_nearest_only 193 2518 206 recall_at_5 0.740933 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train positive_target_non_nearest_only 193 2518 206 mrr 0.527751 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train positive_target_non_nearest_only 193 2518 206 auroc 0.745039 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train positive_target_non_nearest_only 193 2518 206 auprc 0.258319 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_0_10kb 123 1344 130 recall_at_1 0.959350 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_0_10kb 123 1344 130 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_0_10kb 123 1344 130 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_0_10kb 123 1344 130 mrr 0.979675 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_0_10kb 123 1344 130 auroc 0.983861 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_0_10kb 123 1344 130 auprc 0.905321 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_10_50kb 144 1199 164 recall_at_1 0.909722 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_10_50kb 144 1199 164 recall_at_3 0.993056 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_10_50kb 144 1199 164 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_10_50kb 144 1199 164 mrr 0.950810 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_10_50kb 144 1199 164 auroc 0.957476 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_10_50kb 144 1199 164 auprc 0.801659 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_50_100kb 86 609 100 recall_at_1 0.790698 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_50_100kb 86 609 100 recall_at_3 0.965116 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_50_100kb 86 609 100 recall_at_5 0.988372 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_50_100kb 86 609 100 mrr 0.878634 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_50_100kb 86 609 100 auroc 0.906601 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_50_100kb 86 609 100 auprc 0.634508 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_100_500kb 103 1178 133 recall_at_1 0.514563 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_100_500kb 103 1178 133 recall_at_3 0.660194 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_100_500kb 103 1178 133 recall_at_5 0.766990 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_100_500kb 103 1178 133 mrr 0.626309 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_100_500kb 103 1178 133 auroc 0.781653 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_100_500kb 103 1178 133 auprc 0.429961 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_500kb_1mb 56 844 71 recall_at_1 0.142857 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_500kb_1mb 56 844 71 recall_at_3 0.321429 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_500kb_1mb 56 844 71 recall_at_5 0.553571 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_500kb_1mb 56 844 71 mrr 0.323518 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_500kb_1mb 56 844 71 auroc 0.533626 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + chromosome_fold_5 train distance_500kb_1mb 56 844 71 auprc 0.126218 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test all_labeled 122 1433 155 recall_at_1 0.631148 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test all_labeled 122 1433 155 recall_at_3 0.811475 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test all_labeled 122 1433 155 recall_at_5 0.868852 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test all_labeled 122 1433 155 mrr 0.738591 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test all_labeled 122 1433 155 auroc 0.828103 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test all_labeled 122 1433 155 auprc 0.514728 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test positive_target_nearest 63 660 85 recall_at_1 0.888889 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test positive_target_nearest 63 660 85 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test positive_target_nearest 63 660 85 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test positive_target_nearest 63 660 85 mrr 0.941799 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test positive_target_nearest 63 660 85 auroc 0.918813 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test positive_target_nearest 63 660 85 auprc 0.760781 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test positive_target_non_nearest 75 975 108 recall_at_1 0.453333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test positive_target_non_nearest 75 975 108 recall_at_3 0.693333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test positive_target_non_nearest 75 975 108 recall_at_5 0.786667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test positive_target_non_nearest 75 975 108 mrr 0.601441 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test positive_target_non_nearest 75 975 108 auroc 0.758373 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test positive_target_non_nearest 75 975 108 auprc 0.378426 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test positive_target_nearest_only 47 458 47 recall_at_1 0.914894 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test positive_target_nearest_only 47 458 47 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test positive_target_nearest_only 47 458 47 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test positive_target_nearest_only 47 458 47 mrr 0.957447 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test positive_target_nearest_only 47 458 47 auroc 0.981985 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test positive_target_nearest_only 47 458 47 auprc 0.836215 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test positive_target_non_nearest_only 59 773 70 recall_at_1 0.355932 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test positive_target_non_nearest_only 59 773 70 recall_at_3 0.610169 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test positive_target_non_nearest_only 59 773 70 recall_at_5 0.728814 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test positive_target_non_nearest_only 59 773 70 mrr 0.521606 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test positive_target_non_nearest_only 59 773 70 auroc 0.714042 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test positive_target_non_nearest_only 59 773 70 auprc 0.246438 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_0_10kb 29 446 33 recall_at_1 0.862069 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_0_10kb 29 446 33 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_0_10kb 29 446 33 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_0_10kb 29 446 33 mrr 0.931034 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_0_10kb 29 446 33 auroc 0.956710 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_0_10kb 29 446 33 auprc 0.826156 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_10_50kb 37 389 54 recall_at_1 0.729730 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_10_50kb 37 389 54 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_10_50kb 37 389 54 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_10_50kb 37 389 54 mrr 0.855856 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_10_50kb 37 389 54 auroc 0.865616 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_10_50kb 37 389 54 auprc 0.601213 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_50_100kb 24 178 36 recall_at_1 0.916667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_50_100kb 24 178 36 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_50_100kb 24 178 36 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_50_100kb 24 178 36 mrr 0.951389 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_50_100kb 24 178 36 auroc 0.942097 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_50_100kb 24 178 36 auprc 0.808328 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_100_500kb 34 494 54 recall_at_1 0.411765 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_100_500kb 34 494 54 recall_at_3 0.558824 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_100_500kb 34 494 54 recall_at_5 0.676471 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_100_500kb 34 494 54 mrr 0.527057 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_100_500kb 34 494 54 auroc 0.727231 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_100_500kb 34 494 54 auprc 0.388787 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_500kb_1mb 16 196 27 recall_at_1 0.062500 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_500kb_1mb 16 196 27 recall_at_3 0.500000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_500kb_1mb 16 196 27 recall_at_5 0.687500 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_500kb_1mb 16 196 27 mrr 0.334675 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_500kb_1mb 16 196 27 auroc 0.530134 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout test distance_500kb_1mb 16 196 27 auprc 0.184011 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train all_labeled 5351 38108 427 recall_at_1 0.055877 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train all_labeled 5351 38108 427 recall_at_3 0.065969 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train all_labeled 5351 38108 427 recall_at_5 0.069146 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train all_labeled 5351 38108 427 mrr 0.061908 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train all_labeled 5351 38108 427 auroc 0.897408 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train all_labeled 5351 38108 427 auprc 0.156312 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train positive_target_nearest 255 1798 271 recall_at_1 0.976471 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train positive_target_nearest 255 1798 271 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train positive_target_nearest 255 1798 271 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train positive_target_nearest 255 1798 271 mrr 0.988235 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train positive_target_nearest 255 1798 271 auroc 0.984423 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train positive_target_nearest 255 1798 271 auprc 0.922210 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train positive_target_non_nearest 165 2071 186 recall_at_1 0.387879 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train positive_target_non_nearest 165 2071 186 recall_at_3 0.678788 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train positive_target_non_nearest 165 2071 186 recall_at_5 0.781818 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train positive_target_non_nearest 165 2071 186 mrr 0.565255 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train positive_target_non_nearest 165 2071 186 auroc 0.771176 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train positive_target_non_nearest 165 2071 186 auprc 0.311887 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train positive_target_nearest_only 241 1624 241 recall_at_1 0.975104 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train positive_target_nearest_only 241 1624 241 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train positive_target_nearest_only 241 1624 241 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train positive_target_nearest_only 241 1624 241 mrr 0.987552 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train positive_target_nearest_only 241 1624 241 auroc 0.991557 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train positive_target_nearest_only 241 1624 241 auprc 0.939023 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train positive_target_non_nearest_only 151 1897 156 recall_at_1 0.331126 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train positive_target_non_nearest_only 151 1897 156 recall_at_3 0.649007 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train positive_target_non_nearest_only 151 1897 156 recall_at_5 0.761589 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train positive_target_non_nearest_only 151 1897 156 mrr 0.524948 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train positive_target_non_nearest_only 151 1897 156 auroc 0.746896 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train positive_target_non_nearest_only 151 1897 156 auprc 0.244147 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_0_10kb 96 908 101 recall_at_1 0.989583 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_0_10kb 96 908 101 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_0_10kb 96 908 101 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_0_10kb 96 908 101 mrr 0.994792 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_0_10kb 96 908 101 auroc 0.990050 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_0_10kb 96 908 101 auprc 0.950240 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_10_50kb 137 1102 146 recall_at_1 0.897810 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_10_50kb 137 1102 146 recall_at_3 0.992701 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_10_50kb 137 1102 146 recall_at_5 0.992701 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_10_50kb 137 1102 146 mrr 0.944039 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_10_50kb 137 1102 146 auroc 0.976121 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_10_50kb 137 1102 146 auprc 0.812955 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_50_100kb 64 414 69 recall_at_1 0.734375 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_50_100kb 64 414 69 recall_at_3 0.968750 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_50_100kb 64 414 69 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_50_100kb 64 414 69 mrr 0.851562 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_50_100kb 64 414 69 auroc 0.936232 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_50_100kb 64 414 69 auprc 0.700224 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_100_500kb 79 727 92 recall_at_1 0.518987 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_100_500kb 79 727 92 recall_at_3 0.721519 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_100_500kb 79 727 92 recall_at_5 0.835443 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_100_500kb 79 727 92 mrr 0.652737 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_100_500kb 79 727 92 auroc 0.786135 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_100_500kb 79 727 92 auprc 0.472568 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_500kb_1mb 44 738 49 recall_at_1 0.113636 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_500kb_1mb 44 738 49 recall_at_3 0.340909 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_500kb_1mb 44 738 49 recall_at_5 0.477273 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_500kb_1mb 44 738 49 mrr 0.290404 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_500kb_1mb 44 738 49 auroc 0.532004 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout train distance_500kb_1mb 44 738 49 auprc 0.077190 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val all_labeled 72 781 82 recall_at_1 0.708333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val all_labeled 72 781 82 recall_at_3 0.888889 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val all_labeled 72 781 82 recall_at_5 0.916667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val all_labeled 72 781 82 mrr 0.808828 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val all_labeled 72 781 82 auroc 0.870896 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val all_labeled 72 781 82 auprc 0.574985 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val positive_target_nearest 43 368 51 recall_at_1 0.930233 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val positive_target_nearest 43 368 51 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val positive_target_nearest 43 368 51 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val positive_target_nearest 43 368 51 mrr 0.965116 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val positive_target_nearest 43 368 51 auroc 0.927630 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val positive_target_nearest 43 368 51 auprc 0.720852 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val positive_target_non_nearest 37 494 47 recall_at_1 0.486486 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val positive_target_non_nearest 37 494 47 recall_at_3 0.783784 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val positive_target_non_nearest 37 494 47 recall_at_5 0.837838 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val positive_target_non_nearest 37 494 47 mrr 0.655017 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val positive_target_non_nearest 37 494 47 auroc 0.799895 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val positive_target_non_nearest 37 494 47 auprc 0.405707 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val positive_target_nearest_only 35 287 35 recall_at_1 0.942857 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val positive_target_nearest_only 35 287 35 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val positive_target_nearest_only 35 287 35 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val positive_target_nearest_only 35 287 35 mrr 0.971429 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val positive_target_nearest_only 35 287 35 auroc 0.974830 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val positive_target_nearest_only 35 287 35 auprc 0.797121 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val positive_target_non_nearest_only 29 413 31 recall_at_1 0.379310 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val positive_target_non_nearest_only 29 413 31 recall_at_3 0.724138 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val positive_target_non_nearest_only 29 413 31 recall_at_5 0.793103 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val positive_target_non_nearest_only 29 413 31 mrr 0.577090 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val positive_target_non_nearest_only 29 413 31 auroc 0.783651 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val positive_target_non_nearest_only 29 413 31 auprc 0.326546 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_0_10kb 23 249 26 recall_at_1 0.869565 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_0_10kb 23 249 26 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_0_10kb 23 249 26 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_0_10kb 23 249 26 mrr 0.934783 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_0_10kb 23 249 26 auroc 0.927906 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_0_10kb 23 249 26 auprc 0.664811 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_10_50kb 18 154 23 recall_at_1 0.777778 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_10_50kb 18 154 23 recall_at_3 0.944444 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_10_50kb 18 154 23 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_10_50kb 18 154 23 mrr 0.875000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_10_50kb 18 154 23 auroc 0.948556 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_10_50kb 18 154 23 auprc 0.755797 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_50_100kb 18 180 21 recall_at_1 0.777778 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_50_100kb 18 180 21 recall_at_3 0.944444 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_50_100kb 18 180 21 recall_at_5 0.944444 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_50_100kb 18 180 21 mrr 0.863527 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_50_100kb 18 180 21 auroc 0.882899 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_50_100kb 18 180 21 auprc 0.521133 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_100_500kb 13 179 16 recall_at_1 0.461538 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_100_500kb 13 179 16 recall_at_3 0.692308 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_100_500kb 13 179 16 recall_at_5 0.769231 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_100_500kb 13 179 16 mrr 0.605012 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_100_500kb 13 179 16 auroc 0.710890 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_100_500kb 13 179 16 auprc 0.355066 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_500kb_1mb 6 106 8 recall_at_1 0.166667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_500kb_1mb 6 106 8 recall_at_3 0.500000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_500kb_1mb 6 106 8 recall_at_5 0.666667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_500kb_1mb 6 106 8 mrr 0.387831 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_500kb_1mb 6 106 8 auroc 0.642857 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout val distance_500kb_1mb 6 106 8 auprc 0.226136 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test all_labeled 1205 9430 155 recall_at_1 0.063071 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test all_labeled 1205 9430 155 recall_at_3 0.082158 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test all_labeled 1205 9430 155 recall_at_5 0.087967 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test all_labeled 1205 9430 155 mrr 0.074410 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test all_labeled 1205 9430 155 auroc 0.816816 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test all_labeled 1205 9430 155 auprc 0.145571 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test positive_target_nearest 63 660 85 recall_at_1 0.873016 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test positive_target_nearest 63 660 85 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test positive_target_nearest 63 660 85 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test positive_target_nearest 63 660 85 mrr 0.933862 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test positive_target_nearest 63 660 85 auroc 0.919673 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test positive_target_nearest 63 660 85 auprc 0.764958 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test positive_target_non_nearest 75 975 108 recall_at_1 0.453333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test positive_target_non_nearest 75 975 108 recall_at_3 0.693333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test positive_target_non_nearest 75 975 108 recall_at_5 0.786667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test positive_target_non_nearest 75 975 108 mrr 0.602195 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test positive_target_non_nearest 75 975 108 auroc 0.757764 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test positive_target_non_nearest 75 975 108 auprc 0.373533 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test positive_target_nearest_only 47 458 47 recall_at_1 0.893617 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test positive_target_nearest_only 47 458 47 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test positive_target_nearest_only 47 458 47 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test positive_target_nearest_only 47 458 47 mrr 0.946809 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test positive_target_nearest_only 47 458 47 auroc 0.982554 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test positive_target_nearest_only 47 458 47 auprc 0.839136 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test positive_target_non_nearest_only 59 773 70 recall_at_1 0.355932 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test positive_target_non_nearest_only 59 773 70 recall_at_3 0.610169 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test positive_target_non_nearest_only 59 773 70 recall_at_5 0.728814 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test positive_target_non_nearest_only 59 773 70 mrr 0.522565 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test positive_target_non_nearest_only 59 773 70 auroc 0.712579 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test positive_target_non_nearest_only 59 773 70 auprc 0.236189 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_0_10kb 29 446 33 recall_at_1 0.862069 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_0_10kb 29 446 33 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_0_10kb 29 446 33 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_0_10kb 29 446 33 mrr 0.931034 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_0_10kb 29 446 33 auroc 0.958544 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_0_10kb 29 446 33 auprc 0.828451 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_10_50kb 37 389 54 recall_at_1 0.702703 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_10_50kb 37 389 54 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_10_50kb 37 389 54 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_10_50kb 37 389 54 mrr 0.842342 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_10_50kb 37 389 54 auroc 0.864179 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_10_50kb 37 389 54 auprc 0.597184 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_50_100kb 24 178 36 recall_at_1 0.916667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_50_100kb 24 178 36 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_50_100kb 24 178 36 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_50_100kb 24 178 36 mrr 0.951389 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_50_100kb 24 178 36 auroc 0.939358 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_50_100kb 24 178 36 auprc 0.800068 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_100_500kb 34 494 54 recall_at_1 0.411765 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_100_500kb 34 494 54 recall_at_3 0.558824 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_100_500kb 34 494 54 recall_at_5 0.676471 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_100_500kb 34 494 54 mrr 0.528721 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_100_500kb 34 494 54 auroc 0.726347 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_100_500kb 34 494 54 auprc 0.385120 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_500kb_1mb 16 196 27 recall_at_1 0.062500 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_500kb_1mb 16 196 27 recall_at_3 0.500000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_500kb_1mb 16 196 27 recall_at_5 0.687500 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_500kb_1mb 16 196 27 mrr 0.334675 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_500kb_1mb 16 196 27 auroc 0.538023 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced test distance_500kb_1mb 16 196 27 auprc 0.188120 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train all_labeled 3641 25911 427 recall_at_1 0.082670 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train all_labeled 3641 25911 427 recall_at_3 0.096677 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train all_labeled 3641 25911 427 recall_at_5 0.101620 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train all_labeled 3641 25911 427 mrr 0.091202 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train all_labeled 3641 25911 427 auroc 0.897389 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train all_labeled 3641 25911 427 auprc 0.215727 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train positive_target_nearest 255 1798 271 recall_at_1 0.984314 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train positive_target_nearest 255 1798 271 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train positive_target_nearest 255 1798 271 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train positive_target_nearest 255 1798 271 mrr 0.992157 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train positive_target_nearest 255 1798 271 auroc 0.985344 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train positive_target_nearest 255 1798 271 auprc 0.926903 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train positive_target_non_nearest 165 2071 186 recall_at_1 0.387879 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train positive_target_non_nearest 165 2071 186 recall_at_3 0.672727 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train positive_target_non_nearest 165 2071 186 recall_at_5 0.781818 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train positive_target_non_nearest 165 2071 186 mrr 0.564031 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train positive_target_non_nearest 165 2071 186 auroc 0.772408 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train positive_target_non_nearest 165 2071 186 auprc 0.312284 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train positive_target_nearest_only 241 1624 241 recall_at_1 0.983402 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train positive_target_nearest_only 241 1624 241 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train positive_target_nearest_only 241 1624 241 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train positive_target_nearest_only 241 1624 241 mrr 0.991701 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train positive_target_nearest_only 241 1624 241 auroc 0.992163 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train positive_target_nearest_only 241 1624 241 auprc 0.943498 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train positive_target_non_nearest_only 151 1897 156 recall_at_1 0.331126 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train positive_target_non_nearest_only 151 1897 156 recall_at_3 0.642384 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train positive_target_non_nearest_only 151 1897 156 recall_at_5 0.761589 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train positive_target_non_nearest_only 151 1897 156 mrr 0.523610 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train positive_target_non_nearest_only 151 1897 156 auroc 0.747544 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train positive_target_non_nearest_only 151 1897 156 auprc 0.244710 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_0_10kb 96 908 101 recall_at_1 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_0_10kb 96 908 101 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_0_10kb 96 908 101 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_0_10kb 96 908 101 mrr 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_0_10kb 96 908 101 auroc 0.990320 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_0_10kb 96 908 101 auprc 0.949809 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_10_50kb 137 1102 146 recall_at_1 0.905109 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_10_50kb 137 1102 146 recall_at_3 0.992701 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_10_50kb 137 1102 146 recall_at_5 0.992701 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_10_50kb 137 1102 146 mrr 0.947689 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_10_50kb 137 1102 146 auroc 0.976307 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_10_50kb 137 1102 146 auprc 0.813628 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_50_100kb 64 414 69 recall_at_1 0.734375 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_50_100kb 64 414 69 recall_at_3 0.968750 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_50_100kb 64 414 69 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_50_100kb 64 414 69 mrr 0.851562 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_50_100kb 64 414 69 auroc 0.937996 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_50_100kb 64 414 69 auprc 0.712427 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_100_500kb 79 727 92 recall_at_1 0.518987 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_100_500kb 79 727 92 recall_at_3 0.708861 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_100_500kb 79 727 92 recall_at_5 0.835443 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_100_500kb 79 727 92 mrr 0.649468 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_100_500kb 79 727 92 auroc 0.786443 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_100_500kb 79 727 92 auprc 0.472625 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_500kb_1mb 44 738 49 recall_at_1 0.113636 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_500kb_1mb 44 738 49 recall_at_3 0.340909 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_500kb_1mb 44 738 49 recall_at_5 0.477273 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_500kb_1mb 44 738 49 mrr 0.291556 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_500kb_1mb 44 738 49 auroc 0.531738 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced train distance_500kb_1mb 44 738 49 auprc 0.077439 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val all_labeled 699 4981 82 recall_at_1 0.074392 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val all_labeled 699 4981 82 recall_at_3 0.091559 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val all_labeled 699 4981 82 recall_at_5 0.092990 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val all_labeled 699 4981 82 mrr 0.083980 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val all_labeled 699 4981 82 auroc 0.873108 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val all_labeled 699 4981 82 auprc 0.177019 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val positive_target_nearest 43 368 51 recall_at_1 0.953488 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val positive_target_nearest 43 368 51 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val positive_target_nearest 43 368 51 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val positive_target_nearest 43 368 51 mrr 0.976744 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val positive_target_nearest 43 368 51 auroc 0.929053 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val positive_target_nearest 43 368 51 auprc 0.729485 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val positive_target_non_nearest 37 494 47 recall_at_1 0.513514 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val positive_target_non_nearest 37 494 47 recall_at_3 0.783784 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val positive_target_non_nearest 37 494 47 recall_at_5 0.810811 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val positive_target_non_nearest 37 494 47 mrr 0.667629 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val positive_target_non_nearest 37 494 47 auroc 0.796611 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val positive_target_non_nearest 37 494 47 auprc 0.409760 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val positive_target_nearest_only 35 287 35 recall_at_1 0.942857 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val positive_target_nearest_only 35 287 35 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val positive_target_nearest_only 35 287 35 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val positive_target_nearest_only 35 287 35 mrr 0.971429 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val positive_target_nearest_only 35 287 35 auroc 0.976984 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val positive_target_nearest_only 35 287 35 auprc 0.808564 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val positive_target_non_nearest_only 29 413 31 recall_at_1 0.379310 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val positive_target_non_nearest_only 29 413 31 recall_at_3 0.724138 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val positive_target_non_nearest_only 29 413 31 recall_at_5 0.758621 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val positive_target_non_nearest_only 29 413 31 mrr 0.575941 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val positive_target_non_nearest_only 29 413 31 auroc 0.778247 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val positive_target_non_nearest_only 29 413 31 auprc 0.322966 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_0_10kb 23 249 26 recall_at_1 0.913043 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_0_10kb 23 249 26 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_0_10kb 23 249 26 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_0_10kb 23 249 26 mrr 0.956522 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_0_10kb 23 249 26 auroc 0.928941 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_0_10kb 23 249 26 auprc 0.667512 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_10_50kb 18 154 23 recall_at_1 0.777778 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_10_50kb 18 154 23 recall_at_3 0.944444 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_10_50kb 18 154 23 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_10_50kb 18 154 23 mrr 0.875000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_10_50kb 18 154 23 auroc 0.945901 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_10_50kb 18 154 23 auprc 0.754888 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_50_100kb 18 180 21 recall_at_1 0.777778 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_50_100kb 18 180 21 recall_at_3 0.944444 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_50_100kb 18 180 21 recall_at_5 0.944444 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_50_100kb 18 180 21 mrr 0.863527 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_50_100kb 18 180 21 auroc 0.884696 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_50_100kb 18 180 21 auprc 0.536254 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_100_500kb 13 179 16 recall_at_1 0.461538 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_100_500kb 13 179 16 recall_at_3 0.692308 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_100_500kb 13 179 16 recall_at_5 0.769231 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_100_500kb 13 179 16 mrr 0.605012 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_100_500kb 13 179 16 auroc 0.703988 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_100_500kb 13 179 16 auprc 0.351743 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_500kb_1mb 6 106 8 recall_at_1 0.333333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_500kb_1mb 6 106 8 recall_at_3 0.500000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_500kb_1mb 6 106 8 recall_at_5 0.500000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_500kb_1mb 6 106 8 mrr 0.465608 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_500kb_1mb 6 106 8 auroc 0.640306 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 + gene_holdout_rebalanced val distance_500kb_1mb 6 106 8 auprc 0.287538 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test all_labeled 819 5961 85 recall_at_1 0.070818 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test all_labeled 819 5961 85 recall_at_3 0.080586 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test all_labeled 819 5961 85 recall_at_5 0.085470 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test all_labeled 819 5961 85 mrr 0.077434 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test all_labeled 819 5961 85 auroc 0.869976 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test all_labeled 819 5961 85 auprc 0.224227 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test positive_target_nearest 50 417 58 recall_at_1 0.960000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test positive_target_nearest 50 417 58 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test positive_target_nearest 50 417 58 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test positive_target_nearest 50 417 58 mrr 0.980000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test positive_target_nearest 50 417 58 auroc 0.928537 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test positive_target_nearest 50 417 58 auprc 0.827840 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test positive_target_non_nearest 32 550 41 recall_at_1 0.500000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test positive_target_non_nearest 32 550 41 recall_at_3 0.687500 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test positive_target_non_nearest 32 550 41 recall_at_5 0.812500 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test positive_target_non_nearest 32 550 41 mrr 0.638078 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test positive_target_non_nearest 32 550 41 auroc 0.742920 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test positive_target_non_nearest 32 550 41 auprc 0.350683 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test positive_target_nearest_only 44 290 44 recall_at_1 0.954545 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test positive_target_nearest_only 44 290 44 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test positive_target_nearest_only 44 290 44 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test positive_target_nearest_only 44 290 44 mrr 0.977273 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test positive_target_nearest_only 44 290 44 auroc 0.980322 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test positive_target_nearest_only 44 290 44 auprc 0.920946 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test positive_target_non_nearest_only 26 423 27 recall_at_1 0.384615 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test positive_target_non_nearest_only 26 423 27 recall_at_3 0.615385 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test positive_target_non_nearest_only 26 423 27 recall_at_5 0.769231 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test positive_target_non_nearest_only 26 423 27 mrr 0.554558 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test positive_target_non_nearest_only 26 423 27 auroc 0.733446 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test positive_target_non_nearest_only 26 423 27 auprc 0.283636 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_0_10kb 20 203 24 recall_at_1 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_0_10kb 20 203 24 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_0_10kb 20 203 24 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_0_10kb 20 203 24 mrr 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_0_10kb 20 203 24 auroc 0.951816 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_0_10kb 20 203 24 auprc 0.876645 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_10_50kb 30 342 35 recall_at_1 0.900000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_10_50kb 30 342 35 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_10_50kb 30 342 35 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_10_50kb 30 342 35 mrr 0.950000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_10_50kb 30 342 35 auroc 0.915403 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_10_50kb 30 342 35 auprc 0.702241 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_50_100kb 9 44 9 recall_at_1 0.777778 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_50_100kb 9 44 9 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_50_100kb 9 44 9 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_50_100kb 9 44 9 mrr 0.888889 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_50_100kb 9 44 9 auroc 0.841270 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_50_100kb 9 44 9 auprc 0.595917 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_100_500kb 14 178 20 recall_at_1 0.571429 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_100_500kb 14 178 20 recall_at_3 0.785714 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_100_500kb 14 178 20 recall_at_5 0.928571 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_100_500kb 14 178 20 mrr 0.720238 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_100_500kb 14 178 20 auroc 0.745886 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_100_500kb 14 178 20 auprc 0.415407 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_500kb_1mb 9 238 13 recall_at_1 0.222222 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_500kb_1mb 9 238 13 recall_at_3 0.222222 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_500kb_1mb 9 238 13 recall_at_5 0.444444 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_500kb_1mb 9 238 13 mrr 0.315019 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_500kb_1mb 9 238 13 auroc 0.484103 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout test distance_500kb_1mb 9 238 13 auprc 0.174049 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train all_labeled 3913 28117 485 recall_at_1 0.081779 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train all_labeled 3913 28117 485 recall_at_3 0.095834 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train all_labeled 3913 28117 485 recall_at_5 0.099923 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train all_labeled 3913 28117 485 mrr 0.089969 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train all_labeled 3913 28117 485 auroc 0.883154 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train all_labeled 3913 28117 485 auprc 0.212936 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train positive_target_nearest 254 1883 287 recall_at_1 0.964567 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train positive_target_nearest 254 1883 287 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train positive_target_nearest 254 1883 287 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train positive_target_nearest 254 1883 287 mrr 0.982283 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train positive_target_nearest 254 1883 287 auroc 0.970274 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train positive_target_nearest 254 1883 287 auprc 0.865945 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train positive_target_non_nearest 212 2611 259 recall_at_1 0.466981 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train positive_target_non_nearest 212 2611 259 recall_at_3 0.702830 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train positive_target_non_nearest 212 2611 259 recall_at_5 0.778302 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train positive_target_non_nearest 212 2611 259 mrr 0.606367 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train positive_target_non_nearest 212 2611 259 auroc 0.762926 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train positive_target_non_nearest 212 2611 259 auprc 0.357854 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train positive_target_nearest_only 226 1583 226 recall_at_1 0.977876 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train positive_target_nearest_only 226 1583 226 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train positive_target_nearest_only 226 1583 226 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train positive_target_nearest_only 226 1583 226 mrr 0.988938 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train positive_target_nearest_only 226 1583 226 auroc 0.989781 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train positive_target_nearest_only 226 1583 226 auprc 0.914451 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train positive_target_non_nearest_only 184 2311 198 recall_at_1 0.407609 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train positive_target_non_nearest_only 184 2311 198 recall_at_3 0.657609 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train positive_target_non_nearest_only 184 2311 198 recall_at_5 0.744565 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train positive_target_non_nearest_only 184 2311 198 mrr 0.557336 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train positive_target_non_nearest_only 184 2311 198 auroc 0.727366 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train positive_target_non_nearest_only 184 2311 198 auprc 0.255256 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_0_10kb 98 1023 106 recall_at_1 0.969388 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_0_10kb 98 1023 106 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_0_10kb 98 1023 106 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_0_10kb 98 1023 106 mrr 0.984694 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_0_10kb 98 1023 106 auroc 0.977933 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_0_10kb 98 1023 106 auprc 0.900757 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_10_50kb 137 1111 159 recall_at_1 0.890511 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_10_50kb 137 1111 159 recall_at_3 0.992701 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_10_50kb 137 1111 159 recall_at_5 0.992701 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_10_50kb 137 1111 159 mrr 0.937551 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_10_50kb 137 1111 159 auroc 0.958347 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_10_50kb 137 1111 159 auprc 0.786274 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_50_100kb 82 624 99 recall_at_1 0.804878 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_50_100kb 82 624 99 recall_at_3 0.975610 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_50_100kb 82 624 99 recall_at_5 0.987805 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_50_100kb 82 624 99 mrr 0.885366 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_50_100kb 82 624 99 auroc 0.922097 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_50_100kb 82 624 99 auprc 0.652540 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_100_500kb 97 1043 124 recall_at_1 0.515464 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_100_500kb 97 1043 124 recall_at_3 0.701031 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_100_500kb 97 1043 124 recall_at_5 0.804124 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_100_500kb 97 1043 124 mrr 0.634051 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_100_500kb 97 1043 124 auroc 0.762514 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_100_500kb 97 1043 124 auprc 0.402904 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_500kb_1mb 54 761 66 recall_at_1 0.166667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_500kb_1mb 54 761 66 recall_at_3 0.388889 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_500kb_1mb 54 761 66 recall_at_5 0.500000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_500kb_1mb 54 761 66 mrr 0.336310 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_500kb_1mb 54 761 66 auroc 0.531371 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout train distance_500kb_1mb 54 761 66 auprc 0.122564 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val all_labeled 813 6244 94 recall_at_1 0.079951 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val all_labeled 813 6244 94 recall_at_3 0.093481 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val all_labeled 813 6244 94 recall_at_5 0.097171 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val all_labeled 813 6244 94 mrr 0.088502 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val all_labeled 813 6244 94 auroc 0.912974 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val all_labeled 813 6244 94 auprc 0.240559 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val positive_target_nearest 57 526 62 recall_at_1 0.947368 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val positive_target_nearest 57 526 62 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val positive_target_nearest 57 526 62 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val positive_target_nearest 57 526 62 mrr 0.973684 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val positive_target_nearest 57 526 62 auroc 0.984462 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val positive_target_nearest 57 526 62 auprc 0.835690 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val positive_target_non_nearest 33 379 41 recall_at_1 0.454545 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val positive_target_non_nearest 33 379 41 recall_at_3 0.696970 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val positive_target_non_nearest 33 379 41 recall_at_5 0.787879 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val positive_target_non_nearest 33 379 41 mrr 0.619762 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val positive_target_non_nearest 33 379 41 auroc 0.790735 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val positive_target_non_nearest 33 379 41 auprc 0.469924 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val positive_target_nearest_only 53 496 53 recall_at_1 0.943396 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val positive_target_nearest_only 53 496 53 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val positive_target_nearest_only 53 496 53 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val positive_target_nearest_only 53 496 53 mrr 0.971698 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val positive_target_nearest_only 53 496 53 auroc 0.986499 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val positive_target_nearest_only 53 496 53 auprc 0.834046 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val positive_target_non_nearest_only 29 349 32 recall_at_1 0.379310 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val positive_target_non_nearest_only 29 349 32 recall_at_3 0.655172 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val positive_target_non_nearest_only 29 349 32 recall_at_5 0.758621 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val positive_target_non_nearest_only 29 349 32 mrr 0.567315 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val positive_target_non_nearest_only 29 349 32 auroc 0.749310 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val positive_target_non_nearest_only 29 349 32 auprc 0.360875 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_0_10kb 30 377 30 recall_at_1 0.966667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_0_10kb 30 377 30 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_0_10kb 30 377 30 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_0_10kb 30 377 30 mrr 0.983333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_0_10kb 30 377 30 auroc 0.994140 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_0_10kb 30 377 30 auprc 0.864111 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_10_50kb 25 192 29 recall_at_1 0.800000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_10_50kb 25 192 29 recall_at_3 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_10_50kb 25 192 29 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_10_50kb 25 192 29 mrr 0.900000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_10_50kb 25 192 29 auroc 0.944785 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_10_50kb 25 192 29 auprc 0.737007 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_50_100kb 15 104 18 recall_at_1 0.866667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_50_100kb 15 104 18 recall_at_3 0.933333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_50_100kb 15 104 18 recall_at_5 1.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_50_100kb 15 104 18 mrr 0.916667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_50_100kb 15 104 18 auroc 0.965762 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_50_100kb 15 104 18 auprc 0.886851 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_100_500kb 15 179 18 recall_at_1 0.333333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_100_500kb 15 179 18 recall_at_3 0.533333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_100_500kb 15 179 18 recall_at_5 0.600000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_100_500kb 15 179 18 mrr 0.493476 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_100_500kb 15 179 18 auroc 0.756039 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_100_500kb 15 179 18 auprc 0.477723 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_500kb_1mb 3 41 5 recall_at_1 0.000000 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_500kb_1mb 3 41 5 recall_at_3 0.333333 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_500kb_1mb 3 41 5 recall_at_5 0.666667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_500kb_1mb 3 41 5 mrr 0.266667 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_500kb_1mb 3 41 5 auroc 0.622222 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 +enhancer_cluster_holdout val distance_500kb_1mb 3 41 5 auprc 0.188581 l2 0.1 False logistic_e2g_activity_contact_c01 0.1.0 diff --git a/results/s2t/gasperini_gse120861/learned_logistic_e2g_activity_contact_c01_slice_metrics.csv b/results/s2t/gasperini_gse120861/learned_logistic_e2g_activity_contact_c01_slice_metrics.csv new file mode 100644 index 0000000000000000000000000000000000000000..470e8284373821a59df67cc7471866b8e3cfa2b3 --- /dev/null +++ b/results/s2t/gasperini_gse120861/learned_logistic_e2g_activity_contact_c01_slice_metrics.csv @@ -0,0 +1,1495 @@ +split_family,split,slice,n_regions,n_pairs,n_positive,metric,value,logistic_penalty,logistic_c,tuned,tune_metric,model_name,model_version +random,test,all_labeled,832,6103,96,recall_at_1,0.07451923076923077,l2,0.1,False,,logistic_e2g_activity_contact_c01,0.1.0 +random,test,all_labeled,832,6103,96,recall_at_3,0.08774038461538461,l2,0.1,False,,logistic_e2g_activity_contact_c01,0.1.0 +random,test,all_labeled,832,6103,96,recall_at_5,0.09014423076923077,l2,0.1,False,,logistic_e2g_activity_contact_c01,0.1.0 +random,test,all_labeled,832,6103,96,mrr,0.08202975564382298,l2,0.1,False,,logistic_e2g_activity_contact_c01,0.1.0 +random,test,all_labeled,832,6103,96,auroc,0.8767202153043672,l2,0.1,False,,logistic_e2g_activity_contact_c01,0.1.0 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a/results/s2t/gasperini_gse120861/learned_logistic_re2g_extended_vhighconf_c0001.log b/results/s2t/gasperini_gse120861/learned_logistic_re2g_extended_vhighconf_c0001.log new file mode 100644 index 0000000000000000000000000000000000000000..87bc857ac63c5c5acd6152fc805e608fe887d233 --- /dev/null +++ b/results/s2t/gasperini_gse120861/learned_logistic_re2g_extended_vhighconf_c0001.log @@ -0,0 +1,1648 @@ + split_family split n_regions n_pairs n_positive metric value logistic_penalty logistic_c tuned tune_metric training_label_policy n_fit_pairs n_fit_positive model_name model_version + random test 832 6103 96 recall_at_1 0.075721 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test 832 6103 96 recall_at_3 0.091346 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test 832 6103 96 recall_at_5 0.091346 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test 832 6103 96 mrr 0.083557 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test 832 6103 96 auroc 0.863978 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test 832 6103 96 auprc 0.266192 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train 3886 28048 458 recall_at_1 0.076428 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train 3886 28048 458 recall_at_3 0.088266 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train 3886 28048 458 recall_at_5 0.092383 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train 3886 28048 458 mrr 0.084034 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train 3886 28048 458 auroc 0.845142 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train 3886 28048 458 auprc 0.236227 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val 827 6171 110 recall_at_1 0.095526 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val 827 6171 110 recall_at_3 0.114873 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val 827 6171 110 recall_at_5 0.117291 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val 827 6171 110 mrr 0.105700 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val 827 6171 110 auroc 0.892024 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val 827 6171 110 auprc 0.251985 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test 102 362 7 recall_at_1 0.039216 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test 102 362 7 recall_at_3 0.068627 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test 102 362 7 recall_at_5 0.068627 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test 102 362 7 mrr 0.053922 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test 102 362 7 auroc 0.910664 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test 102 362 7 auprc 0.175643 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train 5191 36929 618 recall_at_1 0.079175 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train 5191 36929 618 recall_at_3 0.092275 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train 5191 36929 618 recall_at_5 0.095743 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train 5191 36929 618 mrr 0.087090 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train 5191 36929 618 auroc 0.854832 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train 5191 36929 618 auprc 0.239446 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val 252 3031 39 recall_at_1 0.083333 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val 252 3031 39 recall_at_3 0.107143 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val 252 3031 39 recall_at_5 0.111111 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val 252 3031 39 mrr 0.097045 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val 252 3031 39 auroc 0.826135 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val 252 3031 39 auprc 0.294448 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test 1148 9006 131 recall_at_1 0.080139 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test 1148 9006 131 recall_at_3 0.096690 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test 1148 9006 131 recall_at_5 0.100174 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test 1148 9006 131 mrr 0.089613 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test 1148 9006 131 auroc 0.884059 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test 1148 9006 131 auprc 0.309188 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train 4397 31316 533 recall_at_1 0.079145 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train 4397 31316 533 recall_at_3 0.091426 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train 4397 31316 533 recall_at_5 0.094837 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train 4397 31316 533 mrr 0.086745 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train 4397 31316 533 auroc 0.850421 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train 4397 31316 533 auprc 0.230042 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test 1209 8301 134 recall_at_1 0.076096 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test 1209 8301 134 recall_at_3 0.082713 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test 1209 8301 134 recall_at_5 0.083540 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test 1209 8301 134 mrr 0.081047 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test 1209 8301 134 auroc 0.817934 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test 1209 8301 134 auprc 0.216615 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train 4336 32021 530 recall_at_1 0.079566 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train 4336 32021 530 recall_at_3 0.095480 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train 4336 32021 530 recall_at_5 0.099400 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train 4336 32021 530 mrr 0.088846 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train 4336 32021 530 auroc 0.865089 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train 4336 32021 530 auprc 0.262979 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test 961 6051 131 recall_at_1 0.089490 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test 961 6051 131 recall_at_3 0.108221 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test 961 6051 131 recall_at_5 0.113424 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test 961 6051 131 mrr 0.099755 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test 961 6051 131 auroc 0.873268 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test 961 6051 131 auprc 0.258480 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train 4584 34271 533 recall_at_1 0.075480 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train 4584 34271 533 recall_at_3 0.089223 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train 4584 34271 533 recall_at_5 0.092277 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train 4584 34271 533 mrr 0.083809 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train 4584 34271 533 auroc 0.845344 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train 4584 34271 533 auprc 0.233338 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test 1130 9403 135 recall_at_1 0.071681 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test 1130 9403 135 recall_at_3 0.083186 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test 1130 9403 135 recall_at_5 0.089381 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test 1130 9403 135 mrr 0.080216 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test 1130 9403 135 auroc 0.797422 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test 1130 9403 135 auprc 0.215733 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train 4415 30919 529 recall_at_1 0.080861 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train 4415 30919 529 recall_at_3 0.094451 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train 4415 30919 529 recall_at_5 0.097622 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train 4415 30919 529 mrr 0.088830 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train 4415 30919 529 auroc 0.869711 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train 4415 30919 529 auprc 0.254247 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test 1097 7561 133 recall_at_1 0.077484 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test 1097 7561 133 recall_at_3 0.093892 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test 1097 7561 133 recall_at_5 0.097539 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test 1097 7561 133 mrr 0.086474 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test 1097 7561 133 auroc 0.882983 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test 1097 7561 133 auprc 0.238620 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train 4448 32761 531 recall_at_1 0.078687 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train 4448 32761 531 recall_at_3 0.092401 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train 4448 32761 531 recall_at_5 0.095549 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train 4448 32761 531 mrr 0.086978 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train 4448 32761 531 auroc 0.849779 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train 4448 32761 531 auprc 0.245472 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test 122 1433 155 recall_at_1 0.663934 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test 122 1433 155 recall_at_3 0.827869 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test 122 1433 155 recall_at_5 0.860656 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test 122 1433 155 mrr 0.762454 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test 122 1433 155 auroc 0.806033 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test 122 1433 155 auprc 0.555696 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train 5351 38108 427 recall_at_1 0.056438 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train 5351 38108 427 recall_at_3 0.065408 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train 5351 38108 427 recall_at_5 0.067651 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train 5351 38108 427 mrr 0.061768 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train 5351 38108 427 auroc 0.856102 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train 5351 38108 427 auprc 0.190493 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val 72 781 82 recall_at_1 0.708333 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val 72 781 82 recall_at_3 0.847222 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val 72 781 82 recall_at_5 0.888889 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val 72 781 82 mrr 0.798076 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val 72 781 82 auroc 0.889058 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val 72 781 82 auprc 0.660906 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test 1205 9430 155 recall_at_1 0.067220 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test 1205 9430 155 recall_at_3 0.083817 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test 1205 9430 155 recall_at_5 0.087137 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test 1205 9430 155 mrr 0.077181 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test 1205 9430 155 auroc 0.807574 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test 1205 9430 155 auprc 0.196673 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train 3641 25911 427 recall_at_1 0.083768 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train 3641 25911 427 recall_at_3 0.096127 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train 3641 25911 427 recall_at_5 0.099698 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train 3641 25911 427 mrr 0.091188 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train 3641 25911 427 auroc 0.855208 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train 3641 25911 427 auprc 0.243728 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val 699 4981 82 recall_at_1 0.072961 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val 699 4981 82 recall_at_3 0.087268 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val 699 4981 82 recall_at_5 0.091559 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val 699 4981 82 mrr 0.082204 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val 699 4981 82 auroc 0.889933 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val 699 4981 82 auprc 0.288159 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test 819 5961 85 recall_at_1 0.073260 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test 819 5961 85 recall_at_3 0.080586 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test 819 5961 85 recall_at_5 0.080586 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test 819 5961 85 mrr 0.077952 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test 819 5961 85 auroc 0.858135 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test 819 5961 85 auprc 0.242862 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train 3913 28117 485 recall_at_1 0.081268 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train 3913 28117 485 recall_at_3 0.095323 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train 3913 28117 485 recall_at_5 0.099668 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train 3913 28117 485 mrr 0.089678 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train 3913 28117 485 auroc 0.854545 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train 3913 28117 485 auprc 0.243243 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val 813 6244 94 recall_at_1 0.078721 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val 813 6244 94 recall_at_3 0.093481 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val 813 6244 94 recall_at_5 0.093481 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val 813 6244 94 mrr 0.086878 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val 813 6244 94 auroc 0.864062 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val 813 6244 94 auprc 0.304738 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 + +Slice metrics: + split_family split slice n_regions n_pairs n_positive metric value logistic_penalty logistic_c tuned tune_metric training_label_policy n_fit_pairs n_fit_positive model_name model_version + random test all_labeled 832 6103 96 recall_at_1 0.075721 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test all_labeled 832 6103 96 recall_at_3 0.091346 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test all_labeled 832 6103 96 recall_at_5 0.091346 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test all_labeled 832 6103 96 mrr 0.083557 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test all_labeled 832 6103 96 auroc 0.863978 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test all_labeled 832 6103 96 auprc 0.266192 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test positive_target_nearest 53 499 63 recall_at_1 0.981132 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test positive_target_nearest 53 499 63 recall_at_3 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test positive_target_nearest 53 499 63 recall_at_5 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test positive_target_nearest 53 499 63 mrr 0.990566 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test positive_target_nearest 53 499 63 auroc 0.959953 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test positive_target_nearest 53 499 63 auprc 0.873316 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test positive_target_non_nearest 37 510 50 recall_at_1 0.486486 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test positive_target_non_nearest 37 510 50 recall_at_3 0.810811 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test positive_target_non_nearest 37 510 50 recall_at_5 0.810811 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test positive_target_non_nearest 37 510 50 mrr 0.649174 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test positive_target_non_nearest 37 510 50 auroc 0.768087 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test positive_target_non_nearest 37 510 50 auprc 0.436881 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test positive_target_nearest_only 46 392 46 recall_at_1 0.978261 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test positive_target_nearest_only 46 392 46 recall_at_3 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test positive_target_nearest_only 46 392 46 recall_at_5 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test positive_target_nearest_only 46 392 46 mrr 0.989130 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test positive_target_nearest_only 46 392 46 auroc 0.993277 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test positive_target_nearest_only 46 392 46 auprc 0.908881 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test positive_target_non_nearest_only 30 403 33 recall_at_1 0.366667 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test positive_target_non_nearest_only 30 403 33 recall_at_3 0.766667 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test positive_target_non_nearest_only 30 403 33 recall_at_5 0.766667 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test positive_target_non_nearest_only 30 403 33 mrr 0.567314 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test positive_target_non_nearest_only 30 403 33 auroc 0.725717 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test positive_target_non_nearest_only 30 403 33 auprc 0.283420 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_0_10kb 26 326 27 recall_at_1 0.923077 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_0_10kb 26 326 27 recall_at_3 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_0_10kb 26 326 27 recall_at_5 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_0_10kb 26 326 27 mrr 0.961538 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_0_10kb 26 326 27 auroc 0.994426 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_0_10kb 26 326 27 auprc 0.922795 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_10_50kb 26 282 34 recall_at_1 0.884615 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_10_50kb 26 282 34 recall_at_3 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_10_50kb 26 282 34 recall_at_5 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_10_50kb 26 282 34 mrr 0.942308 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_10_50kb 26 282 34 auroc 0.925166 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_10_50kb 26 282 34 auprc 0.767855 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_50_100kb 19 120 24 recall_at_1 0.842105 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_50_100kb 19 120 24 recall_at_3 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_50_100kb 19 120 24 recall_at_5 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_50_100kb 19 120 24 mrr 0.903509 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_50_100kb 19 120 24 auroc 0.943576 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_50_100kb 19 120 24 auprc 0.793309 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_100_500kb 15 226 23 recall_at_1 0.333333 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_100_500kb 15 226 23 recall_at_3 0.666667 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_100_500kb 15 226 23 recall_at_5 0.666667 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_100_500kb 15 226 23 mrr 0.510964 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_100_500kb 15 226 23 auroc 0.675305 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_100_500kb 15 226 23 auprc 0.302932 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_500kb_1mb 3 86 6 recall_at_1 0.333333 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_500kb_1mb 3 86 6 recall_at_3 0.333333 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_500kb_1mb 3 86 6 recall_at_5 0.333333 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_500kb_1mb 3 86 6 mrr 0.396104 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_500kb_1mb 3 86 6 auroc 0.406250 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random test distance_500kb_1mb 3 86 6 auprc 0.219543 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train all_labeled 3886 28048 458 recall_at_1 0.076428 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train all_labeled 3886 28048 458 recall_at_3 0.088266 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train all_labeled 3886 28048 458 recall_at_5 0.092383 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train all_labeled 3886 28048 458 mrr 0.084034 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train all_labeled 3886 28048 458 auroc 0.845142 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train all_labeled 3886 28048 458 auprc 0.236227 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train positive_target_nearest 247 1858 279 recall_at_1 0.975709 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train positive_target_nearest 247 1858 279 recall_at_3 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train positive_target_nearest 247 1858 279 recall_at_5 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train positive_target_nearest 247 1858 279 mrr 0.987854 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train positive_target_nearest 247 1858 279 auroc 0.966130 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train positive_target_nearest 247 1858 279 auprc 0.905171 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train positive_target_non_nearest 191 2529 238 recall_at_1 0.424084 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train positive_target_non_nearest 191 2529 238 recall_at_3 0.643979 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train positive_target_non_nearest 191 2529 238 recall_at_5 0.727749 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train positive_target_non_nearest 191 2529 238 mrr 0.568352 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train positive_target_non_nearest 191 2529 238 auroc 0.727296 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train positive_target_non_nearest 191 2529 238 auprc 0.392967 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train positive_target_nearest_only 220 1544 220 recall_at_1 0.981818 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train positive_target_nearest_only 220 1544 220 recall_at_3 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train positive_target_nearest_only 220 1544 220 recall_at_5 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train positive_target_nearest_only 220 1544 220 mrr 0.990909 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train positive_target_nearest_only 220 1544 220 auroc 0.993014 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train positive_target_nearest_only 220 1544 220 auprc 0.951217 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train positive_target_non_nearest_only 164 2215 179 recall_at_1 0.341463 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train positive_target_non_nearest_only 164 2215 179 recall_at_3 0.585366 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train positive_target_non_nearest_only 164 2215 179 recall_at_5 0.682927 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train positive_target_non_nearest_only 164 2215 179 mrr 0.503385 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train positive_target_non_nearest_only 164 2215 179 auroc 0.683677 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train positive_target_non_nearest_only 164 2215 179 auprc 0.272256 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_0_10kb 95 966 105 recall_at_1 0.978947 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_0_10kb 95 966 105 recall_at_3 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_0_10kb 95 966 105 recall_at_5 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_0_10kb 95 966 105 mrr 0.989474 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_0_10kb 95 966 105 auroc 0.965522 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_0_10kb 95 966 105 auprc 0.926086 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_10_50kb 140 1194 162 recall_at_1 0.892857 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_10_50kb 140 1194 162 recall_at_3 0.985714 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_10_50kb 140 1194 162 recall_at_5 0.992857 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_10_50kb 140 1194 162 mrr 0.939881 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_10_50kb 140 1194 162 auroc 0.953040 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_10_50kb 140 1194 162 auprc 0.829892 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_50_100kb 60 465 74 recall_at_1 0.800000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_50_100kb 60 465 74 recall_at_3 0.983333 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_50_100kb 60 465 74 recall_at_5 0.983333 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_50_100kb 60 465 74 mrr 0.888492 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_50_100kb 60 465 74 auroc 0.943561 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_50_100kb 60 465 74 auprc 0.731312 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_100_500kb 95 1033 121 recall_at_1 0.515789 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_100_500kb 95 1033 121 recall_at_3 0.663158 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_100_500kb 95 1033 121 recall_at_5 0.747368 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_100_500kb 95 1033 121 mrr 0.626043 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_100_500kb 95 1033 121 auroc 0.738201 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_100_500kb 95 1033 121 auprc 0.430528 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_500kb_1mb 51 808 65 recall_at_1 0.098039 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_500kb_1mb 51 808 65 recall_at_3 0.313725 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_500kb_1mb 51 808 65 recall_at_5 0.450980 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_500kb_1mb 51 808 65 mrr 0.266912 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_500kb_1mb 51 808 65 auroc 0.490755 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random train distance_500kb_1mb 51 808 65 auprc 0.135666 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val all_labeled 827 6171 110 recall_at_1 0.095526 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val all_labeled 827 6171 110 recall_at_3 0.114873 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val all_labeled 827 6171 110 recall_at_5 0.117291 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val all_labeled 827 6171 110 mrr 0.105700 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val all_labeled 827 6171 110 auroc 0.892024 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val all_labeled 827 6171 110 auprc 0.251985 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val positive_target_nearest 61 469 65 recall_at_1 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val positive_target_nearest 61 469 65 recall_at_3 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val positive_target_nearest 61 469 65 recall_at_5 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val positive_target_nearest 61 469 65 mrr 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val positive_target_nearest 61 469 65 auroc 0.992727 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val positive_target_nearest 61 469 65 auprc 0.968188 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val positive_target_non_nearest 49 501 53 recall_at_1 0.448980 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val positive_target_non_nearest 49 501 53 recall_at_3 0.775510 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val positive_target_non_nearest 49 501 53 recall_at_5 0.816327 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val positive_target_non_nearest 49 501 53 mrr 0.620685 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val positive_target_non_nearest 49 501 53 auroc 0.784114 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val positive_target_non_nearest 49 501 53 auprc 0.355732 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val positive_target_nearest_only 57 433 57 recall_at_1 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val positive_target_nearest_only 57 433 57 recall_at_3 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val positive_target_nearest_only 57 433 57 recall_at_5 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val positive_target_nearest_only 57 433 57 mrr 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val positive_target_nearest_only 57 433 57 auroc 0.995521 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val positive_target_nearest_only 57 433 57 auprc 0.979555 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val positive_target_non_nearest_only 45 465 45 recall_at_1 0.400000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val positive_target_non_nearest_only 45 465 45 recall_at_3 0.755556 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val positive_target_non_nearest_only 45 465 45 recall_at_5 0.800000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val positive_target_non_nearest_only 45 465 45 mrr 0.586968 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val positive_target_non_nearest_only 45 465 45 auroc 0.758095 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val positive_target_non_nearest_only 45 465 45 auprc 0.287594 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_0_10kb 27 311 28 recall_at_1 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_0_10kb 27 311 28 recall_at_3 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_0_10kb 27 311 28 recall_at_5 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_0_10kb 27 311 28 mrr 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_0_10kb 27 311 28 auroc 0.997350 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_0_10kb 27 311 28 auprc 0.978123 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_10_50kb 26 169 27 recall_at_1 0.807692 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_10_50kb 26 169 27 recall_at_3 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_10_50kb 26 169 27 recall_at_5 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_10_50kb 26 169 27 mrr 0.897436 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_10_50kb 26 169 27 auroc 0.955921 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_10_50kb 26 169 27 auprc 0.730656 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_50_100kb 27 187 28 recall_at_1 0.851852 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_50_100kb 27 187 28 recall_at_3 0.962963 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_50_100kb 27 187 28 recall_at_5 1.000000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_50_100kb 27 187 28 mrr 0.908642 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_50_100kb 27 187 28 auroc 0.925651 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_50_100kb 27 187 28 auprc 0.643667 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_100_500kb 16 141 18 recall_at_1 0.500000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_100_500kb 16 141 18 recall_at_3 0.812500 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_100_500kb 16 141 18 recall_at_5 0.812500 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_100_500kb 16 141 18 mrr 0.657986 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_100_500kb 16 141 18 auroc 0.837398 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_100_500kb 16 141 18 auprc 0.571023 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_500kb_1mb 12 146 13 recall_at_1 0.166667 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_500kb_1mb 12 146 13 recall_at_3 0.416667 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_500kb_1mb 12 146 13 recall_at_5 0.500000 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_500kb_1mb 12 146 13 mrr 0.334925 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_500kb_1mb 12 146 13 auroc 0.567380 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + random val distance_500kb_1mb 12 146 13 auprc 0.140278 l2 0.001 False very_high_confidence 6510 73 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test all_labeled 102 362 7 recall_at_1 0.039216 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test all_labeled 102 362 7 recall_at_3 0.068627 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test all_labeled 102 362 7 recall_at_5 0.068627 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test all_labeled 102 362 7 mrr 0.053922 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test all_labeled 102 362 7 auroc 0.910664 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test all_labeled 102 362 7 auprc 0.175643 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test positive_target_nearest 4 19 4 recall_at_1 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test positive_target_nearest 4 19 4 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test positive_target_nearest 4 19 4 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test positive_target_nearest 4 19 4 mrr 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test positive_target_nearest 4 19 4 auroc 0.983333 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test positive_target_nearest 4 19 4 auprc 0.950000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test positive_target_non_nearest 3 11 3 recall_at_1 0.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test positive_target_non_nearest 3 11 3 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test positive_target_non_nearest 3 11 3 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test positive_target_non_nearest 3 11 3 mrr 0.500000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test positive_target_non_nearest 3 11 3 auroc 0.625000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test positive_target_non_nearest 3 11 3 auprc 0.383333 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test positive_target_nearest_only 4 19 4 recall_at_1 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test positive_target_nearest_only 4 19 4 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test positive_target_nearest_only 4 19 4 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test positive_target_nearest_only 4 19 4 mrr 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test positive_target_nearest_only 4 19 4 auroc 0.983333 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test positive_target_nearest_only 4 19 4 auprc 0.950000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test positive_target_non_nearest_only 3 11 3 recall_at_1 0.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test positive_target_non_nearest_only 3 11 3 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test positive_target_non_nearest_only 3 11 3 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test positive_target_non_nearest_only 3 11 3 mrr 0.500000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test positive_target_non_nearest_only 3 11 3 auroc 0.625000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test positive_target_non_nearest_only 3 11 3 auprc 0.383333 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test distance_0_10kb 1 4 1 recall_at_1 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test distance_0_10kb 1 4 1 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test distance_0_10kb 1 4 1 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test distance_0_10kb 1 4 1 mrr 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test distance_0_10kb 1 4 1 auroc 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test distance_0_10kb 1 4 1 auprc 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test distance_10_50kb 2 5 2 recall_at_1 0.500000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test distance_10_50kb 2 5 2 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test distance_10_50kb 2 5 2 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test distance_10_50kb 2 5 2 mrr 0.750000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test distance_10_50kb 2 5 2 auroc 0.666667 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test distance_10_50kb 2 5 2 auprc 0.750000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test distance_50_100kb 2 13 2 recall_at_1 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test distance_50_100kb 2 13 2 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test distance_50_100kb 2 13 2 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test distance_50_100kb 2 13 2 mrr 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test distance_50_100kb 2 13 2 auroc 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test distance_50_100kb 2 13 2 auprc 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test distance_100_500kb 2 8 2 recall_at_1 0.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test distance_100_500kb 2 8 2 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test distance_100_500kb 2 8 2 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test distance_100_500kb 2 8 2 mrr 0.500000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test distance_100_500kb 2 8 2 auroc 0.666667 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome test distance_100_500kb 2 8 2 auprc 0.416667 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train all_labeled 5191 36929 618 recall_at_1 0.079175 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train all_labeled 5191 36929 618 recall_at_3 0.092275 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train all_labeled 5191 36929 618 recall_at_5 0.095743 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train all_labeled 5191 36929 618 mrr 0.087090 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train all_labeled 5191 36929 618 auroc 0.854832 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train all_labeled 5191 36929 618 auprc 0.239446 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train positive_target_nearest 339 2572 382 recall_at_1 0.967552 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train positive_target_nearest 339 2572 382 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train positive_target_nearest 339 2572 382 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train positive_target_nearest 339 2572 382 mrr 0.983284 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train positive_target_nearest 339 2572 382 auroc 0.971397 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train positive_target_nearest 339 2572 382 auprc 0.909834 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train positive_target_non_nearest 256 3200 314 recall_at_1 0.453125 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train positive_target_non_nearest 256 3200 314 recall_at_3 0.683594 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train positive_target_non_nearest 256 3200 314 recall_at_5 0.753906 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train positive_target_non_nearest 256 3200 314 mrr 0.596679 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train positive_target_non_nearest 256 3200 314 auroc 0.740596 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train positive_target_non_nearest 256 3200 314 auprc 0.395388 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train positive_target_nearest_only 304 2161 304 recall_at_1 0.970395 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train positive_target_nearest_only 304 2161 304 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train positive_target_nearest_only 304 2161 304 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train positive_target_nearest_only 304 2161 304 mrr 0.984649 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train positive_target_nearest_only 304 2161 304 auroc 0.992202 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train positive_target_nearest_only 304 2161 304 auprc 0.946994 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train positive_target_non_nearest_only 221 2789 236 recall_at_1 0.375566 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train positive_target_non_nearest_only 221 2789 236 recall_at_3 0.633484 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train positive_target_non_nearest_only 221 2789 236 recall_at_5 0.714932 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train positive_target_non_nearest_only 221 2789 236 mrr 0.537329 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train positive_target_non_nearest_only 221 2789 236 auroc 0.697496 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train positive_target_non_nearest_only 221 2789 236 auprc 0.278728 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_0_10kb 138 1461 147 recall_at_1 0.963768 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_0_10kb 138 1461 147 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_0_10kb 138 1461 147 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_0_10kb 138 1461 147 mrr 0.980676 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_0_10kb 138 1461 147 auroc 0.983371 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_0_10kb 138 1461 147 auprc 0.932497 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_10_50kb 176 1451 204 recall_at_1 0.869318 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_10_50kb 176 1451 204 recall_at_3 0.988636 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_10_50kb 176 1451 204 recall_at_5 0.994318 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_10_50kb 176 1451 204 mrr 0.928504 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_10_50kb 176 1451 204 auroc 0.950406 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_10_50kb 176 1451 204 auprc 0.822329 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_50_100kb 101 717 121 recall_at_1 0.831683 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_50_100kb 101 717 121 recall_at_3 0.980198 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_50_100kb 101 717 121 recall_at_5 0.990099 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_50_100kb 101 717 121 mrr 0.900495 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_50_100kb 101 717 121 auroc 0.935188 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_50_100kb 101 717 121 auprc 0.712868 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_100_500kb 120 1340 154 recall_at_1 0.516667 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_100_500kb 120 1340 154 recall_at_3 0.658333 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_100_500kb 120 1340 154 recall_at_5 0.741667 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_100_500kb 120 1340 154 mrr 0.625739 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_100_500kb 120 1340 154 auroc 0.733164 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_100_500kb 120 1340 154 auprc 0.414059 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_500kb_1mb 59 880 75 recall_at_1 0.118644 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_500kb_1mb 59 880 75 recall_at_3 0.372881 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_500kb_1mb 59 880 75 recall_at_5 0.474576 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_500kb_1mb 59 880 75 mrr 0.297644 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_500kb_1mb 59 880 75 auroc 0.503371 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome train distance_500kb_1mb 59 880 75 auprc 0.137122 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val all_labeled 252 3031 39 recall_at_1 0.083333 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val all_labeled 252 3031 39 recall_at_3 0.107143 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val all_labeled 252 3031 39 recall_at_5 0.111111 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val all_labeled 252 3031 39 mrr 0.097045 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val all_labeled 252 3031 39 auroc 0.826135 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val all_labeled 252 3031 39 auprc 0.294448 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val positive_target_nearest 18 235 21 recall_at_1 0.888889 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val positive_target_nearest 18 235 21 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val positive_target_nearest 18 235 21 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val positive_target_nearest 18 235 21 mrr 0.944444 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val positive_target_nearest 18 235 21 auroc 0.918336 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val positive_target_nearest 18 235 21 auprc 0.758794 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val positive_target_non_nearest 18 329 24 recall_at_1 0.444444 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val positive_target_non_nearest 18 329 24 recall_at_3 0.666667 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val positive_target_non_nearest 18 329 24 recall_at_5 0.722222 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val positive_target_non_nearest 18 329 24 mrr 0.580853 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val positive_target_non_nearest 18 329 24 auroc 0.714344 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val positive_target_non_nearest 18 329 24 auprc 0.346459 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val positive_target_nearest_only 15 189 15 recall_at_1 0.866667 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val positive_target_nearest_only 15 189 15 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val positive_target_nearest_only 15 189 15 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val positive_target_nearest_only 15 189 15 mrr 0.933333 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val positive_target_nearest_only 15 189 15 auroc 0.985441 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val positive_target_nearest_only 15 189 15 auprc 0.841405 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val positive_target_non_nearest_only 15 283 18 recall_at_1 0.333333 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val positive_target_non_nearest_only 15 283 18 recall_at_3 0.600000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val positive_target_non_nearest_only 15 283 18 recall_at_5 0.666667 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val positive_target_non_nearest_only 15 283 18 mrr 0.497024 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val positive_target_non_nearest_only 15 283 18 auroc 0.705031 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val positive_target_non_nearest_only 15 283 18 auprc 0.261454 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_0_10kb 9 138 12 recall_at_1 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_0_10kb 9 138 12 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_0_10kb 9 138 12 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_0_10kb 9 138 12 mrr 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_0_10kb 9 138 12 auroc 0.866402 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_0_10kb 9 138 12 auprc 0.755137 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_10_50kb 14 189 17 recall_at_1 0.714286 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_10_50kb 14 189 17 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_10_50kb 14 189 17 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_10_50kb 14 189 17 mrr 0.845238 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_10_50kb 14 189 17 auroc 0.951436 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_10_50kb 14 189 17 auprc 0.627588 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_50_100kb 3 42 3 recall_at_1 0.666667 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_50_100kb 3 42 3 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_50_100kb 3 42 3 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_50_100kb 3 42 3 mrr 0.833333 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_50_100kb 3 42 3 auroc 0.982906 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_50_100kb 3 42 3 auprc 0.866667 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_100_500kb 4 52 6 recall_at_1 0.500000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_100_500kb 4 52 6 recall_at_3 0.750000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_100_500kb 4 52 6 recall_at_5 0.750000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_100_500kb 4 52 6 mrr 0.625000 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_100_500kb 4 52 6 auroc 0.623188 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_100_500kb 4 52 6 auprc 0.351960 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_500kb_1mb 7 160 9 recall_at_1 0.142857 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_500kb_1mb 7 160 9 recall_at_3 0.142857 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_500kb_1mb 7 160 9 recall_at_5 0.285714 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_500kb_1mb 7 160 9 mrr 0.255527 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_500kb_1mb 7 160 9 auroc 0.467991 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome val distance_500kb_1mb 7 160 9 auprc 0.166138 l2 0.001 False very_high_confidence 8593 93 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test all_labeled 1148 9006 131 recall_at_1 0.080139 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test all_labeled 1148 9006 131 recall_at_3 0.096690 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test all_labeled 1148 9006 131 recall_at_5 0.100174 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test all_labeled 1148 9006 131 mrr 0.089613 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test all_labeled 1148 9006 131 auroc 0.884059 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test all_labeled 1148 9006 131 auprc 0.309188 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test positive_target_nearest 75 504 79 recall_at_1 0.973333 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test positive_target_nearest 75 504 79 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test positive_target_nearest 75 504 79 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test positive_target_nearest 75 504 79 mrr 0.986667 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test positive_target_nearest 75 504 79 auroc 0.980134 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test positive_target_nearest 75 504 79 auprc 0.952332 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test positive_target_non_nearest 56 685 60 recall_at_1 0.410714 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test positive_target_non_nearest 56 685 60 recall_at_3 0.714286 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test positive_target_non_nearest 56 685 60 recall_at_5 0.785714 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test positive_target_non_nearest 56 685 60 mrr 0.587076 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test positive_target_non_nearest 56 685 60 auroc 0.764560 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test positive_target_non_nearest 56 685 60 auprc 0.353278 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test positive_target_nearest_only 71 466 71 recall_at_1 0.971831 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test positive_target_nearest_only 71 466 71 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test positive_target_nearest_only 71 466 71 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test positive_target_nearest_only 71 466 71 mrr 0.985915 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test positive_target_nearest_only 71 466 71 auroc 0.994331 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test positive_target_nearest_only 71 466 71 auprc 0.970506 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test positive_target_non_nearest_only 52 647 52 recall_at_1 0.365385 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test positive_target_non_nearest_only 52 647 52 recall_at_3 0.692308 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test positive_target_non_nearest_only 52 647 52 recall_at_5 0.769231 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test positive_target_non_nearest_only 52 647 52 mrr 0.555313 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test positive_target_non_nearest_only 52 647 52 auroc 0.748061 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test positive_target_non_nearest_only 52 647 52 auprc 0.305090 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_0_10kb 40 388 42 recall_at_1 0.950000 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_0_10kb 40 388 42 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_0_10kb 40 388 42 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_0_10kb 40 388 42 mrr 0.975000 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_0_10kb 40 388 42 auroc 0.972612 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_0_10kb 40 388 42 auprc 0.910183 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_10_50kb 36 256 39 recall_at_1 0.805556 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_10_50kb 36 256 39 recall_at_3 0.972222 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_10_50kb 36 256 39 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_10_50kb 36 256 39 mrr 0.895833 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_10_50kb 36 256 39 auroc 0.960298 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_10_50kb 36 256 39 auprc 0.778430 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_50_100kb 20 169 21 recall_at_1 0.700000 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_50_100kb 20 169 21 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_50_100kb 20 169 21 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_50_100kb 20 169 21 mrr 0.825000 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_50_100kb 20 169 21 auroc 0.941763 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_50_100kb 20 169 21 auprc 0.653650 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_100_500kb 26 263 28 recall_at_1 0.538462 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_100_500kb 26 263 28 recall_at_3 0.653846 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_100_500kb 26 263 28 recall_at_5 0.730769 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_100_500kb 26 263 28 mrr 0.638889 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_100_500kb 26 263 28 auroc 0.731003 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_100_500kb 26 263 28 auprc 0.384043 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_500kb_1mb 9 113 9 recall_at_1 0.111111 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_500kb_1mb 9 113 9 recall_at_3 0.333333 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_500kb_1mb 9 113 9 recall_at_5 0.444444 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_500kb_1mb 9 113 9 mrr 0.279461 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_500kb_1mb 9 113 9 auroc 0.483974 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 test distance_500kb_1mb 9 113 9 auprc 0.134997 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train all_labeled 4397 31316 533 recall_at_1 0.079145 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train all_labeled 4397 31316 533 recall_at_3 0.091426 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train all_labeled 4397 31316 533 recall_at_5 0.094837 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train all_labeled 4397 31316 533 mrr 0.086745 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train all_labeled 4397 31316 533 auroc 0.850421 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train all_labeled 4397 31316 533 auprc 0.230042 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train positive_target_nearest 286 2322 328 recall_at_1 0.975524 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train positive_target_nearest 286 2322 328 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train positive_target_nearest 286 2322 328 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train positive_target_nearest 286 2322 328 mrr 0.987762 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train positive_target_nearest 286 2322 328 auroc 0.967193 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train positive_target_nearest 286 2322 328 auprc 0.877927 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train positive_target_non_nearest 221 2855 281 recall_at_1 0.457014 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train positive_target_non_nearest 221 2855 281 recall_at_3 0.678733 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train positive_target_non_nearest 221 2855 281 recall_at_5 0.746606 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train positive_target_non_nearest 221 2855 281 mrr 0.596907 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train positive_target_non_nearest 221 2855 281 auroc 0.734241 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train positive_target_non_nearest 221 2855 281 auprc 0.398401 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train positive_target_nearest_only 252 1903 252 recall_at_1 0.980159 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train positive_target_nearest_only 252 1903 252 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train positive_target_nearest_only 252 1903 252 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train positive_target_nearest_only 252 1903 252 mrr 0.990079 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train positive_target_nearest_only 252 1903 252 auroc 0.991472 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train positive_target_nearest_only 252 1903 252 auprc 0.922053 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train positive_target_non_nearest_only 187 2436 205 recall_at_1 0.368984 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train positive_target_non_nearest_only 187 2436 205 recall_at_3 0.620321 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train positive_target_non_nearest_only 187 2436 205 recall_at_5 0.700535 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train positive_target_non_nearest_only 187 2436 205 mrr 0.528965 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train positive_target_non_nearest_only 187 2436 205 auroc 0.686589 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train positive_target_non_nearest_only 187 2436 205 auprc 0.269053 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_0_10kb 108 1215 118 recall_at_1 0.990741 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_0_10kb 108 1215 118 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_0_10kb 108 1215 118 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_0_10kb 108 1215 118 mrr 0.995370 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_0_10kb 108 1215 118 auroc 0.978748 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_0_10kb 108 1215 118 auprc 0.930650 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_10_50kb 156 1389 184 recall_at_1 0.884615 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_10_50kb 156 1389 184 recall_at_3 0.993590 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_10_50kb 156 1389 184 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_10_50kb 156 1389 184 mrr 0.937179 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_10_50kb 156 1389 184 auroc 0.947262 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_10_50kb 156 1389 184 auprc 0.793349 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_50_100kb 86 603 105 recall_at_1 0.848837 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_50_100kb 86 603 105 recall_at_3 0.976744 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_50_100kb 86 603 105 recall_at_5 0.988372 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_50_100kb 86 603 105 mrr 0.912901 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_50_100kb 86 603 105 auroc 0.935284 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_50_100kb 86 603 105 auprc 0.715985 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_100_500kb 100 1137 134 recall_at_1 0.490000 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_100_500kb 100 1137 134 recall_at_3 0.680000 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_100_500kb 100 1137 134 recall_at_5 0.750000 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_100_500kb 100 1137 134 mrr 0.617618 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_100_500kb 100 1137 134 auroc 0.734476 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_100_500kb 100 1137 134 auprc 0.417354 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_500kb_1mb 57 927 75 recall_at_1 0.140351 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_500kb_1mb 57 927 75 recall_at_3 0.333333 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_500kb_1mb 57 927 75 recall_at_5 0.438596 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_500kb_1mb 57 927 75 mrr 0.295819 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_500kb_1mb 57 927 75 auroc 0.493552 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_1 train distance_500kb_1mb 57 927 75 auprc 0.144338 l2 0.001 False very_high_confidence 7219 77 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test all_labeled 1209 8301 134 recall_at_1 0.076096 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test all_labeled 1209 8301 134 recall_at_3 0.082713 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test all_labeled 1209 8301 134 recall_at_5 0.083540 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test all_labeled 1209 8301 134 mrr 0.081047 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test all_labeled 1209 8301 134 auroc 0.817934 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test all_labeled 1209 8301 134 auprc 0.216615 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test positive_target_nearest 81 600 88 recall_at_1 0.975309 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test positive_target_nearest 81 600 88 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test positive_target_nearest 81 600 88 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test positive_target_nearest 81 600 88 mrr 0.987654 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test positive_target_nearest 81 600 88 auroc 0.982111 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test positive_target_nearest 81 600 88 auprc 0.940148 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test positive_target_non_nearest 45 559 59 recall_at_1 0.422222 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test positive_target_non_nearest 45 559 59 recall_at_3 0.555556 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test positive_target_non_nearest 45 559 59 recall_at_5 0.577778 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test positive_target_non_nearest 45 559 59 mrr 0.533012 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test positive_target_non_nearest 45 559 59 auroc 0.645254 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test positive_target_non_nearest 45 559 59 auprc 0.396287 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test positive_target_nearest_only 75 545 75 recall_at_1 0.973333 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test positive_target_nearest_only 75 545 75 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test positive_target_nearest_only 75 545 75 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test positive_target_nearest_only 75 545 75 mrr 0.986667 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test positive_target_nearest_only 75 545 75 auroc 0.992652 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test positive_target_nearest_only 75 545 75 auprc 0.956714 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test positive_target_non_nearest_only 39 504 46 recall_at_1 0.333333 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test positive_target_non_nearest_only 39 504 46 recall_at_3 0.487179 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test positive_target_non_nearest_only 39 504 46 recall_at_5 0.512821 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test positive_target_non_nearest_only 39 504 46 mrr 0.461167 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test positive_target_non_nearest_only 39 504 46 auroc 0.573239 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test positive_target_non_nearest_only 39 504 46 auprc 0.257496 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_0_10kb 22 200 24 recall_at_1 0.954545 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_0_10kb 22 200 24 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_0_10kb 22 200 24 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_0_10kb 22 200 24 mrr 0.977273 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_0_10kb 22 200 24 auroc 0.996212 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_0_10kb 22 200 24 auprc 0.976774 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_10_50kb 45 403 48 recall_at_1 0.955556 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_10_50kb 45 403 48 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_10_50kb 45 403 48 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_10_50kb 45 403 48 mrr 0.977778 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_10_50kb 45 403 48 auroc 0.970716 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_10_50kb 45 403 48 auprc 0.914558 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_50_100kb 23 135 25 recall_at_1 0.913043 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_50_100kb 23 135 25 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_50_100kb 23 135 25 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_50_100kb 23 135 25 mrr 0.956522 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_50_100kb 23 135 25 auroc 0.971273 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_50_100kb 23 135 25 auprc 0.805715 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_100_500kb 26 286 37 recall_at_1 0.461538 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_100_500kb 26 286 37 recall_at_3 0.538462 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_100_500kb 26 286 37 recall_at_5 0.576923 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_100_500kb 26 286 37 mrr 0.551014 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_100_500kb 26 286 37 auroc 0.664821 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_100_500kb 26 286 37 auprc 0.483586 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_500kb_1mb 10 142 13 recall_at_1 0.000000 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_500kb_1mb 10 142 13 recall_at_3 0.100000 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_500kb_1mb 10 142 13 recall_at_5 0.100000 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_500kb_1mb 10 142 13 mrr 0.125007 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_500kb_1mb 10 142 13 auroc 0.288014 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 test distance_500kb_1mb 10 142 13 auprc 0.064952 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train all_labeled 4336 32021 530 recall_at_1 0.079566 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train all_labeled 4336 32021 530 recall_at_3 0.095480 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train all_labeled 4336 32021 530 recall_at_5 0.099400 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train all_labeled 4336 32021 530 mrr 0.088846 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train all_labeled 4336 32021 530 auroc 0.865089 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train all_labeled 4336 32021 530 auprc 0.262979 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train positive_target_nearest 280 2226 319 recall_at_1 0.964286 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train positive_target_nearest 280 2226 319 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train positive_target_nearest 280 2226 319 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train positive_target_nearest 280 2226 319 mrr 0.982143 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train positive_target_nearest 280 2226 319 auroc 0.965047 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train positive_target_nearest 280 2226 319 auprc 0.884921 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train positive_target_non_nearest 232 2981 282 recall_at_1 0.452586 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train positive_target_non_nearest 232 2981 282 recall_at_3 0.715517 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train positive_target_non_nearest 232 2981 282 recall_at_5 0.788793 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train positive_target_non_nearest 232 2981 282 mrr 0.608780 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train positive_target_non_nearest 232 2981 282 auroc 0.764101 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train positive_target_non_nearest 232 2981 282 auprc 0.398144 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train positive_target_nearest_only 248 1824 248 recall_at_1 0.967742 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train positive_target_nearest_only 248 1824 248 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train positive_target_nearest_only 248 1824 248 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train positive_target_nearest_only 248 1824 248 mrr 0.983871 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train positive_target_nearest_only 248 1824 248 auroc 0.992005 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train positive_target_nearest_only 248 1824 248 auprc 0.929794 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train positive_target_non_nearest_only 200 2579 211 recall_at_1 0.375000 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train positive_target_non_nearest_only 200 2579 211 recall_at_3 0.670000 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train positive_target_non_nearest_only 200 2579 211 recall_at_5 0.755000 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train positive_target_non_nearest_only 200 2579 211 mrr 0.551184 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train positive_target_non_nearest_only 200 2579 211 auroc 0.732832 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train positive_target_non_nearest_only 200 2579 211 auprc 0.292651 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_0_10kb 126 1403 136 recall_at_1 0.968254 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_0_10kb 126 1403 136 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_0_10kb 126 1403 136 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_0_10kb 126 1403 136 mrr 0.984127 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_0_10kb 126 1403 136 auroc 0.971407 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_0_10kb 126 1403 136 auprc 0.909421 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_10_50kb 147 1242 175 recall_at_1 0.836735 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_10_50kb 147 1242 175 recall_at_3 0.986395 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_10_50kb 147 1242 175 recall_at_5 0.993197 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_10_50kb 147 1242 175 mrr 0.912132 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_10_50kb 147 1242 175 auroc 0.943826 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_10_50kb 147 1242 175 auprc 0.768448 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_50_100kb 83 637 101 recall_at_1 0.807229 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_50_100kb 83 637 101 recall_at_3 0.975904 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_50_100kb 83 637 101 recall_at_5 0.987952 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_50_100kb 83 637 101 mrr 0.885944 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_50_100kb 83 637 101 auroc 0.933907 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_50_100kb 83 637 101 auprc 0.700905 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_100_500kb 100 1114 125 recall_at_1 0.500000 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_100_500kb 100 1114 125 recall_at_3 0.730000 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_100_500kb 100 1114 125 recall_at_5 0.800000 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_100_500kb 100 1114 125 mrr 0.638162 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_100_500kb 100 1114 125 auroc 0.756870 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_100_500kb 100 1114 125 auprc 0.401698 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_500kb_1mb 56 898 71 recall_at_1 0.160714 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_500kb_1mb 56 898 71 recall_at_3 0.357143 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_500kb_1mb 56 898 71 recall_at_5 0.500000 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_500kb_1mb 56 898 71 mrr 0.323881 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_500kb_1mb 56 898 71 auroc 0.529250 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_2 train distance_500kb_1mb 56 898 71 auprc 0.157260 l2 0.001 False very_high_confidence 7469 80 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test all_labeled 961 6051 131 recall_at_1 0.089490 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test all_labeled 961 6051 131 recall_at_3 0.108221 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test all_labeled 961 6051 131 recall_at_5 0.113424 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test all_labeled 961 6051 131 mrr 0.099755 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test all_labeled 961 6051 131 auroc 0.873268 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test all_labeled 961 6051 131 auprc 0.258480 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test positive_target_nearest 70 588 83 recall_at_1 0.971429 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test positive_target_nearest 70 588 83 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test positive_target_nearest 70 588 83 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test positive_target_nearest 70 588 83 mrr 0.985714 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test positive_target_nearest 70 588 83 auroc 0.961374 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test positive_target_nearest 70 588 83 auprc 0.843867 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test positive_target_non_nearest 56 596 71 recall_at_1 0.500000 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test positive_target_non_nearest 56 596 71 recall_at_3 0.785714 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test positive_target_non_nearest 56 596 71 recall_at_5 0.875000 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test positive_target_non_nearest 56 596 71 mrr 0.658289 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test positive_target_non_nearest 56 596 71 auroc 0.771429 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test positive_target_non_nearest 56 596 71 auprc 0.443163 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test positive_target_nearest_only 60 484 60 recall_at_1 0.966667 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test positive_target_nearest_only 60 484 60 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test positive_target_nearest_only 60 484 60 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test positive_target_nearest_only 60 484 60 mrr 0.983333 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test positive_target_nearest_only 60 484 60 auroc 0.990527 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test positive_target_nearest_only 60 484 60 auprc 0.892167 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test positive_target_non_nearest_only 46 492 48 recall_at_1 0.391304 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test positive_target_non_nearest_only 46 492 48 recall_at_3 0.739130 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test positive_target_non_nearest_only 46 492 48 recall_at_5 0.847826 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test positive_target_non_nearest_only 46 492 48 mrr 0.584004 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test positive_target_non_nearest_only 46 492 48 auroc 0.740991 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test positive_target_non_nearest_only 46 492 48 auprc 0.314291 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_0_10kb 28 355 29 recall_at_1 1.000000 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_0_10kb 28 355 29 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_0_10kb 28 355 29 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_0_10kb 28 355 29 mrr 1.000000 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_0_10kb 28 355 29 auroc 0.980326 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_0_10kb 28 355 29 auprc 0.922905 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_10_50kb 27 190 32 recall_at_1 0.851852 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_10_50kb 27 190 32 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_10_50kb 27 190 32 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_10_50kb 27 190 32 mrr 0.919753 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_10_50kb 27 190 32 auroc 0.970332 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_10_50kb 27 190 32 auprc 0.805956 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_50_100kb 33 204 44 recall_at_1 0.878788 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_50_100kb 33 204 44 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_50_100kb 33 204 44 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_50_100kb 33 204 44 mrr 0.934343 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_50_100kb 33 204 44 auroc 0.906392 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_50_100kb 33 204 44 auprc 0.734904 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_100_500kb 21 185 30 recall_at_1 0.571429 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_100_500kb 21 185 30 recall_at_3 0.809524 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_100_500kb 21 185 30 recall_at_5 0.904762 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_100_500kb 21 185 30 mrr 0.719093 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_100_500kb 21 185 30 auroc 0.790753 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_100_500kb 21 185 30 auprc 0.470006 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_500kb_1mb 16 251 21 recall_at_1 0.187500 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_500kb_1mb 16 251 21 recall_at_3 0.500000 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_500kb_1mb 16 251 21 recall_at_5 0.687500 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_500kb_1mb 16 251 21 mrr 0.381036 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_500kb_1mb 16 251 21 auroc 0.522153 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 test distance_500kb_1mb 16 251 21 auprc 0.189103 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train all_labeled 4584 34271 533 recall_at_1 0.075480 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train all_labeled 4584 34271 533 recall_at_3 0.089223 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train all_labeled 4584 34271 533 recall_at_5 0.092277 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train all_labeled 4584 34271 533 mrr 0.083809 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train all_labeled 4584 34271 533 auroc 0.845344 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train all_labeled 4584 34271 533 auprc 0.233338 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train positive_target_nearest 291 2238 324 recall_at_1 0.972509 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train positive_target_nearest 291 2238 324 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train positive_target_nearest 291 2238 324 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train positive_target_nearest 291 2238 324 mrr 0.986254 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train positive_target_nearest 291 2238 324 auroc 0.965999 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train positive_target_nearest 291 2238 324 auprc 0.898395 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train positive_target_non_nearest 221 2944 270 recall_at_1 0.402715 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train positive_target_non_nearest 221 2944 270 recall_at_3 0.660633 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train positive_target_non_nearest 221 2944 270 recall_at_5 0.723982 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train positive_target_non_nearest 221 2944 270 mrr 0.561905 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train positive_target_non_nearest 221 2944 270 auroc 0.714744 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train positive_target_non_nearest 221 2944 270 auprc 0.345808 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train positive_target_nearest_only 263 1885 263 recall_at_1 0.977186 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train positive_target_nearest_only 263 1885 263 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train positive_target_nearest_only 263 1885 263 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train positive_target_nearest_only 263 1885 263 mrr 0.988593 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train positive_target_nearest_only 263 1885 263 auroc 0.989843 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train positive_target_nearest_only 263 1885 263 auprc 0.939403 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train positive_target_non_nearest_only 193 2591 209 recall_at_1 0.326425 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train positive_target_non_nearest_only 193 2591 209 recall_at_3 0.611399 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train positive_target_non_nearest_only 193 2591 209 recall_at_5 0.683938 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train positive_target_non_nearest_only 193 2591 209 mrr 0.503529 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train positive_target_non_nearest_only 193 2591 209 auroc 0.672556 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train positive_target_non_nearest_only 193 2591 209 auprc 0.245841 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_0_10kb 120 1248 131 recall_at_1 0.950000 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_0_10kb 120 1248 131 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_0_10kb 120 1248 131 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_0_10kb 120 1248 131 mrr 0.975000 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_0_10kb 120 1248 131 auroc 0.971454 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_0_10kb 120 1248 131 auprc 0.898273 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_10_50kb 165 1455 191 recall_at_1 0.866667 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_10_50kb 165 1455 191 recall_at_3 0.987879 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_10_50kb 165 1455 191 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_10_50kb 165 1455 191 mrr 0.927273 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_10_50kb 165 1455 191 auroc 0.944343 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_10_50kb 165 1455 191 auprc 0.777702 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_50_100kb 73 568 82 recall_at_1 0.780822 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_50_100kb 73 568 82 recall_at_3 0.972603 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_50_100kb 73 568 82 recall_at_5 0.986301 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_50_100kb 73 568 82 mrr 0.873973 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_50_100kb 73 568 82 auroc 0.945047 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_50_100kb 73 568 82 auprc 0.664107 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_100_500kb 105 1215 132 recall_at_1 0.466667 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_100_500kb 105 1215 132 recall_at_3 0.638095 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_100_500kb 105 1215 132 recall_at_5 0.714286 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_100_500kb 105 1215 132 mrr 0.590418 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_100_500kb 105 1215 132 auroc 0.701412 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_100_500kb 105 1215 132 auprc 0.367765 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_500kb_1mb 50 789 63 recall_at_1 0.100000 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_500kb_1mb 50 789 63 recall_at_3 0.300000 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_500kb_1mb 50 789 63 recall_at_5 0.360000 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_500kb_1mb 50 789 63 mrr 0.256409 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_500kb_1mb 50 789 63 auroc 0.427916 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_3 train distance_500kb_1mb 50 789 63 auprc 0.120151 l2 0.001 False very_high_confidence 8007 79 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test all_labeled 1130 9403 135 recall_at_1 0.071681 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test all_labeled 1130 9403 135 recall_at_3 0.083186 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test all_labeled 1130 9403 135 recall_at_5 0.089381 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test all_labeled 1130 9403 135 mrr 0.080216 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test all_labeled 1130 9403 135 auroc 0.797422 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test all_labeled 1130 9403 135 auprc 0.215733 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test positive_target_nearest 66 582 75 recall_at_1 0.969697 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test positive_target_nearest 66 582 75 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test positive_target_nearest 66 582 75 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test positive_target_nearest 66 582 75 mrr 0.984848 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test positive_target_nearest 66 582 75 auroc 0.948139 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test positive_target_nearest 66 582 75 auprc 0.889446 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test positive_target_non_nearest 63 998 76 recall_at_1 0.349206 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test positive_target_non_nearest 63 998 76 recall_at_3 0.555556 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test positive_target_non_nearest 63 998 76 recall_at_5 0.666667 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test positive_target_non_nearest 63 998 76 mrr 0.502287 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test positive_target_non_nearest 63 998 76 auroc 0.686808 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test positive_target_non_nearest 63 998 76 auprc 0.271321 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test positive_target_nearest_only 59 459 59 recall_at_1 1.000000 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test positive_target_nearest_only 59 459 59 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test positive_target_nearest_only 59 459 59 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test positive_target_nearest_only 59 459 59 mrr 1.000000 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test positive_target_nearest_only 59 459 59 auroc 0.992076 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test positive_target_nearest_only 59 459 59 auprc 0.972121 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test positive_target_non_nearest_only 56 875 60 recall_at_1 0.303571 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test positive_target_non_nearest_only 56 875 60 recall_at_3 0.500000 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test positive_target_non_nearest_only 56 875 60 recall_at_5 0.625000 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test positive_target_non_nearest_only 56 875 60 mrr 0.457930 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test positive_target_non_nearest_only 56 875 60 auroc 0.658200 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test positive_target_non_nearest_only 56 875 60 auprc 0.208433 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_0_10kb 33 401 35 recall_at_1 0.969697 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_0_10kb 33 401 35 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_0_10kb 33 401 35 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_0_10kb 33 401 35 mrr 0.984848 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_0_10kb 33 401 35 auroc 0.995160 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_0_10kb 33 401 35 auprc 0.954812 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_10_50kb 36 350 45 recall_at_1 0.861111 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_10_50kb 36 350 45 recall_at_3 0.972222 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_10_50kb 36 350 45 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_10_50kb 36 350 45 mrr 0.922222 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_10_50kb 36 350 45 auroc 0.906084 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_10_50kb 36 350 45 auprc 0.768379 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_50_100kb 10 101 10 recall_at_1 0.500000 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_50_100kb 10 101 10 recall_at_3 0.800000 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_50_100kb 10 101 10 recall_at_5 0.900000 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_50_100kb 10 101 10 mrr 0.684286 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_50_100kb 10 101 10 auroc 0.836264 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_50_100kb 10 101 10 auprc 0.378621 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_100_500kb 30 444 38 recall_at_1 0.533333 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_100_500kb 30 444 38 recall_at_3 0.633333 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_100_500kb 30 444 38 recall_at_5 0.700000 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_100_500kb 30 444 38 mrr 0.616801 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_100_500kb 30 444 38 auroc 0.729129 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_100_500kb 30 444 38 auprc 0.345370 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_500kb_1mb 21 338 28 recall_at_1 0.095238 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_500kb_1mb 21 338 28 recall_at_3 0.333333 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_500kb_1mb 21 338 28 recall_at_5 0.476190 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_500kb_1mb 21 338 28 mrr 0.282405 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_500kb_1mb 21 338 28 auroc 0.510484 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 test distance_500kb_1mb 21 338 28 auprc 0.166677 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train all_labeled 4415 30919 529 recall_at_1 0.080861 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train all_labeled 4415 30919 529 recall_at_3 0.094451 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train all_labeled 4415 30919 529 recall_at_5 0.097622 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train all_labeled 4415 30919 529 mrr 0.088830 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train all_labeled 4415 30919 529 auroc 0.869711 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train all_labeled 4415 30919 529 auprc 0.254247 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train positive_target_nearest 295 2244 332 recall_at_1 0.976271 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train positive_target_nearest 295 2244 332 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train positive_target_nearest 295 2244 332 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train positive_target_nearest 295 2244 332 mrr 0.988136 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train positive_target_nearest 295 2244 332 auroc 0.971677 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train positive_target_nearest 295 2244 332 auprc 0.895863 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train positive_target_non_nearest 214 2542 265 recall_at_1 0.467290 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train positive_target_non_nearest 214 2542 265 recall_at_3 0.714953 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train positive_target_non_nearest 214 2542 265 recall_at_5 0.780374 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train positive_target_non_nearest 214 2542 265 mrr 0.615350 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train positive_target_non_nearest 214 2542 265 auroc 0.751154 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train positive_target_non_nearest 214 2542 265 auprc 0.413424 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train positive_target_nearest_only 264 1910 264 recall_at_1 0.973485 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train positive_target_nearest_only 264 1910 264 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train positive_target_nearest_only 264 1910 264 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train positive_target_nearest_only 264 1910 264 mrr 0.986742 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train positive_target_nearest_only 264 1910 264 auroc 0.990956 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train positive_target_nearest_only 264 1910 264 auprc 0.929077 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train positive_target_non_nearest_only 183 2208 197 recall_at_1 0.377049 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train positive_target_non_nearest_only 183 2208 197 recall_at_3 0.666667 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train positive_target_non_nearest_only 183 2208 197 recall_at_5 0.743169 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train positive_target_non_nearest_only 183 2208 197 mrr 0.550191 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train positive_target_non_nearest_only 183 2208 197 auroc 0.707452 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train positive_target_non_nearest_only 183 2208 197 auprc 0.286896 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_0_10kb 115 1202 125 recall_at_1 0.973913 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_0_10kb 115 1202 125 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_0_10kb 115 1202 125 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_0_10kb 115 1202 125 mrr 0.986957 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_0_10kb 115 1202 125 auroc 0.970399 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_0_10kb 115 1202 125 auprc 0.912166 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_10_50kb 156 1295 178 recall_at_1 0.865385 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_10_50kb 156 1295 178 recall_at_3 0.993590 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_10_50kb 156 1295 178 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_10_50kb 156 1295 178 mrr 0.927885 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_10_50kb 156 1295 178 auroc 0.963782 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_10_50kb 156 1295 178 auprc 0.806823 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_50_100kb 96 671 116 recall_at_1 0.864583 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_50_100kb 96 671 116 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_50_100kb 96 671 116 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_50_100kb 96 671 116 mrr 0.925347 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_50_100kb 96 671 116 auroc 0.949922 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_50_100kb 96 671 116 auprc 0.758689 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_100_500kb 96 956 124 recall_at_1 0.479167 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_100_500kb 96 956 124 recall_at_3 0.677083 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_100_500kb 96 956 124 recall_at_5 0.760417 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_100_500kb 96 956 124 mrr 0.614703 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_100_500kb 96 956 124 auroc 0.725012 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_100_500kb 96 956 124 auprc 0.408606 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_500kb_1mb 45 702 56 recall_at_1 0.155556 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_500kb_1mb 45 702 56 recall_at_3 0.311111 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_500kb_1mb 45 702 56 recall_at_5 0.422222 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_500kb_1mb 45 702 56 mrr 0.292911 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_500kb_1mb 45 702 56 auroc 0.461908 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_4 train distance_500kb_1mb 45 702 56 auprc 0.134936 l2 0.001 False very_high_confidence 7202 88 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test all_labeled 1097 7561 133 recall_at_1 0.077484 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test all_labeled 1097 7561 133 recall_at_3 0.093892 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test all_labeled 1097 7561 133 recall_at_5 0.097539 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test all_labeled 1097 7561 133 mrr 0.086474 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test all_labeled 1097 7561 133 auroc 0.882983 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test all_labeled 1097 7561 133 auprc 0.238620 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test positive_target_nearest 69 552 82 recall_at_1 0.956522 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test positive_target_nearest 69 552 82 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test positive_target_nearest 69 552 82 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test positive_target_nearest 69 552 82 mrr 0.978261 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test positive_target_nearest 69 552 82 auroc 0.957732 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test positive_target_nearest 69 552 82 auprc 0.840191 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test positive_target_non_nearest 57 702 75 recall_at_1 0.526316 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test positive_target_non_nearest 57 702 75 recall_at_3 0.789474 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test positive_target_non_nearest 57 702 75 recall_at_5 0.859649 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test positive_target_non_nearest 57 702 75 mrr 0.673026 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test positive_target_non_nearest 57 702 75 auroc 0.790069 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test positive_target_non_nearest 57 702 75 auprc 0.477841 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test positive_target_nearest_only 58 415 58 recall_at_1 0.948276 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test positive_target_nearest_only 58 415 58 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test positive_target_nearest_only 58 415 58 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test positive_target_nearest_only 58 415 58 mrr 0.974138 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test positive_target_nearest_only 58 415 58 auroc 0.979909 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test positive_target_nearest_only 58 415 58 auprc 0.876319 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test positive_target_non_nearest_only 46 565 51 recall_at_1 0.413043 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test positive_target_non_nearest_only 46 565 51 recall_at_3 0.739130 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test positive_target_non_nearest_only 46 565 51 recall_at_5 0.826087 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test positive_target_non_nearest_only 46 565 51 mrr 0.594837 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test positive_target_non_nearest_only 46 565 51 auroc 0.742161 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test positive_target_non_nearest_only 46 565 51 auprc 0.330411 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_0_10kb 25 259 30 recall_at_1 1.000000 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_0_10kb 25 259 30 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_0_10kb 25 259 30 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_0_10kb 25 259 30 mrr 1.000000 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_0_10kb 25 259 30 auroc 0.933770 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_0_10kb 25 259 30 auprc 0.847121 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_10_50kb 48 446 59 recall_at_1 0.812500 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_10_50kb 48 446 59 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_10_50kb 48 446 59 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_10_50kb 48 446 59 mrr 0.899306 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_10_50kb 48 446 59 auroc 0.944773 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_10_50kb 48 446 59 auprc 0.741078 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_50_100kb 20 163 26 recall_at_1 0.900000 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_50_100kb 20 163 26 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_50_100kb 20 163 26 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_50_100kb 20 163 26 mrr 0.941667 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_50_100kb 20 163 26 auroc 0.974172 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_50_100kb 20 163 26 auprc 0.855000 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_100_500kb 23 222 29 recall_at_1 0.434783 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_100_500kb 23 222 29 recall_at_3 0.739130 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_100_500kb 23 222 29 recall_at_5 0.869565 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_100_500kb 23 222 29 mrr 0.616356 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_100_500kb 23 222 29 auroc 0.700197 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_100_500kb 23 222 29 auprc 0.335611 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_500kb_1mb 10 196 13 recall_at_1 0.100000 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_500kb_1mb 10 196 13 recall_at_3 0.300000 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_500kb_1mb 10 196 13 recall_at_5 0.400000 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_500kb_1mb 10 196 13 mrr 0.268631 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_500kb_1mb 10 196 13 auroc 0.453972 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 test distance_500kb_1mb 10 196 13 auprc 0.156943 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train all_labeled 4448 32761 531 recall_at_1 0.078687 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train all_labeled 4448 32761 531 recall_at_3 0.092401 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train all_labeled 4448 32761 531 recall_at_5 0.095549 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train all_labeled 4448 32761 531 mrr 0.086978 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train all_labeled 4448 32761 531 auroc 0.849779 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train all_labeled 4448 32761 531 auprc 0.245472 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train positive_target_nearest 292 2274 325 recall_at_1 0.958904 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train positive_target_nearest 292 2274 325 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train positive_target_nearest 292 2274 325 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train positive_target_nearest 292 2274 325 mrr 0.978881 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train positive_target_nearest 292 2274 325 auroc 0.966474 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train positive_target_nearest 292 2274 325 auprc 0.892498 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train positive_target_non_nearest 220 2838 266 recall_at_1 0.431818 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train positive_target_non_nearest 220 2838 266 recall_at_3 0.663636 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train positive_target_non_nearest 220 2838 266 recall_at_5 0.727273 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train positive_target_non_nearest 220 2838 266 mrr 0.577485 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train positive_target_non_nearest 220 2838 266 auroc 0.728066 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train positive_target_non_nearest 220 2838 266 auprc 0.375118 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train positive_target_nearest_only 265 1954 265 recall_at_1 0.962264 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train positive_target_nearest_only 265 1954 265 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train positive_target_nearest_only 265 1954 265 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train positive_target_nearest_only 265 1954 265 mrr 0.980503 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train positive_target_nearest_only 265 1954 265 auroc 0.988719 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train positive_target_nearest_only 265 1954 265 auprc 0.930960 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train positive_target_non_nearest_only 193 2518 206 recall_at_1 0.362694 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train positive_target_non_nearest_only 193 2518 206 recall_at_3 0.616580 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train positive_target_non_nearest_only 193 2518 206 recall_at_5 0.689119 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train positive_target_non_nearest_only 193 2518 206 mrr 0.523558 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train positive_target_non_nearest_only 193 2518 206 auroc 0.691305 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train positive_target_non_nearest_only 193 2518 206 auprc 0.278656 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_0_10kb 123 1344 130 recall_at_1 0.959350 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_0_10kb 123 1344 130 recall_at_3 1.000000 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_0_10kb 123 1344 130 recall_at_5 1.000000 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_0_10kb 123 1344 130 mrr 0.978320 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_0_10kb 123 1344 130 auroc 0.983994 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_0_10kb 123 1344 130 auprc 0.929305 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_10_50kb 144 1199 164 recall_at_1 0.875000 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_10_50kb 144 1199 164 recall_at_3 0.986111 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_10_50kb 144 1199 164 recall_at_5 0.993056 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_10_50kb 144 1199 164 mrr 0.932292 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_10_50kb 144 1199 164 auroc 0.949511 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_10_50kb 144 1199 164 auprc 0.804422 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_50_100kb 86 609 100 recall_at_1 0.813953 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_50_100kb 86 609 100 recall_at_3 0.976744 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_50_100kb 86 609 100 recall_at_5 0.988372 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_50_100kb 86 609 100 mrr 0.891214 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_50_100kb 86 609 100 auroc 0.925521 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_50_100kb 86 609 100 auprc 0.673639 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_100_500kb 103 1178 133 recall_at_1 0.504854 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_100_500kb 103 1178 133 recall_at_3 0.660194 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_100_500kb 103 1178 133 recall_at_5 0.718447 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_100_500kb 103 1178 133 mrr 0.617089 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_100_500kb 103 1178 133 auroc 0.734856 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_100_500kb 103 1178 133 auprc 0.421866 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_500kb_1mb 56 844 71 recall_at_1 0.125000 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_500kb_1mb 56 844 71 recall_at_3 0.357143 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_500kb_1mb 56 844 71 recall_at_5 0.464286 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_500kb_1mb 56 844 71 mrr 0.295293 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_500kb_1mb 56 844 71 auroc 0.504838 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + chromosome_fold_5 train distance_500kb_1mb 56 844 71 auprc 0.136776 l2 0.001 False very_high_confidence 7631 76 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test all_labeled 122 1433 155 recall_at_1 0.663934 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test all_labeled 122 1433 155 recall_at_3 0.827869 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test all_labeled 122 1433 155 recall_at_5 0.860656 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test all_labeled 122 1433 155 mrr 0.762454 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test all_labeled 122 1433 155 auroc 0.806033 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test all_labeled 122 1433 155 auprc 0.555696 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test positive_target_nearest 63 660 85 recall_at_1 0.920635 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test positive_target_nearest 63 660 85 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test positive_target_nearest 63 660 85 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test positive_target_nearest 63 660 85 mrr 0.960317 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test positive_target_nearest 63 660 85 auroc 0.920409 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test positive_target_nearest 63 660 85 auprc 0.772156 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test positive_target_non_nearest 75 975 108 recall_at_1 0.493333 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test positive_target_non_nearest 75 975 108 recall_at_3 0.720000 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test positive_target_non_nearest 75 975 108 recall_at_5 0.773333 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test positive_target_non_nearest 75 975 108 mrr 0.633591 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test positive_target_non_nearest 75 975 108 auroc 0.730488 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test positive_target_non_nearest 75 975 108 auprc 0.415921 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test positive_target_nearest_only 47 458 47 recall_at_1 0.936170 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test positive_target_nearest_only 47 458 47 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test positive_target_nearest_only 47 458 47 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test positive_target_nearest_only 47 458 47 mrr 0.968085 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test positive_target_nearest_only 47 458 47 auroc 0.986282 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test positive_target_nearest_only 47 458 47 auprc 0.844765 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test positive_target_non_nearest_only 59 773 70 recall_at_1 0.389831 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test positive_target_non_nearest_only 59 773 70 recall_at_3 0.644068 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test positive_target_non_nearest_only 59 773 70 recall_at_5 0.711864 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test positive_target_non_nearest_only 59 773 70 mrr 0.551175 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test positive_target_non_nearest_only 59 773 70 auroc 0.672587 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test positive_target_non_nearest_only 59 773 70 auprc 0.282079 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_0_10kb 29 446 33 recall_at_1 0.896552 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_0_10kb 29 446 33 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_0_10kb 29 446 33 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_0_10kb 29 446 33 mrr 0.948276 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_0_10kb 29 446 33 auroc 0.958618 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_0_10kb 29 446 33 auprc 0.811170 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_10_50kb 37 389 54 recall_at_1 0.756757 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_10_50kb 37 389 54 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_10_50kb 37 389 54 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_10_50kb 37 389 54 mrr 0.878378 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_10_50kb 37 389 54 auroc 0.887452 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_10_50kb 37 389 54 auprc 0.655640 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_50_100kb 24 178 36 recall_at_1 0.916667 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_50_100kb 24 178 36 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_50_100kb 24 178 36 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_50_100kb 24 178 36 mrr 0.951389 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_50_100kb 24 178 36 auroc 0.912167 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_50_100kb 24 178 36 auprc 0.849202 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_100_500kb 34 494 54 recall_at_1 0.441176 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_100_500kb 34 494 54 recall_at_3 0.588235 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_100_500kb 34 494 54 recall_at_5 0.647059 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_100_500kb 34 494 54 mrr 0.555844 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_100_500kb 34 494 54 auroc 0.686574 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_100_500kb 34 494 54 auprc 0.386628 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_500kb_1mb 16 196 27 recall_at_1 0.312500 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_500kb_1mb 16 196 27 recall_at_3 0.562500 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_500kb_1mb 16 196 27 recall_at_5 0.687500 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_500kb_1mb 16 196 27 mrr 0.486706 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_500kb_1mb 16 196 27 auroc 0.534298 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout test distance_500kb_1mb 16 196 27 auprc 0.257061 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train all_labeled 5351 38108 427 recall_at_1 0.056438 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train all_labeled 5351 38108 427 recall_at_3 0.065408 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train all_labeled 5351 38108 427 recall_at_5 0.067651 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train all_labeled 5351 38108 427 mrr 0.061768 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train all_labeled 5351 38108 427 auroc 0.856102 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train all_labeled 5351 38108 427 auprc 0.190493 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train positive_target_nearest 255 1798 271 recall_at_1 0.972549 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train positive_target_nearest 255 1798 271 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train positive_target_nearest 255 1798 271 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train positive_target_nearest 255 1798 271 mrr 0.985621 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train positive_target_nearest 255 1798 271 auroc 0.976920 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train positive_target_nearest 255 1798 271 auprc 0.924220 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train positive_target_non_nearest 165 2071 186 recall_at_1 0.406061 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train positive_target_non_nearest 165 2071 186 recall_at_3 0.660606 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train positive_target_non_nearest 165 2071 186 recall_at_5 0.733333 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train positive_target_non_nearest 165 2071 186 mrr 0.561743 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train positive_target_non_nearest 165 2071 186 auroc 0.710122 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train positive_target_non_nearest 165 2071 186 auprc 0.328394 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train positive_target_nearest_only 241 1624 241 recall_at_1 0.975104 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train positive_target_nearest_only 241 1624 241 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train positive_target_nearest_only 241 1624 241 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train positive_target_nearest_only 241 1624 241 mrr 0.986860 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train positive_target_nearest_only 241 1624 241 auroc 0.990417 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train positive_target_nearest_only 241 1624 241 auprc 0.947867 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train positive_target_non_nearest_only 151 1897 156 recall_at_1 0.357616 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train positive_target_non_nearest_only 151 1897 156 recall_at_3 0.629139 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train positive_target_non_nearest_only 151 1897 156 recall_at_5 0.708609 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train positive_target_non_nearest_only 151 1897 156 mrr 0.524421 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train positive_target_non_nearest_only 151 1897 156 auroc 0.683545 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train positive_target_non_nearest_only 151 1897 156 auprc 0.260114 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_0_10kb 96 908 101 recall_at_1 0.979167 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_0_10kb 96 908 101 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_0_10kb 96 908 101 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_0_10kb 96 908 101 mrr 0.987847 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_0_10kb 96 908 101 auroc 0.982038 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_0_10kb 96 908 101 auprc 0.946542 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_10_50kb 137 1102 146 recall_at_1 0.905109 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_10_50kb 137 1102 146 recall_at_3 0.970803 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_10_50kb 137 1102 146 recall_at_5 0.992701 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_10_50kb 137 1102 146 mrr 0.943431 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_10_50kb 137 1102 146 auroc 0.967953 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_10_50kb 137 1102 146 auprc 0.860752 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_50_100kb 64 414 69 recall_at_1 0.812500 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_50_100kb 64 414 69 recall_at_3 0.984375 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_50_100kb 64 414 69 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_50_100kb 64 414 69 mrr 0.893750 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_50_100kb 64 414 69 auroc 0.937576 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_50_100kb 64 414 69 auprc 0.691672 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_100_500kb 79 727 92 recall_at_1 0.506329 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_100_500kb 79 727 92 recall_at_3 0.734177 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_100_500kb 79 727 92 recall_at_5 0.772152 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_100_500kb 79 727 92 mrr 0.645282 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_100_500kb 79 727 92 auroc 0.731359 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_100_500kb 79 727 92 auprc 0.440799 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_500kb_1mb 44 738 49 recall_at_1 0.045455 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_500kb_1mb 44 738 49 recall_at_3 0.272727 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_500kb_1mb 44 738 49 recall_at_5 0.386364 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_500kb_1mb 44 738 49 mrr 0.212987 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_500kb_1mb 44 738 49 auroc 0.408874 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout train distance_500kb_1mb 44 738 49 auprc 0.062730 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val all_labeled 72 781 82 recall_at_1 0.708333 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val all_labeled 72 781 82 recall_at_3 0.847222 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val all_labeled 72 781 82 recall_at_5 0.888889 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val all_labeled 72 781 82 mrr 0.798076 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val all_labeled 72 781 82 auroc 0.889058 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val all_labeled 72 781 82 auprc 0.660906 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val positive_target_nearest 43 368 51 recall_at_1 0.976744 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val positive_target_nearest 43 368 51 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val positive_target_nearest 43 368 51 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val positive_target_nearest 43 368 51 mrr 0.988372 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val positive_target_nearest 43 368 51 auroc 0.961341 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val positive_target_nearest 43 368 51 auprc 0.870717 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val positive_target_non_nearest 37 494 47 recall_at_1 0.459459 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val positive_target_non_nearest 37 494 47 recall_at_3 0.702703 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val positive_target_non_nearest 37 494 47 recall_at_5 0.783784 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val positive_target_non_nearest 37 494 47 mrr 0.620580 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val positive_target_non_nearest 37 494 47 auroc 0.817316 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val positive_target_non_nearest 37 494 47 auprc 0.491582 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val positive_target_nearest_only 35 287 35 recall_at_1 0.971429 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val positive_target_nearest_only 35 287 35 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val positive_target_nearest_only 35 287 35 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val positive_target_nearest_only 35 287 35 mrr 0.985714 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val positive_target_nearest_only 35 287 35 auroc 0.991156 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val positive_target_nearest_only 35 287 35 auprc 0.938527 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val positive_target_non_nearest_only 29 413 31 recall_at_1 0.310345 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val positive_target_non_nearest_only 29 413 31 recall_at_3 0.620690 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val positive_target_non_nearest_only 29 413 31 recall_at_5 0.724138 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val positive_target_non_nearest_only 29 413 31 mrr 0.515912 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val positive_target_non_nearest_only 29 413 31 auroc 0.779767 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val positive_target_non_nearest_only 29 413 31 auprc 0.308415 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_0_10kb 23 249 26 recall_at_1 0.956522 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_0_10kb 23 249 26 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_0_10kb 23 249 26 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_0_10kb 23 249 26 mrr 0.978261 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_0_10kb 23 249 26 auroc 0.949983 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_0_10kb 23 249 26 auprc 0.882078 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_10_50kb 18 154 23 recall_at_1 0.777778 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_10_50kb 18 154 23 recall_at_3 1.000000 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_10_50kb 18 154 23 recall_at_5 1.000000 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_10_50kb 18 154 23 mrr 0.879630 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_10_50kb 18 154 23 auroc 0.946233 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_10_50kb 18 154 23 auprc 0.770125 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_50_100kb 18 180 21 recall_at_1 0.722222 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_50_100kb 18 180 21 recall_at_3 0.944444 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_50_100kb 18 180 21 recall_at_5 0.944444 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_50_100kb 18 180 21 mrr 0.837607 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_50_100kb 18 180 21 auroc 0.954477 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_50_100kb 18 180 21 auprc 0.624819 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_100_500kb 13 179 16 recall_at_1 0.384615 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_100_500kb 13 179 16 recall_at_3 0.538462 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_100_500kb 13 179 16 recall_at_5 0.769231 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_100_500kb 13 179 16 mrr 0.534615 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_100_500kb 13 179 16 auroc 0.733896 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_100_500kb 13 179 16 auprc 0.301724 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_500kb_1mb 6 106 8 recall_at_1 0.333333 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_500kb_1mb 6 106 8 recall_at_3 0.333333 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_500kb_1mb 6 106 8 recall_at_5 0.333333 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_500kb_1mb 6 106 8 mrr 0.405754 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_500kb_1mb 6 106 8 auroc 0.623724 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout val distance_500kb_1mb 6 106 8 auprc 0.308892 l2 0.001 False very_high_confidence 8914 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test all_labeled 1205 9430 155 recall_at_1 0.067220 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test all_labeled 1205 9430 155 recall_at_3 0.083817 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test all_labeled 1205 9430 155 recall_at_5 0.087137 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test all_labeled 1205 9430 155 mrr 0.077181 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test all_labeled 1205 9430 155 auroc 0.807574 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test all_labeled 1205 9430 155 auprc 0.196673 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test positive_target_nearest 63 660 85 recall_at_1 0.920635 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test positive_target_nearest 63 660 85 recall_at_3 1.000000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test positive_target_nearest 63 660 85 recall_at_5 1.000000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test positive_target_nearest 63 660 85 mrr 0.960317 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test positive_target_nearest 63 660 85 auroc 0.922476 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test positive_target_nearest 63 660 85 auprc 0.790425 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test positive_target_non_nearest 75 975 108 recall_at_1 0.493333 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test positive_target_non_nearest 75 975 108 recall_at_3 0.720000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test positive_target_non_nearest 75 975 108 recall_at_5 0.773333 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test positive_target_non_nearest 75 975 108 mrr 0.633369 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test positive_target_non_nearest 75 975 108 auroc 0.728972 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test positive_target_non_nearest 75 975 108 auprc 0.409845 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test positive_target_nearest_only 47 458 47 recall_at_1 0.936170 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test positive_target_nearest_only 47 458 47 recall_at_3 1.000000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test positive_target_nearest_only 47 458 47 recall_at_5 1.000000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test positive_target_nearest_only 47 458 47 mrr 0.968085 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test positive_target_nearest_only 47 458 47 auroc 0.988559 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test positive_target_nearest_only 47 458 47 auprc 0.870704 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test positive_target_non_nearest_only 59 773 70 recall_at_1 0.389831 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test positive_target_non_nearest_only 59 773 70 recall_at_3 0.644068 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test positive_target_non_nearest_only 59 773 70 recall_at_5 0.711864 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test positive_target_non_nearest_only 59 773 70 mrr 0.550892 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test positive_target_non_nearest_only 59 773 70 auroc 0.671063 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test positive_target_non_nearest_only 59 773 70 auprc 0.272753 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_0_10kb 29 446 33 recall_at_1 0.896552 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_0_10kb 29 446 33 recall_at_3 1.000000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_0_10kb 29 446 33 recall_at_5 1.000000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_0_10kb 29 446 33 mrr 0.948276 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_0_10kb 29 446 33 auroc 0.962066 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_0_10kb 29 446 33 auprc 0.823743 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_10_50kb 37 389 54 recall_at_1 0.783784 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_10_50kb 37 389 54 recall_at_3 1.000000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_10_50kb 37 389 54 recall_at_5 1.000000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_10_50kb 37 389 54 mrr 0.891892 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_10_50kb 37 389 54 auroc 0.888889 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_10_50kb 37 389 54 auprc 0.665478 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_50_100kb 24 178 36 recall_at_1 0.916667 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_50_100kb 24 178 36 recall_at_3 1.000000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_50_100kb 24 178 36 recall_at_5 1.000000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_50_100kb 24 178 36 mrr 0.951389 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_50_100kb 24 178 36 auroc 0.915102 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_50_100kb 24 178 36 auprc 0.855289 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_100_500kb 34 494 54 recall_at_1 0.441176 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_100_500kb 34 494 54 recall_at_3 0.588235 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_100_500kb 34 494 54 recall_at_5 0.647059 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_100_500kb 34 494 54 mrr 0.555354 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_100_500kb 34 494 54 auroc 0.684175 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_100_500kb 34 494 54 auprc 0.376352 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_500kb_1mb 16 196 27 recall_at_1 0.250000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_500kb_1mb 16 196 27 recall_at_3 0.562500 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_500kb_1mb 16 196 27 recall_at_5 0.687500 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_500kb_1mb 16 196 27 mrr 0.455456 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_500kb_1mb 16 196 27 auroc 0.520710 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced test distance_500kb_1mb 16 196 27 auprc 0.248631 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train all_labeled 3641 25911 427 recall_at_1 0.083768 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train all_labeled 3641 25911 427 recall_at_3 0.096127 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train all_labeled 3641 25911 427 recall_at_5 0.099698 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train all_labeled 3641 25911 427 mrr 0.091188 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train all_labeled 3641 25911 427 auroc 0.855208 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train all_labeled 3641 25911 427 auprc 0.243728 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train positive_target_nearest 255 1798 271 recall_at_1 0.984314 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train positive_target_nearest 255 1798 271 recall_at_3 1.000000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train positive_target_nearest 255 1798 271 recall_at_5 1.000000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train positive_target_nearest 255 1798 271 mrr 0.991503 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train positive_target_nearest 255 1798 271 auroc 0.979286 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train positive_target_nearest 255 1798 271 auprc 0.936865 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train positive_target_non_nearest 165 2071 186 recall_at_1 0.412121 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train positive_target_non_nearest 165 2071 186 recall_at_3 0.660606 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train positive_target_non_nearest 165 2071 186 recall_at_5 0.739394 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train positive_target_non_nearest 165 2071 186 mrr 0.564740 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train positive_target_non_nearest 165 2071 186 auroc 0.710487 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train positive_target_non_nearest 165 2071 186 auprc 0.327019 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train positive_target_nearest_only 241 1624 241 recall_at_1 0.983402 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train positive_target_nearest_only 241 1624 241 recall_at_3 1.000000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train positive_target_nearest_only 241 1624 241 recall_at_5 1.000000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train positive_target_nearest_only 241 1624 241 mrr 0.991010 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train positive_target_nearest_only 241 1624 241 auroc 0.992487 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train positive_target_nearest_only 241 1624 241 auprc 0.959596 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train positive_target_non_nearest_only 151 1897 156 recall_at_1 0.357616 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train positive_target_non_nearest_only 151 1897 156 recall_at_3 0.629139 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train positive_target_non_nearest_only 151 1897 156 recall_at_5 0.715232 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train positive_target_non_nearest_only 151 1897 156 mrr 0.524385 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train positive_target_non_nearest_only 151 1897 156 auroc 0.682727 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train positive_target_non_nearest_only 151 1897 156 auprc 0.256136 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_0_10kb 96 908 101 recall_at_1 0.989583 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_0_10kb 96 908 101 recall_at_3 1.000000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_0_10kb 96 908 101 recall_at_5 1.000000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_0_10kb 96 908 101 mrr 0.993056 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_0_10kb 96 908 101 auroc 0.984541 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_0_10kb 96 908 101 auprc 0.959999 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_10_50kb 137 1102 146 recall_at_1 0.912409 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_10_50kb 137 1102 146 recall_at_3 0.985401 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_10_50kb 137 1102 146 recall_at_5 1.000000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_10_50kb 137 1102 146 mrr 0.948540 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_10_50kb 137 1102 146 auroc 0.969844 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_10_50kb 137 1102 146 auprc 0.872787 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_50_100kb 64 414 69 recall_at_1 0.796875 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_50_100kb 64 414 69 recall_at_3 0.984375 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_50_100kb 64 414 69 recall_at_5 1.000000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_50_100kb 64 414 69 mrr 0.885938 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_50_100kb 64 414 69 auroc 0.939761 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_50_100kb 64 414 69 auprc 0.688488 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_100_500kb 79 727 92 recall_at_1 0.544304 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_100_500kb 79 727 92 recall_at_3 0.721519 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_100_500kb 79 727 92 recall_at_5 0.772152 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_100_500kb 79 727 92 mrr 0.663063 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_100_500kb 79 727 92 auroc 0.735724 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_100_500kb 79 727 92 auprc 0.444987 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_500kb_1mb 44 738 49 recall_at_1 0.045455 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_500kb_1mb 44 738 49 recall_at_3 0.250000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_500kb_1mb 44 738 49 recall_at_5 0.386364 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_500kb_1mb 44 738 49 mrr 0.210230 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_500kb_1mb 44 738 49 auroc 0.402387 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced train distance_500kb_1mb 44 738 49 auprc 0.062230 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val all_labeled 699 4981 82 recall_at_1 0.072961 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val all_labeled 699 4981 82 recall_at_3 0.087268 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val all_labeled 699 4981 82 recall_at_5 0.091559 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val all_labeled 699 4981 82 mrr 0.082204 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val all_labeled 699 4981 82 auroc 0.889933 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val all_labeled 699 4981 82 auprc 0.288159 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val positive_target_nearest 43 368 51 recall_at_1 0.976744 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val positive_target_nearest 43 368 51 recall_at_3 1.000000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val positive_target_nearest 43 368 51 recall_at_5 1.000000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val positive_target_nearest 43 368 51 mrr 0.988372 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val positive_target_nearest 43 368 51 auroc 0.962887 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val positive_target_nearest 43 368 51 auprc 0.881605 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val positive_target_non_nearest 37 494 47 recall_at_1 0.459459 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val positive_target_non_nearest 37 494 47 recall_at_3 0.702703 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val positive_target_non_nearest 37 494 47 recall_at_5 0.783784 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val positive_target_non_nearest 37 494 47 mrr 0.620547 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val positive_target_non_nearest 37 494 47 auroc 0.824218 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val positive_target_non_nearest 37 494 47 auprc 0.489972 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val positive_target_nearest_only 35 287 35 recall_at_1 0.971429 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val positive_target_nearest_only 35 287 35 recall_at_3 1.000000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val positive_target_nearest_only 35 287 35 recall_at_5 1.000000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val positive_target_nearest_only 35 287 35 mrr 0.985714 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val positive_target_nearest_only 35 287 35 auroc 0.992971 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val positive_target_nearest_only 35 287 35 auprc 0.949584 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val positive_target_non_nearest_only 29 413 31 recall_at_1 0.310345 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val positive_target_non_nearest_only 29 413 31 recall_at_3 0.620690 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val positive_target_non_nearest_only 29 413 31 recall_at_5 0.724138 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val positive_target_non_nearest_only 29 413 31 mrr 0.515871 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val positive_target_non_nearest_only 29 413 31 auroc 0.790323 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val positive_target_non_nearest_only 29 413 31 auprc 0.310254 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_0_10kb 23 249 26 recall_at_1 0.956522 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_0_10kb 23 249 26 recall_at_3 1.000000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_0_10kb 23 249 26 recall_at_5 1.000000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_0_10kb 23 249 26 mrr 0.978261 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_0_10kb 23 249 26 auroc 0.952052 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_0_10kb 23 249 26 auprc 0.892821 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_10_50kb 18 154 23 recall_at_1 0.777778 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_10_50kb 18 154 23 recall_at_3 1.000000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_10_50kb 18 154 23 recall_at_5 1.000000 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_10_50kb 18 154 23 mrr 0.879630 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_10_50kb 18 154 23 auroc 0.947229 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_10_50kb 18 154 23 auprc 0.758115 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_50_100kb 18 180 21 recall_at_1 0.722222 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_50_100kb 18 180 21 recall_at_3 0.944444 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_50_100kb 18 180 21 recall_at_5 0.944444 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_50_100kb 18 180 21 mrr 0.837607 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_50_100kb 18 180 21 auroc 0.954477 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_50_100kb 18 180 21 auprc 0.626235 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_100_500kb 13 179 16 recall_at_1 0.384615 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_100_500kb 13 179 16 recall_at_3 0.538462 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_100_500kb 13 179 16 recall_at_5 0.769231 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_100_500kb 13 179 16 mrr 0.537821 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_100_500kb 13 179 16 auroc 0.749617 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_100_500kb 13 179 16 auprc 0.313703 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_500kb_1mb 6 106 8 recall_at_1 0.333333 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_500kb_1mb 6 106 8 recall_at_3 0.333333 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_500kb_1mb 6 106 8 recall_at_5 0.333333 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_500kb_1mb 6 106 8 mrr 0.398611 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_500kb_1mb 6 106 8 auroc 0.610969 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 + gene_holdout_rebalanced val distance_500kb_1mb 6 106 8 auprc 0.304858 l2 0.001 False very_high_confidence 5975 71 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test all_labeled 819 5961 85 recall_at_1 0.073260 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test all_labeled 819 5961 85 recall_at_3 0.080586 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test all_labeled 819 5961 85 recall_at_5 0.080586 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test all_labeled 819 5961 85 mrr 0.077952 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test all_labeled 819 5961 85 auroc 0.858135 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test all_labeled 819 5961 85 auprc 0.242862 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test positive_target_nearest 50 417 58 recall_at_1 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test positive_target_nearest 50 417 58 recall_at_3 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test positive_target_nearest 50 417 58 recall_at_5 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test positive_target_nearest 50 417 58 mrr 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test positive_target_nearest 50 417 58 auroc 0.928537 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test positive_target_nearest 50 417 58 auprc 0.860939 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test positive_target_non_nearest 32 550 41 recall_at_1 0.500000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test positive_target_non_nearest 32 550 41 recall_at_3 0.687500 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test positive_target_non_nearest 32 550 41 recall_at_5 0.687500 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test positive_target_non_nearest 32 550 41 mrr 0.620073 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test positive_target_non_nearest 32 550 41 auroc 0.736116 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test positive_target_non_nearest 32 550 41 auprc 0.407158 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test positive_target_nearest_only 44 290 44 recall_at_1 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test positive_target_nearest_only 44 290 44 recall_at_3 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test positive_target_nearest_only 44 290 44 recall_at_5 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test positive_target_nearest_only 44 290 44 mrr 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test positive_target_nearest_only 44 290 44 auroc 0.986327 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test positive_target_nearest_only 44 290 44 auprc 0.941186 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test positive_target_non_nearest_only 26 423 27 recall_at_1 0.384615 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test positive_target_non_nearest_only 26 423 27 recall_at_3 0.615385 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test positive_target_non_nearest_only 26 423 27 recall_at_5 0.615385 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test positive_target_non_nearest_only 26 423 27 mrr 0.532398 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test positive_target_non_nearest_only 26 423 27 auroc 0.730827 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test positive_target_non_nearest_only 26 423 27 auprc 0.325036 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_0_10kb 20 203 24 recall_at_1 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_0_10kb 20 203 24 recall_at_3 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_0_10kb 20 203 24 recall_at_5 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_0_10kb 20 203 24 mrr 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_0_10kb 20 203 24 auroc 0.939479 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_0_10kb 20 203 24 auprc 0.884149 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_10_50kb 30 342 35 recall_at_1 0.933333 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_10_50kb 30 342 35 recall_at_3 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_10_50kb 30 342 35 recall_at_5 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_10_50kb 30 342 35 mrr 0.966667 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_10_50kb 30 342 35 auroc 0.928525 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_10_50kb 30 342 35 auprc 0.807670 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_50_100kb 9 44 9 recall_at_1 0.777778 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_50_100kb 9 44 9 recall_at_3 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_50_100kb 9 44 9 recall_at_5 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_50_100kb 9 44 9 mrr 0.888889 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_50_100kb 9 44 9 auroc 0.873016 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_50_100kb 9 44 9 auprc 0.641216 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_100_500kb 14 178 20 recall_at_1 0.642857 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_100_500kb 14 178 20 recall_at_3 0.785714 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_100_500kb 14 178 20 recall_at_5 0.785714 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_100_500kb 14 178 20 mrr 0.731539 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_100_500kb 14 178 20 auroc 0.756013 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_100_500kb 14 178 20 auprc 0.490055 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_500kb_1mb 9 238 13 recall_at_1 0.222222 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_500kb_1mb 9 238 13 recall_at_3 0.222222 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_500kb_1mb 9 238 13 recall_at_5 0.222222 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_500kb_1mb 9 238 13 mrr 0.288977 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_500kb_1mb 9 238 13 auroc 0.419487 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout test distance_500kb_1mb 9 238 13 auprc 0.193850 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train all_labeled 3913 28117 485 recall_at_1 0.081268 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train all_labeled 3913 28117 485 recall_at_3 0.095323 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train all_labeled 3913 28117 485 recall_at_5 0.099668 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train all_labeled 3913 28117 485 mrr 0.089678 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train all_labeled 3913 28117 485 auroc 0.854545 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train all_labeled 3913 28117 485 auprc 0.243243 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train positive_target_nearest 254 1883 287 recall_at_1 0.968504 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train positive_target_nearest 254 1883 287 recall_at_3 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train positive_target_nearest 254 1883 287 recall_at_5 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train positive_target_nearest 254 1883 287 mrr 0.983596 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train positive_target_nearest 254 1883 287 auroc 0.968689 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train positive_target_nearest 254 1883 287 auprc 0.901606 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train positive_target_non_nearest 212 2611 259 recall_at_1 0.462264 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train positive_target_non_nearest 212 2611 259 recall_at_3 0.693396 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train positive_target_non_nearest 212 2611 259 recall_at_5 0.773585 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train positive_target_non_nearest 212 2611 259 mrr 0.604143 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train positive_target_non_nearest 212 2611 259 auroc 0.741992 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train positive_target_non_nearest 212 2611 259 auprc 0.388180 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train positive_target_nearest_only 226 1583 226 recall_at_1 0.973451 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train positive_target_nearest_only 226 1583 226 recall_at_3 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train positive_target_nearest_only 226 1583 226 recall_at_5 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train positive_target_nearest_only 226 1583 226 mrr 0.985988 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train positive_target_nearest_only 226 1583 226 auroc 0.989566 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train positive_target_nearest_only 226 1583 226 auprc 0.941656 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train positive_target_non_nearest_only 184 2311 198 recall_at_1 0.391304 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train positive_target_non_nearest_only 184 2311 198 recall_at_3 0.646739 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train positive_target_non_nearest_only 184 2311 198 recall_at_5 0.739130 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train positive_target_non_nearest_only 184 2311 198 mrr 0.549339 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train positive_target_non_nearest_only 184 2311 198 auroc 0.699891 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train positive_target_non_nearest_only 184 2311 198 auprc 0.287102 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_0_10kb 98 1023 106 recall_at_1 0.969388 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_0_10kb 98 1023 106 recall_at_3 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_0_10kb 98 1023 106 recall_at_5 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_0_10kb 98 1023 106 mrr 0.982993 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_0_10kb 98 1023 106 auroc 0.976431 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_0_10kb 98 1023 106 auprc 0.931982 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_10_50kb 137 1111 159 recall_at_1 0.890511 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_10_50kb 137 1111 159 recall_at_3 0.985401 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_10_50kb 137 1111 159 recall_at_5 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_10_50kb 137 1111 159 mrr 0.938808 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_10_50kb 137 1111 159 auroc 0.954482 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_10_50kb 137 1111 159 auprc 0.830813 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_50_100kb 82 624 99 recall_at_1 0.829268 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_50_100kb 82 624 99 recall_at_3 0.975610 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_50_100kb 82 624 99 recall_at_5 0.987805 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_50_100kb 82 624 99 mrr 0.900523 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_50_100kb 82 624 99 auroc 0.933545 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_50_100kb 82 624 99 auprc 0.679807 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_100_500kb 97 1043 124 recall_at_1 0.505155 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_100_500kb 97 1043 124 recall_at_3 0.711340 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_100_500kb 97 1043 124 recall_at_5 0.783505 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_100_500kb 97 1043 124 mrr 0.631964 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_100_500kb 97 1043 124 auroc 0.737372 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_100_500kb 97 1043 124 auprc 0.406892 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_500kb_1mb 54 761 66 recall_at_1 0.129630 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_500kb_1mb 54 761 66 recall_at_3 0.351852 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_500kb_1mb 54 761 66 recall_at_5 0.481481 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_500kb_1mb 54 761 66 mrr 0.300648 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_500kb_1mb 54 761 66 auroc 0.523131 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout train distance_500kb_1mb 54 761 66 auprc 0.137079 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val all_labeled 813 6244 94 recall_at_1 0.078721 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val all_labeled 813 6244 94 recall_at_3 0.093481 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val all_labeled 813 6244 94 recall_at_5 0.093481 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val all_labeled 813 6244 94 mrr 0.086878 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val all_labeled 813 6244 94 auroc 0.864062 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val all_labeled 813 6244 94 auprc 0.304738 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val positive_target_nearest 57 526 62 recall_at_1 0.947368 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val positive_target_nearest 57 526 62 recall_at_3 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val positive_target_nearest 57 526 62 recall_at_5 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val positive_target_nearest 57 526 62 mrr 0.973684 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val positive_target_nearest 57 526 62 auroc 0.987903 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val positive_target_nearest 57 526 62 auprc 0.892055 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val positive_target_non_nearest 33 379 41 recall_at_1 0.424242 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val positive_target_non_nearest 33 379 41 recall_at_3 0.696970 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val positive_target_non_nearest 33 379 41 recall_at_5 0.696970 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val positive_target_non_nearest 33 379 41 mrr 0.579754 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val positive_target_non_nearest 33 379 41 auroc 0.710348 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val positive_target_non_nearest 33 379 41 auprc 0.396117 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val positive_target_nearest_only 53 496 53 recall_at_1 0.943396 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val positive_target_nearest_only 53 496 53 recall_at_3 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val positive_target_nearest_only 53 496 53 recall_at_5 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val positive_target_nearest_only 53 496 53 mrr 0.971698 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val positive_target_nearest_only 53 496 53 auroc 0.990630 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val positive_target_nearest_only 53 496 53 auprc 0.899348 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val positive_target_non_nearest_only 29 349 32 recall_at_1 0.344828 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val positive_target_non_nearest_only 29 349 32 recall_at_3 0.655172 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val positive_target_non_nearest_only 29 349 32 recall_at_5 0.655172 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val positive_target_non_nearest_only 29 349 32 mrr 0.521789 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val positive_target_non_nearest_only 29 349 32 auroc 0.645209 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val positive_target_non_nearest_only 29 349 32 auprc 0.273803 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_0_10kb 30 377 30 recall_at_1 0.933333 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_0_10kb 30 377 30 recall_at_3 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_0_10kb 30 377 30 recall_at_5 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_0_10kb 30 377 30 mrr 0.966667 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_0_10kb 30 377 30 auroc 0.995389 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_0_10kb 30 377 30 auprc 0.909276 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_10_50kb 25 192 29 recall_at_1 0.720000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_10_50kb 25 192 29 recall_at_3 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_10_50kb 25 192 29 recall_at_5 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_10_50kb 25 192 29 mrr 0.853333 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_10_50kb 25 192 29 auroc 0.954517 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_10_50kb 25 192 29 auprc 0.701181 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_50_100kb 15 104 18 recall_at_1 0.933333 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_50_100kb 15 104 18 recall_at_3 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_50_100kb 15 104 18 recall_at_5 1.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_50_100kb 15 104 18 mrr 0.966667 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_50_100kb 15 104 18 auroc 0.987726 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_50_100kb 15 104 18 auprc 0.947861 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_100_500kb 15 179 18 recall_at_1 0.400000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_100_500kb 15 179 18 recall_at_3 0.533333 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_100_500kb 15 179 18 recall_at_5 0.533333 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_100_500kb 15 179 18 mrr 0.500273 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_100_500kb 15 179 18 auroc 0.670117 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_100_500kb 15 179 18 auprc 0.392709 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_500kb_1mb 3 41 5 recall_at_1 0.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_500kb_1mb 3 41 5 recall_at_3 0.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_500kb_1mb 3 41 5 recall_at_5 0.000000 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_500kb_1mb 3 41 5 mrr 0.098148 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_500kb_1mb 3 41 5 auroc 0.122222 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 +enhancer_cluster_holdout val distance_500kb_1mb 3 41 5 auprc 0.082724 l2 0.001 False very_high_confidence 6550 69 logistic_re2g_extended_vhighconf_c0001 0.1.0 diff --git a/results/s2t/gasperini_gse120861/learned_logistic_recomputed_abc_c00003_metrics.csv b/results/s2t/gasperini_gse120861/learned_logistic_recomputed_abc_c00003_metrics.csv new file mode 100644 index 0000000000000000000000000000000000000000..9d418f2c5620e5d44b736a66b17b2a0938601595 --- /dev/null +++ b/results/s2t/gasperini_gse120861/learned_logistic_recomputed_abc_c00003_metrics.csv @@ -0,0 +1,151 @@ +split_family,split,n_regions,n_pairs,n_positive,metric,value,logistic_penalty,logistic_c,tuned,tune_metric,training_label_policy,n_fit_pairs,n_fit_positive,model_name,model_version 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+T2S,low_rank_oracle_projection,0.1.0,oracle_upper_bound,perturbation_random,4,vcc_style_approx,PTPN1,0.0961151852703326,1,30,1.0,100,9,9,0.09,0.09 diff --git a/results/t2s/vcc_2025/vcc_style_report.md b/results/t2s/vcc_2025/vcc_style_report.md new file mode 100644 index 0000000000000000000000000000000000000000..e34a3a1f125d0dbe9e1c3ff0614d2e39488a0cb9 --- /dev/null +++ b/results/t2s/vcc_2025/vcc_style_report.md @@ -0,0 +1,35 @@ +# VCC-Style T2S Metric Report + +Status: approximate held-out perturbation benchmark metrics. + +Definitions: + +- `mae`: mean absolute error over pseudobulk log2-fold-change response matrices. +- `pds`: fold-level perturbation discrimination score from L1 distances to held-out true perturbation deltas. +- `des_approx_abs_overlap`: overlap between top predicted absolute response genes and pseudobulk z-score DE-like genes. +- `des_approx_directional_overlap`: same top-set overlap, requiring matching effect direction. + +Caveat: DES here is not the official cell-level Wilcoxon/FDR VCC DES. It uses the precomputed pseudobulk response-stat table as a deterministic approximation. + +Response-stat source: `data/processed/t2s/vcc_2025/top_perturbation_response_stats.parquet` + +## Fold Mean Metrics + +| model_name | prediction_kind | metric | value | +| --- | --- | --- | --- | +| low_rank_oracle_projection | oracle_upper_bound | des_approx_abs_overlap | 0.043 | +| low_rank_oracle_projection | oracle_upper_bound | des_approx_directional_overlap | 0.043 | +| low_rank_oracle_projection | oracle_upper_bound | mae | 0.197988 | +| low_rank_oracle_projection | oracle_upper_bound | pds | 0.638444 | +| nearest_neighbor | predictive | des_approx_abs_overlap | 0.0259333 | +| nearest_neighbor | predictive | des_approx_directional_overlap | 0.0241333 | +| nearest_neighbor | predictive | mae | 0.229029 | +| nearest_neighbor | predictive | pds | 0.571111 | +| train_mean | predictive | des_approx_abs_overlap | 0.0245333 | +| train_mean | predictive | des_approx_directional_overlap | 0.0242667 | +| train_mean | predictive | mae | 0.228664 | +| train_mean | predictive | pds | 0.516667 | +| zero_delta | predictive | des_approx_abs_overlap | 0.0066 | +| zero_delta | predictive | des_approx_directional_overlap | 0 | +| zero_delta | predictive | mae | 0.228703 | +| zero_delta | predictive | pds | 0.516667 |