Datasets:
another small formatting change to readme
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README.md
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@@ -46,7 +46,7 @@ For faster loading and improved the files are stored as [parquet files](https://
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For each partition there are two main file types:
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- `_mvalues`: containing preprocessed and quality controlled DNAm M-values background corrected using [preprocessNoob](https://rdrr.io/bioc/minfi/man/preprocessNoob.html) and normalized using [BMIQ](https://rdrr.io/bioc/wateRmelon/man/BMIQ.html).
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The full list of files include:
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- `full_ontology.edgelist`: a [networkx](https://networkx.org/documentation/stable/reference/readwrite/edgelist.html) file containing the tissue/cell ontology connecting all 86 tissue and cell terms
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For each partition there are two main file types:
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- `_mvalues`: containing preprocessed and quality controlled DNAm M-values background corrected using [preprocessNoob](https://rdrr.io/bioc/minfi/man/preprocessNoob.html) and normalized using [BMIQ](https://rdrr.io/bioc/wateRmelon/man/BMIQ.html).
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- `_meta`: metadata files containing the sample id, dataset, and UBERON tissue/cell identifiers and labels. There are two columns corresponding to UBERON identifiers, one contains the most descriptive tissue or cell term, and the second contains a more general term used to create a larger training compendium. (e.g., `pericardial fat` vs. `visceral fat`).
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The full list of files include:
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- `full_ontology.edgelist`: a [networkx](https://networkx.org/documentation/stable/reference/readwrite/edgelist.html) file containing the tissue/cell ontology connecting all 86 tissue and cell terms
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