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.gitattributes

@@ -53,3 +53,5 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.jpg filter=lfs diff=lfs merge=lfs -text
 *.jpeg filter=lfs diff=lfs merge=lfs -text
 *.webp filter=lfs diff=lfs merge=lfs -text
+hg38_8k_test.jsonl filter=lfs diff=lfs merge=lfs -text
+hg38_8k_train.jsonl filter=lfs diff=lfs merge=lfs -text

hg38.py

@@ -0,0 +1,86 @@
+# Copyright 2020 The HuggingFace Datasets Authors and the current dataset script contributor.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+import json
+import os
+
+import datasets
+import pandas as pd
+
+_CITATION = """\
+CITATION 
+"""
+
+_DESCRIPTION = """\
+DESCRIPTION
+"""
+
+_HOMEPAGE = "HOMEPAGE"
+
+_LICENSE = ""
+
+
+FILES = ["hg38_8k_train.jsonl", "hg38_8k_test.jsonl"]
+
+
+task_list = [
+    "hg38_8k",
+]
+
+
+class hg38Config(datasets.BuilderConfig):
+    def __init__(self, **kwargs):
+        super().__init__(version=datasets.Version("1.0.0"), **kwargs)
+
+
+class hg38(datasets.GeneratorBasedBuilder):
+    BUILDER_CONFIGS = [
+        hg38Config(
+            name=task_name,
+        )
+        for task_name in task_list
+    ]
+
+    def _info(self):
+        return datasets.DatasetInfo(
+            description=_DESCRIPTION,
+            features=datasets.Features(
+                {
+                    "chrom":datasets.Value("string"),
+                    "start": datasets.Value("int32"),
+                    "end": datasets.Value("int32"),
+                    "seq": datasets.Value("string"),
+                }
+            ),
+            homepage=_HOMEPAGE,
+            license=_LICENSE,
+            citation=_CITATION,
+        )
+
+    def _split_generators(self, dl_manager):
+        downloaded_files = dl_manager.download(FILES)
+        return [
+            datasets.SplitGenerator(name=datasets.Split.TRAIN, gen_kwargs={"filepath": downloaded_files[0]}),
+            datasets.SplitGenerator(name=datasets.Split.TEST, gen_kwargs={"filepath": downloaded_files[1]}),
+        ]
+
+    def _generate_examples(self, filepath):
+        with open(filepath) as jsonl_file:
+            for row, line in enumerate(jsonl_file):
+                data = json.loads(line)
+                yield row, {
+                    "chrom": data["chrom"],
+                    "start": data["start"],
+                    "end": data["end"],
+                    "seq": data["seq"],
+                }

hg38_8k_test.jsonl

@@ -0,0 +1,3 @@
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+oid sha256:8a830d7b4609610df261c172744cdcf9b42b68f4861a88280803514befc83ece
+size 311056603

hg38_8k_train.jsonl

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:3140d510518af1a2303a1b90a493fb182b6cc291394dd3141330f17fafd9dfbe
+size 2799491712