"""Reading source H5 recordings, with correct cross-modal time alignment. This module owns the one piece of logic that used to be wrong: how a GelSight frame is paired with a camera frame. Two recording formats exist --------------------------- **legacy** (up to 2026-06-18) — the rig stored whatever ``self.frame`` each stream happened to hold at the 30 Hz tick, so tactile was *index*-aligned to the cameras. Because a full 8 MP MJPG decode cost ~71 ms, the tactile thread only really ran at ~8 fps, so those recordings carry both a systematic lag (~15 frames, corrected downstream by a constant shift) and ~72 % duplicated tactile frames. **timestamped** (2026-06-27 onward) — the rig writes ``gelsight//timestamps``, the true capture time of each tactile frame. We pair each camera tick with the *nearest-in-time* tactile frame, which removes the systematic lag at the source. A constant shift must NOT also be applied to these recordings, or they get corrected twice. ``TactileAlignment.needs_legacy_shift`` is the guard for exactly that. """ from __future__ import annotations from dataclasses import dataclass, field from pathlib import Path import h5py import numpy as np from .config import EXCLUDE_DATES, SIDES, WORLD_OFFSET # ── pose alignment (unchanged from the validated build_episodes_from_h5) ───── def cam_align_poses(cam_ts: np.ndarray, ot_ts, ot_pose) -> np.ndarray: """Nearest-timestamp OptiTrack pose for every camera tick.""" if ot_ts is None or len(ot_ts) == 0: return np.zeros((len(cam_ts), 7), np.float32) idx = np.clip(np.searchsorted(ot_ts, cam_ts), 0, len(ot_ts) - 1) idxm = np.clip(idx - 1, 0, len(ot_ts) - 1) pick_minus = np.abs(ot_ts[idxm] - cam_ts) < np.abs(ot_ts[idx] - cam_ts) return ot_pose[np.where(pick_minus, idxm, idx)].astype(np.float32) def find_first_valid(cam_ts, sl_ts, sr_ts) -> int: """First camera tick at which every active OptiTrack body has a sample.""" starts = [float(t[0]) for t in (sl_ts, sr_ts) if t is not None and len(t) > 0] return int(np.searchsorted(cam_ts, max(starts))) if starts else 0 def nearest_index(src_ts: np.ndarray, target_ts: np.ndarray) -> np.ndarray: """For each `target_ts`, index of the nearest entry in sorted `src_ts`.""" idx = np.clip(np.searchsorted(src_ts, target_ts), 0, len(src_ts) - 1) idxm = np.clip(idx - 1, 0, len(src_ts) - 1) pick_minus = np.abs(src_ts[idxm] - target_ts) < np.abs(src_ts[idx] - target_ts) return np.where(pick_minus, idxm, idx) @dataclass class TactileAlignment: """How camera ticks map onto GelSight frames for one side.""" side: str index_map: np.ndarray # (T,) int — gel frame index per camera tick timestamped: bool # True when per-sensor capture times existed residual_ms: np.ndarray | None # (T,) signed gel_ts - cam_ts, else None @property def needs_legacy_shift(self) -> bool: """Legacy recordings still need the constant +N frame latency shift. Timestamped recordings are already aligned here; applying a shift on top would double-correct them. """ return not self.timestamped def summary(self) -> str: if not self.timestamped: return f"{self.side}: index-aligned (legacy, needs latency shift)" r = self.residual_ms return (f"{self.side}: timestamp-aligned " f"(residual mean {r.mean():+.1f} ms, |max| {np.abs(r).max():.0f} ms)") @dataclass class EpisodeSource: """One source H5 recording, with everything the pipeline needs from it.""" path: Path task: str date: str episode: str cam_ts: np.ndarray = field(repr=False) trim: int active: list[str] world_offset: tuple[float, float, float] pose_left: np.ndarray = field(repr=False) pose_right: np.ndarray = field(repr=False) align: dict[str, TactileAlignment] = field(repr=False) @property def T(self) -> int: return len(self.cam_ts) - self.trim @property def trimmed_cam_ts(self) -> np.ndarray: return self.cam_ts[self.trim:] @property def timestamped(self) -> bool: """True when this recording carries per-sensor GelSight capture times.""" return any(a.timestamped for a in self.align.values()) def describe(self) -> str: kind = "timestamped" if self.timestamped else "legacy" lines = [f"{self.episode} [{kind}] T={self.T} trim={self.trim} active={self.active}"] lines += [" " + self.align[s].summary() for s in SIDES if s in self.align] return "\n".join(lines) def _read_body(f, name): grp = f"optitrack/{name}" if grp not in f: return None, None return f[f"{grp}/timestamps"][:], f[f"{grp}/pose"][:] def open_episode(h5_path: Path, task: str) -> EpisodeSource: """Read metadata + build the tactile alignment for one recording. Frame pixels are *not* loaded here; the encoder streams them in blocks. """ h5_path = Path(h5_path) date, episode = h5_path.parent.name, h5_path.stem offset = WORLD_OFFSET.get((task, date), (0.0, 0.0, 0.0)) with h5py.File(str(h5_path), "r") as f: cam_ts = f["timestamps"][:] sl_ts, sl_pose = _read_body(f, "sensor_left") sr_ts, sr_pose = _read_body(f, "sensor_right") active = [s for s, t in (("left", sl_ts), ("right", sr_ts)) if t is not None and len(t) > 0] trim = find_first_valid(cam_ts, sl_ts, sr_ts) if len(cam_ts) - trim <= 0: raise ValueError(f"{episode}: nothing left after trim") tcam = cam_ts[trim:] T = len(tcam) align = {} for side in SIDES: n_gel = len(f[f"gelsight/{side}/frames"]) ts_key = f"gelsight/{side}/timestamps" if ts_key in f and len(f[ts_key]) == n_gel and n_gel > 0: gel_ts = f[ts_key][:] idx = nearest_index(gel_ts, tcam) align[side] = TactileAlignment( side, idx.astype(np.int64), True, (gel_ts[idx] - tcam) * 1000.0) else: # legacy: tactile stored at the same tick index as the cameras idx = np.clip(np.arange(trim, trim + T), 0, n_gel - 1) align[side] = TactileAlignment(side, idx.astype(np.int64), False, None) pose_l = cam_align_poses(tcam, sl_ts, sl_pose).copy() pose_r = cam_align_poses(tcam, sr_ts, sr_pose).copy() for p in (pose_l, pose_r): p[:, 0] += offset[0]; p[:, 1] += offset[1]; p[:, 2] += offset[2] return EpisodeSource(h5_path, task, date, episode, cam_ts, trim, active, offset, pose_l, pose_r, align) def discover(task: str, root: Path, date=None, episodes=None) -> list[Path]: """All publishable source recordings for a task, sorted.""" paths = sorted(p for p in root.rglob("episode_*.h5") if p.parent.name not in EXCLUDE_DATES) if date: paths = [p for p in paths if p.parent.name == date] if episodes: want = set(episodes) paths = [p for p in paths if p.stem in want] return paths