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topology/logs/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600/.hydra/config.yaml

@@ -0,0 +1,150 @@
+task:
+  target: misclassification
+  positive_label: error
+  primary_metric: roc_auc
+task_name: topology_steps
+seed: 1337
+data_split: test
+base_architecture: roberta-base
+model_path: ${paths.root_dir}/data/full_models/roberta_runs_seeds/CoLa/0
+output_dir: ${paths.output_dir}/topology_steps/roberta_cola
+experiments:
+- E00
+- E01
+- E02
+- E03
+- E04
+- E05
+- E06
+- E07
+- E08
+- E09
+- E10
+- E11
+- E12
+- E13
+baselines:
+  allowed_only:
+  - msp
+  - entropy
+  msp_score: one_minus_msp
+  entropy_score: normalized_entropy
+cv:
+  outer_folds: 2
+  stratify_by: error
+inference:
+  batch_size: 8
+  device: cuda
+  torch_dtype: bfloat16
+  max_batches: 16
+attention:
+  use_post_softmax_attention: true
+  remove_padding: true
+  keep_cls: true
+  keep_sep: true
+  symmetrization: max
+  distance: one_minus_weight
+  selected_layers:
+  - -1
+  head_mode: aggregate_all
+  aggregators:
+  - mean
+  - std
+  - max
+threshold_graph:
+  quantiles:
+  - 0.5
+  - 0.6
+  - 0.7
+  - 0.8
+  - 0.9
+patterns:
+  enabled:
+  - self
+  - previous
+  - next
+  - cls
+  - eos
+  - local_window
+  - uniform
+  local_radius: 2
+  distance: normalized_frobenius
+mst:
+  enabled_features:
+  - total_length_norm
+  - edge_mean
+  - edge_std
+  - edge_max
+  - cls_attachment
+  - cls_path_mean
+  - diameter
+  - leaf_ratio
+persistent_homology:
+  backend: mst_h0_and_graph_h1_proxy
+  maxdim: 1
+  max_death: 1.0
+  eps: 1.0e-12
+vectorized_ph:
+  grid_size: 16
+  features:
+  - betti_curve
+  - silhouette
+  silhouette_power: 1.0
+cross_head:
+  max_heads: 3
+  max_pairs: 3
+  dims:
+  - 0
+  - 1
+  distances:
+  - lightweight_summary_distance
+  threshold_quantiles:
+  - 0.6
+  - 0.8
+  - 0.9
+catboost:
+  loss_function: Logloss
+  eval_metric: AUC
+  iterations: 30
+  learning_rate: 0.02
+  depth: 3
+  l2_leaf_reg: 20.0
+  random_strength: 2.0
+  bagging_temperature: 1.0
+  auto_class_weights: Balanced
+  early_stopping_rounds: 5
+  verbose: false
+  allow_writing_files: false
+feature_selection:
+  enabled_for_final: true
+  method: catboost_importance
+  max_features: 100
+  errors_per_feature: 5
+metrics:
+  ece_bins: 10
+data:
+  _target_: src.data.text_module.TextDataModule
+  _recursive_: false
+  num_labels: 2
+  dataset:
+    _target_: src.dataset.sequence_classification.CoLa
+  batch_size: 8
+  num_workers: 0
+  pin_memory: false
+  collate_fn:
+    _target_: transformers.DataCollatorWithPadding
+    return_tensors: pt
+    padding: longest
+  tokenizer:
+    _target_: transformers.AutoTokenizer.from_pretrained
+    pretrained_model_name_or_path: ${base_architecture}
+paths:
+  root_dir: ${oc.env:PROJECT_ROOT}
+  data_dir: ${paths.root_dir}/data/
+  log_dir: ${paths.root_dir}/logs/
+  output_dir: ${hydra:runtime.output_dir}
+  work_dir: ${hydra:runtime.cwd}
+extras:
+  ignore_warnings: false
+  enforce_tags: false
+  print_config: false

topology/logs/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600/.hydra/hydra.yaml

@@ -0,0 +1,168 @@
+hydra:
+  run:
+    dir: ${paths.log_dir}/${task_name}/runs/${now:%Y-%m-%d}_${now:%H-%M-%S}_${uuid:}
+  sweep:
+    dir: ${paths.log_dir}/${task_name}/multiruns/${now:%Y-%m-%d}_${now:%H-%M-%S}_${uuid:}
+    subdir: ${hydra.job.num}
+  launcher:
+    _target_: hydra._internal.core_plugins.basic_launcher.BasicLauncher
+  sweeper:
+    _target_: hydra._internal.core_plugins.basic_sweeper.BasicSweeper
+    max_batch_size: null
+    params: null
+  help:
+    app_name: ${hydra.job.name}
+    header: '${hydra.help.app_name} is powered by Hydra.
+
+      '
+    footer: 'Powered by Hydra (https://hydra.cc)
+
+      Use --hydra-help to view Hydra specific help
+
+      '
+    template: '${hydra.help.header}
+
+      == Configuration groups ==
+
+      Compose your configuration from those groups (group=option)
+
+
+      $APP_CONFIG_GROUPS
+
+
+      == Config ==
+
+      Override anything in the config (foo.bar=value)
+
+
+      $CONFIG
+
+
+      ${hydra.help.footer}
+
+      '
+  hydra_help:
+    template: 'Hydra (${hydra.runtime.version})
+
+      See https://hydra.cc for more info.
+
+
+      == Flags ==
+
+      $FLAGS_HELP
+
+
+      == Configuration groups ==
+
+      Compose your configuration from those groups (For example, append hydra/job_logging=disabled
+      to command line)
+
+
+      $HYDRA_CONFIG_GROUPS
+
+
+      Use ''--cfg hydra'' to Show the Hydra config.
+
+      '
+    hydra_help: ???
+  hydra_logging:
+    version: 1
+    formatters:
+      simple:
+        format: '[%(asctime)s][HYDRA] %(message)s'
+    handlers:
+      console:
+        class: logging.StreamHandler
+        formatter: simple
+        stream: ext://sys.stdout
+    root:
+      level: INFO
+      handlers:
+      - console
+    loggers:
+      logging_example:
+        level: DEBUG
+    disable_existing_loggers: false
+  job_logging:
+    version: 1
+    formatters:
+      simple:
+        format: '[%(asctime)s][%(name)s][%(levelname)s] - %(message)s'
+    handlers:
+      console:
+        class: logging.StreamHandler
+        formatter: simple
+        stream: ext://sys.stdout
+      file:
+        class: logging.FileHandler
+        formatter: simple
+        filename: ${hydra.runtime.output_dir}/${task_name}.log
+    root:
+      level: INFO
+      handlers:
+      - console
+      - file
+    disable_existing_loggers: false
+  env: {}
+  mode: RUN
+  searchpath: []
+  callbacks: {}
+  output_subdir: .hydra
+  overrides:
+    hydra:
+    - hydra.mode=RUN
+    task:
+    - experiment=topology_steps/roberta_cola
+    - inference.max_batches=16
+    - cv.outer_folds=2
+    - catboost.iterations=30
+    - catboost.early_stopping_rounds=5
+    - extras.print_config=false
+  job:
+    name: run_attention_topology_steps
+    chdir: null
+    override_dirname: catboost.early_stopping_rounds=5,catboost.iterations=30,cv.outer_folds=2,experiment=topology_steps/roberta_cola,extras.print_config=false,inference.max_batches=16
+    id: ???
+    num: ???
+    config_name: topology_steps.yaml
+    env_set: {}
+    env_copy: []
+    config:
+      override_dirname:
+        kv_sep: '='
+        item_sep: ','
+        exclude_keys: []
+  runtime:
+    version: 1.3.2
+    version_base: '1.3'
+    cwd: /workspace/AdUE
+    config_sources:
+    - path: hydra.conf
+      schema: pkg
+      provider: hydra
+    - path: /workspace/AdUE/configs
+      schema: file
+      provider: main
+    - path: hydra_plugins.hydra_colorlog.conf
+      schema: pkg
+      provider: hydra-colorlog
+    - path: ''
+      schema: structured
+      provider: schema
+    output_dir: /workspace/AdUE/logs/topology_steps/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600
+    choices:
+      hydra: default
+      extras: default
+      paths: default
+      experiment: topology_steps/roberta_cola
+      data: cola
+      hydra/env: default
+      hydra/callbacks: null
+      hydra/job_logging: default
+      hydra/hydra_logging: default
+      hydra/hydra_help: default
+      hydra/help: default
+      hydra/sweeper: basic
+      hydra/launcher: basic
+      hydra/output: default
+  verbose: false

topology/logs/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600/.hydra/overrides.yaml

@@ -0,0 +1,6 @@
+- experiment=topology_steps/roberta_cola
+- inference.max_batches=16
+- cv.outer_folds=2
+- catboost.iterations=30
+- catboost.early_stopping_rounds=5
+- extras.print_config=false

topology/logs/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600/topology_steps.log

@@ -0,0 +1,2 @@
+[2026-05-11 13:59:54,260][src.data.text_module][INFO] - [rank: 0] Dataset has train/test/valid split
+[2026-05-11 13:59:54,367][src.data.text_module][INFO] - [rank: 0] Train samples: 6840 Valid samples: 1711 Test samples: 1043

topology/logs/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600/topology_steps/roberta_cola/E00_fold_metrics.csv

@@ -0,0 +1,3 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E00,MSP standalone baseline,0,1,64,64,15,15,0.745578231292517,0.3890203251722859,0.15908771043645714,0.06128636468201876
+E00,MSP standalone baseline,1,1,64,64,15,15,0.6530612244897959,0.3777026120120451,0.17553424505362947,0.10606700927019119

topology/logs/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600/topology_steps/roberta_cola/E01_fold_metrics.csv

@@ -0,0 +1,3 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E01,Normalized predictive entropy standalone baseline,0,1,64,64,15,15,0.745578231292517,0.3890203251722859,0.31158115211810106,0.3634903277934209
+E01,Normalized predictive entropy standalone baseline,1,1,64,64,15,15,0.6530612244897959,0.3777026120120451,0.38768008537164433,0.41743798645968133

topology/logs/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600/topology_steps/roberta_cola/E02_fold_metrics.csv

@@ -0,0 +1,3 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E02,MSP + entropy CatBoost baseline,0,2,64,64,15,15,0.7897959183673469,0.4613690476190476,0.24892810118057468,0.2653541582894214
+E02,MSP + entropy CatBoost baseline,1,2,64,64,15,15,0.6700680272108843,0.3318509817510332,0.24976087737105324,0.26593607921445717

topology/logs/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600/topology_steps/roberta_cola/E03_fold_metrics.csv

@@ -0,0 +1,3 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E03,V1 threshold graph topology only,0,90,64,64,15,15,0.6374149659863945,0.4505630595154567,0.24865617449214258,0.2642694618773215
+E03,V1 threshold graph topology only,1,90,64,64,15,15,0.5653061224489796,0.2659722222222222,0.25022518351778666,0.2662728885649168

topology/logs/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600/topology_steps/roberta_cola/E04_fold_metrics.csv

@@ -0,0 +1,3 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E04,V1 threshold graph topology only; no MSP/entropy features,0,90,64,64,15,15,0.6374149659863945,0.4505630595154567,0.24865617449214258,0.2642694618773215
+E04,V1 threshold graph topology only; no MSP/entropy features,1,90,64,64,15,15,0.5653061224489796,0.2659722222222222,0.25022518351778666,0.2662728885649168

topology/logs/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600/topology_steps/roberta_cola/E05_fold_metrics.csv

@@ -0,0 +1,3 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E05,V1 + V2 pattern distances; no MSP/entropy features,0,111,64,64,15,15,0.6530612244897959,0.35033030337846544,0.24436332876518546,0.25853031023829975
+E05,V1 + V2 pattern distances; no MSP/entropy features,1,111,64,64,15,15,0.682312925170068,0.4408265746621307,0.24642218310122466,0.26394215272893473

topology/logs/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600/topology_steps/roberta_cola/E06_fold_metrics.csv

@@ -0,0 +1,3 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E06,V1 + V2 + V3 MST; no MSP/entropy features,0,135,64,64,15,15,0.5904761904761905,0.2839703207089033,0.246263677414163,0.2592239305777415
+E06,V1 + V2 + V3 MST; no MSP/entropy features,1,135,64,64,15,15,0.5904761904761905,0.27656149217304504,0.2463040388096111,0.2627894269213217

topology/logs/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600/topology_steps/roberta_cola/E07_fold_metrics.csv

@@ -0,0 +1,3 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E07,V1 + V2 + V3 + V4 H0 summaries; no MSP/entropy features,0,171,64,64,15,15,0.5768707482993197,0.28068283321114024,0.23574128483998533,0.2417384014111268
+E07,V1 + V2 + V3 + V4 H0 summaries; no MSP/entropy features,1,171,64,64,15,15,0.6755102040816326,0.34892448440779633,0.24677676572026863,0.2653849859615352

topology/logs/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600/topology_steps/roberta_cola/E08_fold_metrics.csv

@@ -0,0 +1,3 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E08,V1 + V2 + V3 + V4 + V5 H1 summaries; no MSP/entropy features,0,216,64,64,15,15,0.6394557823129251,0.30078424944806836,0.2372393457189611,0.24695180922667803
+E08,V1 + V2 + V3 + V4 + V5 H1 summaries; no MSP/entropy features,1,216,64,64,15,15,0.6496598639455782,0.3317478594794721,0.2500439859661342,0.26712845108090827

topology/logs/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600/topology_steps/roberta_cola/E09_fold_metrics.csv

@@ -0,0 +1,3 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E09,V1-V6 vectorized PH; no MSP/entropy features,0,312,64,64,15,15,0.64421768707483,0.3091182121811731,0.24208359663538173,0.25568930691921665
+E09,V1-V6 vectorized PH; no MSP/entropy features,1,312,64,64,15,15,0.6292517006802721,0.3140922040553313,0.24688274526726783,0.263977204782055

topology/logs/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600/topology_steps/roberta_cola/E10_fold_metrics.csv

@@ -0,0 +1,3 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E10,V1-V7 selected diagram distances; no MSP/entropy features,0,318,64,64,15,15,0.5877551020408163,0.27281434644268715,0.24292573133386108,0.25452497770126364
+E10,V1-V7 selected diagram distances; no MSP/entropy features,1,318,64,64,15,15,0.5782312925170068,0.27602753085503784,0.24830068321932638,0.2669924889550639

topology/logs/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600/topology_steps/roberta_cola/E11_fold_metrics.csv

@@ -0,0 +1,3 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E11,V1-V8 cross-head graph overlap; no MSP/entropy features,0,327,64,64,15,15,0.627891156462585,0.34494664719326534,0.24685191780073212,0.2618611716516094
+E11,V1-V8 cross-head graph overlap; no MSP/entropy features,1,327,64,64,15,15,0.6659863945578232,0.32999700571614693,0.24953323382212905,0.2671796384955074

topology/logs/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600/topology_steps/roberta_cola/E12_fold_metrics.csv

@@ -0,0 +1,3 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E12,V1-V9 layer-evolution topology; no MSP/entropy features,0,330,64,64,15,15,0.627891156462585,0.34494664719326534,0.24685191780073212,0.2618611716516094
+E12,V1-V9 layer-evolution topology; no MSP/entropy features,1,330,64,64,15,15,0.6659863945578232,0.32999700571614693,0.24953323382212905,0.2671796384955074

topology/logs/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600/topology_steps/roberta_cola/E13_fold_metrics.csv

@@ -0,0 +1,3 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E13,V1-V10 topology feature selection/refit; no MSP/entropy features,0,3,64,64,15,15,0.564625850340136,0.26579597701149427,0.24975048838561012,0.26543046712036855
+E13,V1-V10 topology feature selection/refit; no MSP/entropy features,1,3,64,64,15,15,0.6972789115646258,0.4684751658386719,0.2500914557126784,0.26801599364842976

topology/logs/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600/topology_steps/roberta_cola/all_fold_metrics.csv

@@ -0,0 +1,29 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E00,MSP standalone baseline,0,1,64,64,15,15,0.745578231292517,0.3890203251722859,0.15908771043645714,0.06128636468201876
+E00,MSP standalone baseline,1,1,64,64,15,15,0.6530612244897959,0.3777026120120451,0.17553424505362947,0.10606700927019119
+E01,Normalized predictive entropy standalone baseline,0,1,64,64,15,15,0.745578231292517,0.3890203251722859,0.31158115211810106,0.3634903277934209
+E01,Normalized predictive entropy standalone baseline,1,1,64,64,15,15,0.6530612244897959,0.3777026120120451,0.38768008537164433,0.41743798645968133
+E02,MSP + entropy CatBoost baseline,0,2,64,64,15,15,0.7897959183673469,0.4613690476190476,0.24892810118057468,0.2653541582894214
+E02,MSP + entropy CatBoost baseline,1,2,64,64,15,15,0.6700680272108843,0.3318509817510332,0.24976087737105324,0.26593607921445717
+E03,V1 threshold graph topology only,0,90,64,64,15,15,0.6374149659863945,0.4505630595154567,0.24865617449214258,0.2642694618773215
+E03,V1 threshold graph topology only,1,90,64,64,15,15,0.5653061224489796,0.2659722222222222,0.25022518351778666,0.2662728885649168
+E04,V1 threshold graph topology only; no MSP/entropy features,0,90,64,64,15,15,0.6374149659863945,0.4505630595154567,0.24865617449214258,0.2642694618773215
+E04,V1 threshold graph topology only; no MSP/entropy features,1,90,64,64,15,15,0.5653061224489796,0.2659722222222222,0.25022518351778666,0.2662728885649168
+E05,V1 + V2 pattern distances; no MSP/entropy features,0,111,64,64,15,15,0.6530612244897959,0.35033030337846544,0.24436332876518546,0.25853031023829975
+E05,V1 + V2 pattern distances; no MSP/entropy features,1,111,64,64,15,15,0.682312925170068,0.4408265746621307,0.24642218310122466,0.26394215272893473
+E06,V1 + V2 + V3 MST; no MSP/entropy features,0,135,64,64,15,15,0.5904761904761905,0.2839703207089033,0.246263677414163,0.2592239305777415
+E06,V1 + V2 + V3 MST; no MSP/entropy features,1,135,64,64,15,15,0.5904761904761905,0.27656149217304504,0.2463040388096111,0.2627894269213217
+E07,V1 + V2 + V3 + V4 H0 summaries; no MSP/entropy features,0,171,64,64,15,15,0.5768707482993197,0.28068283321114024,0.23574128483998533,0.2417384014111268
+E07,V1 + V2 + V3 + V4 H0 summaries; no MSP/entropy features,1,171,64,64,15,15,0.6755102040816326,0.34892448440779633,0.24677676572026863,0.2653849859615352
+E08,V1 + V2 + V3 + V4 + V5 H1 summaries; no MSP/entropy features,0,216,64,64,15,15,0.6394557823129251,0.30078424944806836,0.2372393457189611,0.24695180922667803
+E08,V1 + V2 + V3 + V4 + V5 H1 summaries; no MSP/entropy features,1,216,64,64,15,15,0.6496598639455782,0.3317478594794721,0.2500439859661342,0.26712845108090827
+E09,V1-V6 vectorized PH; no MSP/entropy features,0,312,64,64,15,15,0.64421768707483,0.3091182121811731,0.24208359663538173,0.25568930691921665
+E09,V1-V6 vectorized PH; no MSP/entropy features,1,312,64,64,15,15,0.6292517006802721,0.3140922040553313,0.24688274526726783,0.263977204782055
+E10,V1-V7 selected diagram distances; no MSP/entropy features,0,318,64,64,15,15,0.5877551020408163,0.27281434644268715,0.24292573133386108,0.25452497770126364
+E10,V1-V7 selected diagram distances; no MSP/entropy features,1,318,64,64,15,15,0.5782312925170068,0.27602753085503784,0.24830068321932638,0.2669924889550639
+E11,V1-V8 cross-head graph overlap; no MSP/entropy features,0,327,64,64,15,15,0.627891156462585,0.34494664719326534,0.24685191780073212,0.2618611716516094
+E11,V1-V8 cross-head graph overlap; no MSP/entropy features,1,327,64,64,15,15,0.6659863945578232,0.32999700571614693,0.24953323382212905,0.2671796384955074
+E12,V1-V9 layer-evolution topology; no MSP/entropy features,0,330,64,64,15,15,0.627891156462585,0.34494664719326534,0.24685191780073212,0.2618611716516094
+E12,V1-V9 layer-evolution topology; no MSP/entropy features,1,330,64,64,15,15,0.6659863945578232,0.32999700571614693,0.24953323382212905,0.2671796384955074
+E13,V1-V10 topology feature selection/refit; no MSP/entropy features,0,3,64,64,15,15,0.564625850340136,0.26579597701149427,0.24975048838561012,0.26543046712036855
+E13,V1-V10 topology feature selection/refit; no MSP/entropy features,1,3,64,64,15,15,0.6972789115646258,0.4684751658386719,0.2500914557126784,0.26801599364842976

topology/logs/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600/topology_steps/roberta_cola/feature_table.parquet

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:ba780f2126fd19522fc88477ed10cc01dfe38dd6563f62e5066c69ab47529ada
+size 466883

topology/logs/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600/topology_steps/roberta_cola/resolved_config.yaml

@@ -0,0 +1,150 @@
+task:
+  target: misclassification
+  positive_label: error
+  primary_metric: roc_auc
+task_name: topology_steps
+seed: 1337
+data_split: test
+base_architecture: roberta-base
+model_path: /workspace/AdUE/data/full_models/roberta_runs_seeds/CoLa/0
+output_dir: /workspace/AdUE/logs/topology_steps/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600/topology_steps/roberta_cola
+experiments:
+- E00
+- E01
+- E02
+- E03
+- E04
+- E05
+- E06
+- E07
+- E08
+- E09
+- E10
+- E11
+- E12
+- E13
+baselines:
+  allowed_only:
+  - msp
+  - entropy
+  msp_score: one_minus_msp
+  entropy_score: normalized_entropy
+cv:
+  outer_folds: 2
+  stratify_by: error
+inference:
+  batch_size: 8
+  device: cuda
+  torch_dtype: bfloat16
+  max_batches: 16
+attention:
+  use_post_softmax_attention: true
+  remove_padding: true
+  keep_cls: true
+  keep_sep: true
+  symmetrization: max
+  distance: one_minus_weight
+  selected_layers:
+  - -1
+  head_mode: aggregate_all
+  aggregators:
+  - mean
+  - std
+  - max
+threshold_graph:
+  quantiles:
+  - 0.5
+  - 0.6
+  - 0.7
+  - 0.8
+  - 0.9
+patterns:
+  enabled:
+  - self
+  - previous
+  - next
+  - cls
+  - eos
+  - local_window
+  - uniform
+  local_radius: 2
+  distance: normalized_frobenius
+mst:
+  enabled_features:
+  - total_length_norm
+  - edge_mean
+  - edge_std
+  - edge_max
+  - cls_attachment
+  - cls_path_mean
+  - diameter
+  - leaf_ratio
+persistent_homology:
+  backend: mst_h0_and_graph_h1_proxy
+  maxdim: 1
+  max_death: 1.0
+  eps: 1.0e-12
+vectorized_ph:
+  grid_size: 16
+  features:
+  - betti_curve
+  - silhouette
+  silhouette_power: 1.0
+cross_head:
+  max_heads: 3
+  max_pairs: 3
+  dims:
+  - 0
+  - 1
+  distances:
+  - lightweight_summary_distance
+  threshold_quantiles:
+  - 0.6
+  - 0.8
+  - 0.9
+catboost:
+  loss_function: Logloss
+  eval_metric: AUC
+  iterations: 30
+  learning_rate: 0.02
+  depth: 3
+  l2_leaf_reg: 20.0
+  random_strength: 2.0
+  bagging_temperature: 1.0
+  auto_class_weights: Balanced
+  early_stopping_rounds: 5
+  verbose: false
+  allow_writing_files: false
+feature_selection:
+  enabled_for_final: true
+  method: catboost_importance
+  max_features: 100
+  errors_per_feature: 5
+metrics:
+  ece_bins: 10
+data:
+  _target_: src.data.text_module.TextDataModule
+  _recursive_: false
+  num_labels: 2
+  dataset:
+    _target_: src.dataset.sequence_classification.CoLa
+  batch_size: 8
+  num_workers: 0
+  pin_memory: false
+  collate_fn:
+    _target_: transformers.DataCollatorWithPadding
+    return_tensors: pt
+    padding: longest
+  tokenizer:
+    _target_: transformers.AutoTokenizer.from_pretrained
+    pretrained_model_name_or_path: roberta-base
+paths:
+  root_dir: /workspace/AdUE
+  data_dir: /workspace/AdUE/data/
+  log_dir: /workspace/AdUE/logs/
+  output_dir: /workspace/AdUE/logs/topology_steps/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600
+  work_dir: /workspace/AdUE
+extras:
+  ignore_warnings: false
+  enforce_tags: false
+  print_config: false

topology/logs/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600/topology_steps/roberta_cola/run_report.md

@@ -0,0 +1,50 @@
+# Topological Attention Uncertainty Run Summary
+
+- Dataset config: `src.dataset.sequence_classification.CoLa`
+- Data split used for CV: `test`
+- Model path: `/workspace/AdUE/data/full_models/roberta_runs_seeds/CoLa/0`
+- CV folds: `2`
+- Baselines: MSP and normalized predictive entropy only.
+- Baseline scores are used only by E00, E01, and E02; E03-E13 are topology-only.
+- Attention preprocessing: `max` symmetrization, distance `1 - W`.
+- Layer selection: `[-1]`
+
+## Summary Metrics
+
+| experiment | description | mean_roc_auc | std_roc_auc | mean_auprc | mean_brier | mean_ece | mean_num_features | folds |
+| --- | --- | --- | --- | --- | --- | --- | --- | --- |
+| E02 | MSP + entropy CatBoost baseline | 0.729932 | 0.084660 | 0.396610 | 0.249344 | 0.265645 | 2.000000 | 2 |
+| E00 | MSP standalone baseline | 0.699320 | 0.065419 | 0.383361 | 0.167311 | 0.083677 | 1.000000 | 2 |
+| E01 | Normalized predictive entropy standalone baseline | 0.699320 | 0.065419 | 0.383361 | 0.349631 | 0.390464 | 1.000000 | 2 |
+| E05 | V1 + V2 pattern distances; no MSP/entropy features | 0.667687 | 0.020684 | 0.395578 | 0.245393 | 0.261236 | 111.000000 | 2 |
+| E11 | V1-V8 cross-head graph overlap; no MSP/entropy features | 0.646939 | 0.026937 | 0.337472 | 0.248193 | 0.264520 | 327.000000 | 2 |
+| E12 | V1-V9 layer-evolution topology; no MSP/entropy features | 0.646939 | 0.026937 | 0.337472 | 0.248193 | 0.264520 | 330.000000 | 2 |
+| E08 | V1 + V2 + V3 + V4 + V5 H1 summaries; no MSP/entropy features | 0.644558 | 0.007215 | 0.316266 | 0.243642 | 0.257040 | 216.000000 | 2 |
+| E09 | V1-V6 vectorized PH; no MSP/entropy features | 0.636735 | 0.010583 | 0.311605 | 0.244483 | 0.259833 | 312.000000 | 2 |
+| E13 | V1-V10 topology feature selection/refit; no MSP/entropy features | 0.630952 | 0.093800 | 0.367136 | 0.249921 | 0.266723 | 3.000000 | 2 |
+| E07 | V1 + V2 + V3 + V4 H0 summaries; no MSP/entropy features | 0.626190 | 0.069749 | 0.314804 | 0.241259 | 0.253562 | 171.000000 | 2 |
+| E04 | V1 threshold graph topology only; no MSP/entropy features | 0.601361 | 0.050989 | 0.358268 | 0.249441 | 0.265271 | 90.000000 | 2 |
+| E03 | V1 threshold graph topology only | 0.601361 | 0.050989 | 0.358268 | 0.249441 | 0.265271 | 90.000000 | 2 |
+| E06 | V1 + V2 + V3 MST; no MSP/entropy features | 0.590476 | 0.000000 | 0.280266 | 0.246284 | 0.261007 | 135.000000 | 2 |
+| E10 | V1-V7 selected diagram distances; no MSP/entropy features | 0.582993 | 0.006734 | 0.274421 | 0.245613 | 0.260759 | 318.000000 | 2 |
+
+
+## Experiment Matrix
+- `E00`: MSP standalone baseline
+- `E01`: Normalized predictive entropy standalone baseline
+- `E02`: MSP + entropy CatBoost baseline
+- `E03`: V1 threshold graph topology only
+- `E04`: V1 threshold graph topology only; no MSP/entropy features
+- `E05`: V1 + V2 pattern distances; no MSP/entropy features
+- `E06`: V1 + V2 + V3 MST; no MSP/entropy features
+- `E07`: V1 + V2 + V3 + V4 H0 summaries; no MSP/entropy features
+- `E08`: V1 + V2 + V3 + V4 + V5 H1 summaries; no MSP/entropy features
+- `E09`: V1-V6 vectorized PH; no MSP/entropy features
+- `E10`: V1-V7 selected diagram distances; no MSP/entropy features
+- `E11`: V1-V8 cross-head graph overlap; no MSP/entropy features
+- `E12`: V1-V9 layer-evolution topology; no MSP/entropy features
+- `E13`: V1-V10 topology feature selection/refit; no MSP/entropy features
+
+## Notes
+- H0 persistence is computed exactly from MST lifetimes for the Vietoris-Rips 0-dimensional case.
+- H1 and diagram-distance features use a lightweight graph-filtration proxy unless a PH backend is added later.

topology/logs/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600/topology_steps/roberta_cola/selected_features.json

@@ -0,0 +1,10 @@
+{
+  "E13": [
+    "v1:q60:largest_component_ratio:std",
+    "v1:q70:isolated_node_ratio:mean",
+    "v5:h1:q50life:mean",
+    "v6:betti:10:max",
+    "v7:head_pair_0:h0_l2_summary",
+    "v8:head_pair_1:q60:edge_jaccard"
+  ]
+}

topology/logs/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600/topology_steps/roberta_cola/summary.csv

@@ -0,0 +1,15 @@
+experiment,description,mean_roc_auc,std_roc_auc,mean_auprc,mean_brier,mean_ece,mean_num_features,folds
+E02,MSP + entropy CatBoost baseline,0.7299319727891156,0.08466040373389953,0.3966100146850404,0.24934448927581396,0.2656451187519393,2.0,2
+E00,MSP standalone baseline,0.6993197278911565,0.0654194028852861,0.38336146859216547,0.1673109777450433,0.08367668697610497,1.0,2
+E01,Normalized predictive entropy standalone baseline,0.6993197278911565,0.0654194028852861,0.38336146859216547,0.34963061874487267,0.39046415712655114,1.0,2
+E05,V1 + V2 pattern distances; no MSP/entropy features,0.667687074829932,0.020684075912259594,0.3955784390202981,0.24539275593320506,0.26123623148361724,111.0,2
+E11,V1-V8 cross-head graph overlap; no MSP/entropy features,0.6469387755102041,0.026937401188059013,0.33747182645470614,0.2481925758114306,0.2645204050735584,327.0,2
+E12,V1-V9 layer-evolution topology; no MSP/entropy features,0.6469387755102041,0.026937401188059013,0.33747182645470614,0.2481925758114306,0.2645204050735584,330.0,2
+E08,V1 + V2 + V3 + V4 + V5 H1 summaries; no MSP/entropy features,0.6445578231292517,0.007215375318230045,0.3162660544637702,0.24364166584254765,0.2570401301537931,216.0,2
+E09,V1-V6 vectorized PH; no MSP/entropy features,0.6367346938775511,0.010582550466737482,0.3116052081182522,0.24448317095132477,0.2598332558506358,312.0,2
+E13,V1-V10 topology feature selection/refit; no MSP/entropy features,0.6309523809523809,0.09379987913699103,0.3671355714250831,0.24992097204914426,0.26672323038439916,3.0,2
+E07,V1 + V2 + V3 + V4 H0 summaries; no MSP/entropy features,0.6261904761904762,0.06974862807622408,0.31480365880946826,0.241259025280127,0.25356169368633097,171.0,2
+E04,V1 threshold graph topology only; no MSP/entropy features,0.601360544217687,0.05098865224882581,0.35826764086883944,0.24944067900496464,0.26527117522111915,90.0,2
+E03,V1 threshold graph topology only,0.601360544217687,0.05098865224882581,0.35826764086883944,0.24944067900496464,0.26527117522111915,90.0,2
+E06,V1 + V2 + V3 MST; no MSP/entropy features,0.5904761904761905,0.0,0.28026590644097416,0.24628385811188705,0.2610066787495316,135.0,2
+E10,V1-V7 selected diagram distances; no MSP/entropy features,0.5829931972789115,0.006734350297014714,0.2744209386488625,0.24561320727659375,0.2607587333281638,318.0,2

topology/logs/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600/topology_steps/roberta_cola/summary.md

@@ -0,0 +1,16 @@
+| experiment | description | mean_roc_auc | std_roc_auc | mean_auprc | mean_brier | mean_ece | mean_num_features | folds |
+| --- | --- | --- | --- | --- | --- | --- | --- | --- |
+| E02 | MSP + entropy CatBoost baseline | 0.729932 | 0.084660 | 0.396610 | 0.249344 | 0.265645 | 2.000000 | 2 |
+| E00 | MSP standalone baseline | 0.699320 | 0.065419 | 0.383361 | 0.167311 | 0.083677 | 1.000000 | 2 |
+| E01 | Normalized predictive entropy standalone baseline | 0.699320 | 0.065419 | 0.383361 | 0.349631 | 0.390464 | 1.000000 | 2 |
+| E05 | V1 + V2 pattern distances; no MSP/entropy features | 0.667687 | 0.020684 | 0.395578 | 0.245393 | 0.261236 | 111.000000 | 2 |
+| E11 | V1-V8 cross-head graph overlap; no MSP/entropy features | 0.646939 | 0.026937 | 0.337472 | 0.248193 | 0.264520 | 327.000000 | 2 |
+| E12 | V1-V9 layer-evolution topology; no MSP/entropy features | 0.646939 | 0.026937 | 0.337472 | 0.248193 | 0.264520 | 330.000000 | 2 |
+| E08 | V1 + V2 + V3 + V4 + V5 H1 summaries; no MSP/entropy features | 0.644558 | 0.007215 | 0.316266 | 0.243642 | 0.257040 | 216.000000 | 2 |
+| E09 | V1-V6 vectorized PH; no MSP/entropy features | 0.636735 | 0.010583 | 0.311605 | 0.244483 | 0.259833 | 312.000000 | 2 |
+| E13 | V1-V10 topology feature selection/refit; no MSP/entropy features | 0.630952 | 0.093800 | 0.367136 | 0.249921 | 0.266723 | 3.000000 | 2 |
+| E07 | V1 + V2 + V3 + V4 H0 summaries; no MSP/entropy features | 0.626190 | 0.069749 | 0.314804 | 0.241259 | 0.253562 | 171.000000 | 2 |
+| E04 | V1 threshold graph topology only; no MSP/entropy features | 0.601361 | 0.050989 | 0.358268 | 0.249441 | 0.265271 | 90.000000 | 2 |
+| E03 | V1 threshold graph topology only | 0.601361 | 0.050989 | 0.358268 | 0.249441 | 0.265271 | 90.000000 | 2 |
+| E06 | V1 + V2 + V3 MST; no MSP/entropy features | 0.590476 | 0.000000 | 0.280266 | 0.246284 | 0.261007 | 135.000000 | 2 |
+| E10 | V1-V7 selected diagram distances; no MSP/entropy features | 0.582993 | 0.006734 | 0.274421 | 0.245613 | 0.260759 | 318.000000 | 2 |

topology/logs/runs/2026-05-11_13-59-51_f9934c29511d4b809bc6c0667b646600/topology_steps/roberta_cola/targets.npz

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+version https://git-lfs.github.com/spec/v1
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+size 504

topology/logs/runs/2026-05-11_14-08-02_5343e15888f143a3b55609e86a47ccdd/.hydra/config.yaml

@@ -0,0 +1,149 @@
+task:
+  target: misclassification
+  positive_label: error
+  primary_metric: roc_auc
+task_name: topology_steps
+seed: 1337
+base_architecture: roberta-base
+model_path: ${paths.root_dir}/data/full_models/roberta_runs_seeds/CoLa/0
+output_dir: ${paths.output_dir}/topology_steps/roberta_cola
+experiments:
+- E00
+- E01
+- E02
+- E03
+- E04
+- E05
+- E06
+- E07
+- E08
+- E09
+- E10
+- E11
+- E12
+- E13
+baselines:
+  allowed_only:
+  - msp
+  - entropy
+  msp_score: one_minus_msp
+  entropy_score: normalized_entropy
+cv:
+  outer_folds: 2
+  stratify_by: error
+inference:
+  batch_size: 8
+  device: cuda
+  torch_dtype: bfloat16
+  max_batches: 16
+attention:
+  use_post_softmax_attention: true
+  remove_padding: true
+  keep_cls: true
+  keep_sep: true
+  symmetrization: max
+  distance: one_minus_weight
+  selected_layers:
+  - -1
+  head_mode: aggregate_all
+  aggregators:
+  - mean
+  - std
+  - max
+threshold_graph:
+  quantiles:
+  - 0.5
+  - 0.6
+  - 0.7
+  - 0.8
+  - 0.9
+patterns:
+  enabled:
+  - self
+  - previous
+  - next
+  - cls
+  - eos
+  - local_window
+  - uniform
+  local_radius: 2
+  distance: normalized_frobenius
+mst:
+  enabled_features:
+  - total_length_norm
+  - edge_mean
+  - edge_std
+  - edge_max
+  - cls_attachment
+  - cls_path_mean
+  - diameter
+  - leaf_ratio
+persistent_homology:
+  backend: mst_h0_and_graph_h1_proxy
+  maxdim: 1
+  max_death: 1.0
+  eps: 1.0e-12
+vectorized_ph:
+  grid_size: 16
+  features:
+  - betti_curve
+  - silhouette
+  silhouette_power: 1.0
+cross_head:
+  max_heads: 3
+  max_pairs: 3
+  dims:
+  - 0
+  - 1
+  distances:
+  - lightweight_summary_distance
+  threshold_quantiles:
+  - 0.6
+  - 0.8
+  - 0.9
+catboost:
+  loss_function: Logloss
+  eval_metric: AUC
+  iterations: 30
+  learning_rate: 0.02
+  depth: 3
+  l2_leaf_reg: 20.0
+  random_strength: 2.0
+  bagging_temperature: 1.0
+  auto_class_weights: Balanced
+  early_stopping_rounds: 5
+  verbose: false
+  allow_writing_files: false
+feature_selection:
+  enabled_for_final: true
+  method: catboost_importance
+  max_features: 100
+  errors_per_feature: 5
+metrics:
+  ece_bins: 10
+data:
+  _target_: src.data.text_module.TextDataModule
+  _recursive_: false
+  num_labels: 2
+  dataset:
+    _target_: src.dataset.sequence_classification.CoLa
+  batch_size: 8
+  num_workers: 0
+  pin_memory: false
+  collate_fn:
+    _target_: transformers.DataCollatorWithPadding
+    return_tensors: pt
+    padding: longest
+  tokenizer:
+    _target_: transformers.AutoTokenizer.from_pretrained
+    pretrained_model_name_or_path: ${base_architecture}
+paths:
+  root_dir: ${oc.env:PROJECT_ROOT}
+  data_dir: ${paths.root_dir}/data/
+  log_dir: ${paths.root_dir}/logs/
+  output_dir: ${hydra:runtime.output_dir}
+  work_dir: ${hydra:runtime.cwd}
+extras:
+  ignore_warnings: false
+  enforce_tags: false
+  print_config: false

topology/logs/runs/2026-05-11_14-08-02_5343e15888f143a3b55609e86a47ccdd/.hydra/hydra.yaml

@@ -0,0 +1,168 @@
+hydra:
+  run:
+    dir: ${paths.log_dir}/${task_name}/runs/${now:%Y-%m-%d}_${now:%H-%M-%S}_${uuid:}
+  sweep:
+    dir: ${paths.log_dir}/${task_name}/multiruns/${now:%Y-%m-%d}_${now:%H-%M-%S}_${uuid:}
+    subdir: ${hydra.job.num}
+  launcher:
+    _target_: hydra._internal.core_plugins.basic_launcher.BasicLauncher
+  sweeper:
+    _target_: hydra._internal.core_plugins.basic_sweeper.BasicSweeper
+    max_batch_size: null
+    params: null
+  help:
+    app_name: ${hydra.job.name}
+    header: '${hydra.help.app_name} is powered by Hydra.
+
+      '
+    footer: 'Powered by Hydra (https://hydra.cc)
+
+      Use --hydra-help to view Hydra specific help
+
+      '
+    template: '${hydra.help.header}
+
+      == Configuration groups ==
+
+      Compose your configuration from those groups (group=option)
+
+
+      $APP_CONFIG_GROUPS
+
+
+      == Config ==
+
+      Override anything in the config (foo.bar=value)
+
+
+      $CONFIG
+
+
+      ${hydra.help.footer}
+
+      '
+  hydra_help:
+    template: 'Hydra (${hydra.runtime.version})
+
+      See https://hydra.cc for more info.
+
+
+      == Flags ==
+
+      $FLAGS_HELP
+
+
+      == Configuration groups ==
+
+      Compose your configuration from those groups (For example, append hydra/job_logging=disabled
+      to command line)
+
+
+      $HYDRA_CONFIG_GROUPS
+
+
+      Use ''--cfg hydra'' to Show the Hydra config.
+
+      '
+    hydra_help: ???
+  hydra_logging:
+    version: 1
+    formatters:
+      simple:
+        format: '[%(asctime)s][HYDRA] %(message)s'
+    handlers:
+      console:
+        class: logging.StreamHandler
+        formatter: simple
+        stream: ext://sys.stdout
+    root:
+      level: INFO
+      handlers:
+      - console
+    loggers:
+      logging_example:
+        level: DEBUG
+    disable_existing_loggers: false
+  job_logging:
+    version: 1
+    formatters:
+      simple:
+        format: '[%(asctime)s][%(name)s][%(levelname)s] - %(message)s'
+    handlers:
+      console:
+        class: logging.StreamHandler
+        formatter: simple
+        stream: ext://sys.stdout
+      file:
+        class: logging.FileHandler
+        formatter: simple
+        filename: ${hydra.runtime.output_dir}/${task_name}.log
+    root:
+      level: INFO
+      handlers:
+      - console
+      - file
+    disable_existing_loggers: false
+  env: {}
+  mode: RUN
+  searchpath: []
+  callbacks: {}
+  output_subdir: .hydra
+  overrides:
+    hydra:
+    - hydra.mode=RUN
+    task:
+    - experiment=topology_steps/roberta_cola
+    - inference.max_batches=16
+    - cv.outer_folds=2
+    - catboost.iterations=30
+    - catboost.early_stopping_rounds=5
+    - extras.print_config=false
+  job:
+    name: run_attention_topology_steps
+    chdir: null
+    override_dirname: catboost.early_stopping_rounds=5,catboost.iterations=30,cv.outer_folds=2,experiment=topology_steps/roberta_cola,extras.print_config=false,inference.max_batches=16
+    id: ???
+    num: ???
+    config_name: topology_steps.yaml
+    env_set: {}
+    env_copy: []
+    config:
+      override_dirname:
+        kv_sep: '='
+        item_sep: ','
+        exclude_keys: []
+  runtime:
+    version: 1.3.2
+    version_base: '1.3'
+    cwd: /workspace/AdUE
+    config_sources:
+    - path: hydra.conf
+      schema: pkg
+      provider: hydra
+    - path: /workspace/AdUE/configs
+      schema: file
+      provider: main
+    - path: hydra_plugins.hydra_colorlog.conf
+      schema: pkg
+      provider: hydra-colorlog
+    - path: ''
+      schema: structured
+      provider: schema
+    output_dir: /workspace/AdUE/logs/topology_steps/runs/2026-05-11_14-08-02_5343e15888f143a3b55609e86a47ccdd
+    choices:
+      hydra: default
+      extras: default
+      paths: default
+      experiment: topology_steps/roberta_cola
+      data: cola
+      hydra/env: default
+      hydra/callbacks: null
+      hydra/job_logging: default
+      hydra/hydra_logging: default
+      hydra/hydra_help: default
+      hydra/help: default
+      hydra/sweeper: basic
+      hydra/launcher: basic
+      hydra/output: default
+  verbose: false

topology/logs/runs/2026-05-11_14-08-02_5343e15888f143a3b55609e86a47ccdd/.hydra/overrides.yaml

@@ -0,0 +1,6 @@
+- experiment=topology_steps/roberta_cola
+- inference.max_batches=16
+- cv.outer_folds=2
+- catboost.iterations=30
+- catboost.early_stopping_rounds=5
+- extras.print_config=false

topology/logs/runs/2026-05-11_14-08-02_5343e15888f143a3b55609e86a47ccdd/topology_steps.log

@@ -0,0 +1,4 @@
+[2026-05-11 14:08:05,035][src.data.text_module][INFO] - [rank: 0] Dataset has train/test/valid split
+[2026-05-11 14:08:05,122][src.data.text_module][INFO] - [rank: 0] Train samples: 6840 Valid samples: 1711 Test samples: 1043
+[2026-05-11 14:08:15,049][src.data.text_module][INFO] - [rank: 0] Dataset has train/test/valid split
+[2026-05-11 14:08:15,138][src.data.text_module][INFO] - [rank: 0] Train samples: 6840 Valid samples: 1711 Test samples: 1043

topology/logs/runs/2026-05-11_14-08-02_5343e15888f143a3b55609e86a47ccdd/topology_steps/roberta_cola/E00_fold_metrics.csv

@@ -0,0 +1,3 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E00,MSP standalone baseline,0,1,64,64,8,9,0.6242424242424242,0.20779787872086636,0.13257724608128596,0.10107500851154329
+E00,MSP standalone baseline,1,1,64,64,9,8,0.7946428571428571,0.319609746072342,0.10202837732499082,0.09432845748960972

topology/logs/runs/2026-05-11_14-08-02_5343e15888f143a3b55609e86a47ccdd/topology_steps/roberta_cola/E01_fold_metrics.csv

@@ -0,0 +1,3 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E01,Normalized predictive entropy standalone baseline,0,1,64,64,8,9,0.6242424242424242,0.20779787872086636,0.41957766764370463,0.5086005225072432
+E01,Normalized predictive entropy standalone baseline,1,1,64,64,9,8,0.7946428571428571,0.319609746072342,0.33553241475367823,0.4521933433529648

topology/logs/runs/2026-05-11_14-08-02_5343e15888f143a3b55609e86a47ccdd/topology_steps/roberta_cola/E02_fold_metrics.csv

@@ -0,0 +1,3 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E02,MSP + entropy CatBoost baseline,0,2,64,64,8,9,0.7414141414141414,0.28189238713976345,0.24859840260795557,0.3589622510960081
+E02,MSP + entropy CatBoost baseline,1,2,64,64,9,8,0.8024553571428571,0.28309523809523807,0.2486047939021649,0.374064315937785

topology/logs/runs/2026-05-11_14-08-02_5343e15888f143a3b55609e86a47ccdd/topology_steps/roberta_cola/E03_fold_metrics.csv

@@ -0,0 +1,3 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E03,V1 threshold graph topology only,0,90,64,64,8,9,0.43535353535353527,0.1310270979020979,0.24899339061317843,0.3573073075224119
+E03,V1 threshold graph topology only,1,90,64,64,9,8,0.609375,0.290588893617692,0.24805848763700775,0.37286852641442436

topology/logs/runs/2026-05-11_14-08-02_5343e15888f143a3b55609e86a47ccdd/topology_steps/roberta_cola/E04_fold_metrics.csv

@@ -0,0 +1,3 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E04,V1 threshold graph topology only; no MSP/entropy features,0,90,64,64,8,9,0.43535353535353527,0.1310270979020979,0.24899339061317843,0.3573073075224119
+E04,V1 threshold graph topology only; no MSP/entropy features,1,90,64,64,9,8,0.609375,0.290588893617692,0.24805848763700775,0.37286852641442436

topology/logs/runs/2026-05-11_14-08-02_5343e15888f143a3b55609e86a47ccdd/topology_steps/roberta_cola/E05_fold_metrics.csv

@@ -0,0 +1,3 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E05,V1 + V2 pattern distances; no MSP/entropy features,0,111,64,64,8,9,0.5757575757575757,0.16858381261982164,0.2505207075680807,0.36030534030271233
+E05,V1 + V2 pattern distances; no MSP/entropy features,1,111,64,64,9,8,0.5323660714285714,0.15642227255676605,0.24926265432690342,0.3741602101160042

topology/logs/runs/2026-05-11_14-08-02_5343e15888f143a3b55609e86a47ccdd/topology_steps/roberta_cola/E06_fold_metrics.csv

@@ -0,0 +1,3 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E06,V1 + V2 + V3 MST; no MSP/entropy features,0,135,64,64,8,9,0.5757575757575757,0.17061988936988937,0.24971287713225424,0.3593605599209857
+E06,V1 + V2 + V3 MST; no MSP/entropy features,1,135,64,64,9,8,0.5803571428571429,0.2684891833077317,0.24645300674413112,0.3710912508800095

topology/logs/runs/2026-05-11_14-08-02_5343e15888f143a3b55609e86a47ccdd/topology_steps/roberta_cola/E07_fold_metrics.csv

@@ -0,0 +1,3 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E07,V1 + V2 + V3 + V4 H0 summaries; no MSP/entropy features,0,171,64,64,8,9,0.5707070707070707,0.2159013250690347,0.24819019446756954,0.3573687029813992
+E07,V1 + V2 + V3 + V4 H0 summaries; no MSP/entropy features,1,171,64,64,9,8,0.6227678571428571,0.16299019607843135,0.2502850912793242,0.37575931944133745

topology/logs/runs/2026-05-11_14-08-02_5343e15888f143a3b55609e86a47ccdd/topology_steps/roberta_cola/E08_fold_metrics.csv

@@ -0,0 +1,3 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E08,V1 + V2 + V3 + V4 + V5 H1 summaries; no MSP/entropy features,0,216,64,64,8,9,0.6040404040404039,0.2040990863672862,0.24914335410489302,0.3586660917034676
+E08,V1 + V2 + V3 + V4 + V5 H1 summaries; no MSP/entropy features,1,216,64,64,9,8,0.5580357142857143,0.16312079124579126,0.24618432284231503,0.3700632793762195

topology/logs/runs/2026-05-11_14-08-02_5343e15888f143a3b55609e86a47ccdd/topology_steps/roberta_cola/E09_fold_metrics.csv

@@ -0,0 +1,3 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E09,V1-V6 vectorized PH; no MSP/entropy features,0,312,64,64,8,9,0.6202020202020202,0.18975554530490601,0.24781292913700476,0.35708613665511474
+E09,V1-V6 vectorized PH; no MSP/entropy features,1,312,64,64,9,8,0.6495535714285715,0.23451236263736264,0.24699681549289282,0.3718523686088522

topology/logs/runs/2026-05-11_14-08-02_5343e15888f143a3b55609e86a47ccdd/topology_steps/roberta_cola/E10_fold_metrics.csv

@@ -0,0 +1,3 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E10,V1-V7 selected diagram distances; no MSP/entropy features,0,318,64,64,8,9,0.5808080808080809,0.18207901335032622,0.24927016625015763,0.35882364506064507
+E10,V1-V7 selected diagram distances; no MSP/entropy features,1,318,64,64,9,8,0.6841517857142857,0.19235554070112895,0.24699577124429756,0.37193497286803323

topology/logs/runs/2026-05-11_14-08-02_5343e15888f143a3b55609e86a47ccdd/topology_steps/roberta_cola/E11_fold_metrics.csv

@@ -0,0 +1,3 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E11,V1-V8 cross-head graph overlap; no MSP/entropy features,0,327,64,64,8,9,0.6878787878787879,0.2785654014539796,0.246127741693604,0.3567209622599321
+E11,V1-V8 cross-head graph overlap; no MSP/entropy features,1,327,64,64,9,8,0.6674107142857143,0.23685672117446468,0.23979592805731986,0.3622887773927828

topology/logs/runs/2026-05-11_14-08-02_5343e15888f143a3b55609e86a47ccdd/topology_steps/roberta_cola/E12_fold_metrics.csv

@@ -0,0 +1,3 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E12,V1-V9 layer-evolution topology; no MSP/entropy features,0,330,64,64,8,9,0.6878787878787879,0.2785654014539796,0.246127741693604,0.3567209622599321
+E12,V1-V9 layer-evolution topology; no MSP/entropy features,1,330,64,64,9,8,0.6674107142857143,0.23685672117446468,0.23979592805731986,0.3622887773927828

topology/logs/runs/2026-05-11_14-08-02_5343e15888f143a3b55609e86a47ccdd/topology_steps/roberta_cola/E13_fold_metrics.csv

@@ -0,0 +1,3 @@
+experiment,description,fold,num_features,num_train,num_test,num_errors_train,num_errors_test,roc_auc,auprc,brier,ece
+E13,V1-V10 topology feature selection/refit; no MSP/entropy features,0,1,64,64,8,9,0.6515151515151514,0.2102140070932201,0.2494412517569102,0.35894589147067324
+E13,V1-V10 topology feature selection/refit; no MSP/entropy features,1,1,64,64,9,8,0.6372767857142856,0.18329326923076925,0.24979030945029068,0.37499213381037433

topology/logs/runs/2026-05-11_14-08-02_5343e15888f143a3b55609e86a47ccdd/topology_steps/roberta_cola/chatgpt_next_iteration_brief.md

@@ -0,0 +1,59 @@
+# ChatGPT Next-Iteration Brief
+
+Paste this file into ChatGPT to propose the next iteration of topological attention uncertainty features.
+
+## Protocol
+- Dataset: `src.dataset.sequence_classification.CoLa`
+- Model path: `/workspace/AdUE/data/full_models/roberta_runs_seeds/CoLa/0`
+- Validation split only: CV, CatBoost fitting, and feature selection.
+- Test split only: final comparison. Test features are never used for training or feature selection.
+- Baseline scores are prohibited in topological methods. Only E00/E01/E02 use MSP/entropy.
+- CV folds on validation: `2`
+- Attention symmetrization: `max`
+- Selected layers: `[-1]`
+- Head aggregation: `['mean', 'std', 'max']`
+
+## Baseline Anchors
+- E00 MSP test ROC-AUC: `0.699490`
+- E02 MSP+entropy CatBoost test ROC-AUC: `0.700680`
+
+## Best Test Method
+- Method: `E02`
+- Description: MSP + entropy CatBoost baseline
+- Test ROC-AUC: `0.700680`
+- Delta vs MSP: `0.001190`
+- Delta vs E02: `0.000000`
+- Validation CV mean ROC-AUC: `0.771935`
+- Validation-to-test gap: `0.071254`
+
+## Detailed Result Table
+
+| method_name | description | feature_families | feature_description | feature_selection_description | num_features | num_train_validation | num_errors_train_validation | num_test | num_errors_test | roc_auc | test_roc_auc_delta_vs_msp | test_roc_auc_delta_vs_e02 | auprc | brier | ece | validation_cv_mean_roc_auc | validation_cv_std_roc_auc | validation_to_test_roc_auc_gap | validation_cv_mean_auprc | validation_cv_mean_brier | validation_cv_mean_ece | folds |
+| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
+| E02 | MSP + entropy CatBoost baseline | base | MSP and normalized entropy baseline features | No explicit feature selection; all configured feature-family columns for this method are used. | 2 | 128 | 17 | 128 | 30 | 0.700680 | 0.001190 | 0.000000 | 0.358801 | 0.236144 | 0.256407 | 0.771935 | 0.043163 | 0.071254 | 0.282494 | 0.248602 | 0.366513 | 2 |
+| E00 | MSP standalone baseline | one_minus_msp | standalone uncertainty score 1 - max softmax probability | No explicit feature selection; all configured feature-family columns for this method are used. | 1 | 128 | 17 | 128 | 30 | 0.699490 | 0.000000 | -0.001190 | 0.373826 | 0.167311 | 0.083554 | 0.709443 | 0.120491 | 0.009953 | 0.263704 | 0.117303 | 0.097702 | 2 |
+| E01 | Normalized predictive entropy standalone baseline | predictive_entropy_norm | standalone normalized predictive entropy | No explicit feature selection; all configured feature-family columns for this method are used. | 1 | 128 | 17 | 128 | 30 | 0.699490 | 0.000000 | -0.001190 | 0.373826 | 0.349631 | 0.390464 | 0.709443 | 0.120491 | 0.009953 | 0.263704 | 0.377555 | 0.480397 | 2 |
+| E09 | V1-V6 vectorized PH; no MSP/entropy features | v1,v2,v3,v4,v5,v6 | threshold graph features over attention affinity W; template/pattern normalized Frobenius distances; minimum-spanning-tree distance features; H0 persistence summaries from MST lifetimes; H1 graph-filtration proxy summaries and H1/H0 ratios; low-resolution Betti curve and silhouette vectors | No explicit feature selection; all configured feature-family columns for this method are used. | 312 | 128 | 17 | 128 | 30 | 0.641497 | -0.057993 | -0.059184 | 0.319934 | 0.238518 | 0.252374 | 0.634878 | 0.020755 | -0.006619 | 0.212134 | 0.247405 | 0.364469 | 2 |
+| E10 | V1-V7 selected diagram distances; no MSP/entropy features | v1,v2,v3,v4,v5,v6,v7 | threshold graph features over attention affinity W; template/pattern normalized Frobenius distances; minimum-spanning-tree distance features; H0 persistence summaries from MST lifetimes; H1 graph-filtration proxy summaries and H1/H0 ratios; low-resolution Betti curve and silhouette vectors; selected cross-head diagram-summary distances | No explicit feature selection; all configured feature-family columns for this method are used. | 318 | 128 | 17 | 128 | 30 | 0.631973 | -0.067517 | -0.068707 | 0.319074 | 0.239846 | 0.254462 | 0.632480 | 0.073075 | 0.000507 | 0.187217 | 0.248133 | 0.365379 | 2 |
+| E11 | V1-V8 cross-head graph overlap; no MSP/entropy features | v1,v2,v3,v4,v5,v6,v7,v8 | threshold graph features over attention affinity W; template/pattern normalized Frobenius distances; minimum-spanning-tree distance features; H0 persistence summaries from MST lifetimes; H1 graph-filtration proxy summaries and H1/H0 ratios; low-resolution Betti curve and silhouette vectors; selected cross-head diagram-summary distances; selected cross-head threshold graph overlap | No explicit feature selection; all configured feature-family columns for this method are used. | 327 | 128 | 17 | 128 | 30 | 0.625170 | -0.074320 | -0.075510 | 0.350084 | 0.239959 | 0.254810 | 0.677645 | 0.014473 | 0.052475 | 0.257711 | 0.242962 | 0.359505 | 2 |
+| E12 | V1-V9 layer-evolution topology; no MSP/entropy features | v1,v2,v3,v4,v5,v6,v7,v8,v9 | threshold graph features over attention affinity W; template/pattern normalized Frobenius distances; minimum-spanning-tree distance features; H0 persistence summaries from MST lifetimes; H1 graph-filtration proxy summaries and H1/H0 ratios; low-resolution Betti curve and silhouette vectors; selected cross-head diagram-summary distances; selected cross-head threshold graph overlap; layer-evolution topology/drift features | No explicit feature selection; all configured feature-family columns for this method are used. | 330 | 128 | 17 | 128 | 30 | 0.625170 | -0.074320 | -0.075510 | 0.350084 | 0.239959 | 0.254810 | 0.677645 | 0.014473 | 0.052475 | 0.257711 | 0.242962 | 0.359505 | 2 |
+| E06 | V1 + V2 + V3 MST; no MSP/entropy features | v1,v2,v3 | threshold graph features over attention affinity W; template/pattern normalized Frobenius distances; minimum-spanning-tree distance features | No explicit feature selection; all configured feature-family columns for this method are used. | 135 | 128 | 17 | 128 | 30 | 0.611905 | -0.087585 | -0.088776 | 0.319590 | 0.239673 | 0.251771 | 0.578057 | 0.003252 | -0.033847 | 0.219555 | 0.248083 | 0.365226 | 2 |
+| E13 | V1-V10 topology feature selection/refit; no MSP/entropy features | v1,v2,v3,v4,v5,v6,v7,v8,v9 | threshold graph features over attention affinity W; template/pattern normalized Frobenius distances; minimum-spanning-tree distance features; H0 persistence summaries from MST lifetimes; H1 graph-filtration proxy summaries and H1/H0 ratios; low-resolution Betti curve and silhouette vectors; selected cross-head diagram-summary distances; selected cross-head threshold graph overlap; layer-evolution topology/drift features | CatBoost-importance top-K refit on validation only; K = min(max_features, validation_errors / errors_per_feature). | 3 | 128 | 17 | 128 | 30 | 0.603912 | -0.095578 | -0.096769 | 0.318157 | 0.249778 | 0.269215 | 0.644396 | 0.010068 | 0.040484 | 0.196754 | 0.249616 | 0.366969 | 2 |
+| E07 | V1 + V2 + V3 + V4 H0 summaries; no MSP/entropy features | v1,v2,v3,v4 | threshold graph features over attention affinity W; template/pattern normalized Frobenius distances; minimum-spanning-tree distance features; H0 persistence summaries from MST lifetimes | No explicit feature selection; all configured feature-family columns for this method are used. | 171 | 128 | 17 | 128 | 30 | 0.597279 | -0.102211 | -0.103401 | 0.289734 | 0.239002 | 0.249042 | 0.596737 | 0.036813 | -0.000541 | 0.189446 | 0.249238 | 0.366564 | 2 |
+| E08 | V1 + V2 + V3 + V4 + V5 H1 summaries; no MSP/entropy features | v1,v2,v3,v4,v5 | threshold graph features over attention affinity W; template/pattern normalized Frobenius distances; minimum-spanning-tree distance features; H0 persistence summaries from MST lifetimes; H1 graph-filtration proxy summaries and H1/H0 ratios | No explicit feature selection; all configured feature-family columns for this method are used. | 216 | 128 | 17 | 128 | 30 | 0.590476 | -0.109014 | -0.110204 | 0.317261 | 0.239168 | 0.248573 | 0.581038 | 0.032530 | -0.009438 | 0.183610 | 0.247664 | 0.364365 | 2 |
+| E05 | V1 + V2 pattern distances; no MSP/entropy features | v1,v2 | threshold graph features over attention affinity W; template/pattern normalized Frobenius distances | No explicit feature selection; all configured feature-family columns for this method are used. | 111 | 128 | 17 | 128 | 30 | 0.570068 | -0.129422 | -0.130612 | 0.297998 | 0.241840 | 0.252539 | 0.554062 | 0.030682 | -0.016006 | 0.162503 | 0.249892 | 0.367233 | 2 |
+| E04 | V1 threshold graph topology only; no MSP/entropy features | v1 | threshold graph features over attention affinity W | No explicit feature selection; all configured feature-family columns for this method are used. | 90 | 128 | 17 | 128 | 30 | 0.565306 | -0.134184 | -0.135374 | 0.279315 | 0.243259 | 0.256393 | 0.522364 | 0.123052 | -0.042942 | 0.210808 | 0.248526 | 0.365088 | 2 |
+| E03 | V1 threshold graph topology only | v1 | threshold graph features over attention affinity W | No explicit feature selection; all configured feature-family columns for this method are used. | 90 | 128 | 17 | 128 | 30 | 0.565306 | -0.134184 | -0.135374 | 0.279315 | 0.243259 | 0.256393 | 0.522364 | 0.123052 | -0.042942 | 0.210808 | 0.248526 | 0.365088 | 2 |
+
+
+## Selected Features
+- `E13_validation_cv` selected 2 features:
+  - `v6:betti:08:std`
+  - `v6:silhouette:01:mean`
+- `E13_final_test_model` selected 3 features:
+  - `v6:silhouette:06:std`
+  - `v3:mst_edge_mean:mean`
+  - `v3:leaf_ratio:mean`
+
+## Ask For Next Iteration
+Use the table above to propose new topological feature methods that improve test ROC-AUC over E00/E02 without using baseline scores inside topology methods. Pay attention to validation-to-test gaps, feature counts, and which feature families help or overfit.

topology/logs/runs/2026-05-11_14-08-02_5343e15888f143a3b55609e86a47ccdd/topology_steps/roberta_cola/detailed_results_for_next_iteration.csv

@@ -0,0 +1,15 @@
+method_name,description,feature_families,feature_description,feature_selection_description,num_features,num_train_validation,num_errors_train_validation,num_test,num_errors_test,roc_auc,test_roc_auc_delta_vs_msp,test_roc_auc_delta_vs_e02,auprc,brier,ece,validation_cv_mean_roc_auc,validation_cv_std_roc_auc,validation_to_test_roc_auc_gap,validation_cv_mean_auprc,validation_cv_mean_brier,validation_cv_mean_ece,folds
+E02,MSP + entropy CatBoost baseline,base,MSP and normalized entropy baseline features,No explicit feature selection; all configured feature-family columns for this method are used.,2,128,17,128,30,0.7006802721088435,0.0011904761904761862,0.0,0.3588014457155333,0.236143930715541,0.2564072690982307,0.7719347492784993,0.043162657573645805,0.07125447716965572,0.28249381261750073,0.24860159825506023,0.36651328351689655,2
+E00,MSP standalone baseline,one_minus_msp,standalone uncertainty score 1 - max softmax probability,No explicit feature selection; all configured feature-family columns for this method are used.,1,128,17,128,30,0.6994897959183674,0.0,-0.0011904761904761862,0.37382592189724495,0.1673109777450433,0.0835537682287395,0.7094426406926406,0.12049130162101941,0.009952844774273273,0.2637038123966042,0.11730281170313839,0.0977017330005765,2
+E01,Normalized predictive entropy standalone baseline,predictive_entropy_norm,standalone normalized predictive entropy,No explicit feature selection; all configured feature-family columns for this method are used.,1,128,17,128,30,0.6994897959183674,0.0,-0.0011904761904761862,0.37382592189724495,0.34963061874487267,0.39046415712655114,0.7094426406926406,0.12049130162101941,0.009952844774273273,0.2637038123966042,0.37755504119869143,0.480396932930104,2
+E09,V1-V6 vectorized PH; no MSP/entropy features,"v1,v2,v3,v4,v5,v6",threshold graph features over attention affinity W; template/pattern normalized Frobenius distances; minimum-spanning-tree distance features; H0 persistence summaries from MST lifetimes; H1 graph-filtration proxy summaries and H1/H0 ratios; low-resolution Betti curve and silhouette vectors,No explicit feature selection; all configured feature-family columns for this method are used.,312,128,17,128,30,0.6414965986394559,-0.0579931972789115,-0.05918367346938769,0.31993406434112603,0.23851845012248798,0.2523741299810534,0.6348777958152958,0.020754680910638798,-0.006618802824160053,0.21213395397113433,0.2474048723149488,0.3644692526319835,2
+E10,V1-V7 selected diagram distances; no MSP/entropy features,"v1,v2,v3,v4,v5,v6,v7",threshold graph features over attention affinity W; template/pattern normalized Frobenius distances; minimum-spanning-tree distance features; H0 persistence summaries from MST lifetimes; H1 graph-filtration proxy summaries and H1/H0 ratios; low-resolution Betti curve and silhouette vectors; selected cross-head diagram-summary distances,No explicit feature selection; all configured feature-family columns for this method are used.,318,128,17,128,30,0.6319727891156462,-0.0675170068027211,-0.06870748299319729,0.319074126700342,0.23984584096608794,0.2544621555837041,0.6324799332611832,0.07307503453211894,0.0005071441455369863,0.1872172770257276,0.2481329687472276,0.3653793089643391,2
+E11,V1-V8 cross-head graph overlap; no MSP/entropy features,"v1,v2,v3,v4,v5,v6,v7,v8",threshold graph features over attention affinity W; template/pattern normalized Frobenius distances; minimum-spanning-tree distance features; H0 persistence summaries from MST lifetimes; H1 graph-filtration proxy summaries and H1/H0 ratios; low-resolution Betti curve and silhouette vectors; selected cross-head diagram-summary distances; selected cross-head threshold graph overlap,No explicit feature selection; all configured feature-family columns for this method are used.,327,128,17,128,30,0.6251700680272109,-0.07431972789115648,-0.07551020408163267,0.3500843478447421,0.23995901848659124,0.25481049812588663,0.6776447510822511,0.014473113635487622,0.05247468305504022,0.25771106131422217,0.2429618348754619,0.35950486982635743,2
+E12,V1-V9 layer-evolution topology; no MSP/entropy features,"v1,v2,v3,v4,v5,v6,v7,v8,v9",threshold graph features over attention affinity W; template/pattern normalized Frobenius distances; minimum-spanning-tree distance features; H0 persistence summaries from MST lifetimes; H1 graph-filtration proxy summaries and H1/H0 ratios; low-resolution Betti curve and silhouette vectors; selected cross-head diagram-summary distances; selected cross-head threshold graph overlap; layer-evolution topology/drift features,No explicit feature selection; all configured feature-family columns for this method are used.,330,128,17,128,30,0.6251700680272109,-0.07431972789115648,-0.07551020408163267,0.3500843478447421,0.23995901848659124,0.25481049812588663,0.6776447510822511,0.014473113635487622,0.05247468305504022,0.25771106131422217,0.2429618348754619,0.35950486982635743,2
+E06,V1 + V2 + V3 MST; no MSP/entropy features,"v1,v2,v3",threshold graph features over attention affinity W; template/pattern normalized Frobenius distances; minimum-spanning-tree distance features,No explicit feature selection; all configured feature-family columns for this method are used.,135,128,17,128,30,0.611904761904762,-0.0875850340136054,-0.08877551020408159,0.3195895127807685,0.23967324114139937,0.2517714324851624,0.5780573593073592,0.0032523850866265566,-0.03384740259740271,0.21955453633881053,0.2480829419381927,0.3652259054004976,2
+E13,V1-V10 topology feature selection/refit; no MSP/entropy features,"v1,v2,v3,v4,v5,v6,v7,v8,v9",threshold graph features over attention affinity W; template/pattern normalized Frobenius distances; minimum-spanning-tree distance features; H0 persistence summaries from MST lifetimes; H1 graph-filtration proxy summaries and H1/H0 ratios; low-resolution Betti curve and silhouette vectors; selected cross-head diagram-summary distances; selected cross-head threshold graph overlap; layer-evolution topology/drift features,"CatBoost-importance top-K refit on validation only; K = min(max_features, validation_errors / errors_per_feature).",3,128,17,128,30,0.6039115646258503,-0.09557823129251708,-0.09676870748299327,0.3181567227955428,0.24977838126998897,0.2692150191261119,0.6443959686147185,0.01006804501080683,0.04048440398886821,0.19675363816199468,0.24961578060360046,0.3669690126405238,2
+E07,V1 + V2 + V3 + V4 H0 summaries; no MSP/entropy features,"v1,v2,v3,v4",threshold graph features over attention affinity W; template/pattern normalized Frobenius distances; minimum-spanning-tree distance features; H0 persistence summaries from MST lifetimes,No explicit feature selection; all configured feature-family columns for this method are used.,171,128,17,128,30,0.597278911564626,-0.10221088435374137,-0.10340136054421756,0.2897339239191364,0.23900203952539567,0.24904154445359722,0.5967374639249639,0.03681253512264922,-0.0005414476396621293,0.18944576057373302,0.24923764287344685,0.36656401121136833,2
+E08,V1 + V2 + V3 + V4 + V5 H1 summaries; no MSP/entropy features,"v1,v2,v3,v4,v5",threshold graph features over attention affinity W; template/pattern normalized Frobenius distances; minimum-spanning-tree distance features; H0 persistence summaries from MST lifetimes; H1 graph-filtration proxy summaries and H1/H0 ratios,No explicit feature selection; all configured feature-family columns for this method are used.,216,128,17,128,30,0.5904761904761905,-0.10901360544217686,-0.11020408163265305,0.31726064413632427,0.2391680993896241,0.24857255524977614,0.5810380591630591,0.03253022809192429,-0.009438131313131426,0.18360993880653873,0.24766383847360401,0.3643646855398436,2
+E05,V1 + V2 pattern distances; no MSP/entropy features,"v1,v2",threshold graph features over attention affinity W; template/pattern normalized Frobenius distances,No explicit feature selection; all configured feature-family columns for this method are used.,111,128,17,128,30,0.5700680272108843,-0.129421768707483,-0.1306122448979592,0.29799762701934535,0.24183995064937558,0.2525391085247072,0.5540618235930735,0.03068242695692437,-0.0160062036178108,0.16250304258829384,0.24989168094749206,0.36723277520935826,2
+E04,V1 threshold graph topology only; no MSP/entropy features,v1,threshold graph features over attention affinity W,No explicit feature selection; all configured feature-family columns for this method are used.,90,128,17,128,30,0.5653061224489796,-0.13418367346938775,-0.13537414965986394,0.27931468828524186,0.2432594474634649,0.2563933893322078,0.5223642676767677,0.12305175772353022,-0.04294185477221191,0.21080799575989495,0.24852593912509308,0.36508791696841814,2
+E03,V1 threshold graph topology only,v1,threshold graph features over attention affinity W,No explicit feature selection; all configured feature-family columns for this method are used.,90,128,17,128,30,0.5653061224489796,-0.13418367346938775,-0.13537414965986394,0.27931468828524186,0.2432594474634649,0.2563933893322078,0.5223642676767677,0.12305175772353022,-0.04294185477221191,0.21080799575989495,0.24852593912509308,0.36508791696841814,2