Sync configs from branch main (commit: e4848f6)

README.md

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+
+---
+pretty_name: "zea configs"
+tags:
+  - ultrasound
+  - configuration
+  - zea
+---
+
+# zea Configuration Files
+
+This repository contains configuration files for [zea](https://github.com/tue-bmd/zea), a toolbox for cognitive ultrasound imaging.
+
+## Synchronization
+
+Configuration files are automatically synchronized from the main zea repository:
+
+- **Main branch**: Latest config files from the `main` branch
+- **Release tags**: Config files compatible with specific zea releases (e.g., `v0.0.1`, `v0.0.2`)
+
+## Usage
+
+```python
+import zea
+
+# Load a specific config file
+config = zea.Config.from_hf("zeahub/configs", "config_picmus_rf.yaml", repo_type="dataset")
+
+# Load from a specific release
+config = zea.Config.from_hf("zeahub/configs", "config_camus.yaml", repo_type="dataset", revision="v0.0.2")
+```
+
+## Documentation
+
+For detailed documentation and usage examples, visit:
+- 📚 [zea.readthedocs.io](https://zea.readthedocs.io)
+- 🔬 [Examples & Tutorials](https://zea.readthedocs.io/en/latest/examples.html)
+
+## Source
+
+Source repository: [github.com/tue-bmd/zea](https://github.com/tue-bmd/zea)

config_carotid.yaml

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+# config_carotid.yaml - comments were autogenerated from PARAMETER_DESCRIPTIONS in zea/config/parameters.py
+# The data section contains the parameters for the data.
+data:
+  # The path of the folder to load data files from (relative to the user data
+  # root as set in users.yaml)
+  dataset_folder: hf://zeahub/zea-carotid-2023
+  # The path of the file to load when running the UI (either an absolute path or
+  # one relative to the dataset folder)
+  file_path: 2_cross_bifur_right_0000.hdf5
+  # true: use local data on this device, false: use data from NAS
+  local: false
+  # The form of data to load (raw_data, rf_data, iq_data, beamformed_data,
+  # envelope_data, image, image_sc)
+  dtype: raw_data
+  # The dynamic range for showing data in db [min, max]
+  dynamic_range: [-40, 0]
+  # The frame number to load when running the UI (null, int, 'all')
+  frame_no: all
+
+
+# The scan section contains the parameters pertaining to the reconstruction.
+scan:
+  # The number of transmits in a frame. Can be 'all' for all transmits, an
+  # integer for a specific number of transmits selected evenly from the
+  # transmits in the frame, or a list of integers for specific transmits to
+  # select from the frame.
+  selected_transmits: all # 149 is all or 11 for instance for reduce number of Tx
+  # The number of channels in the raw data (1 for rf data, 2 for iq data)
+  n_ch: 1
+  # The number of pixels in the beamforming grid in the x-direction
+  Nx: 400
+  # The number of pixels in the beamforming grid in the z-direction
+  Nz: 600
+
+# This section contains the necessary parameters for building the pipeline.
+pipeline:
+  # The operations to perform on the data. This is a list of dictionaries, where
+  # each dictionary contains the parameters for a single operation.
+  operations:
+    - name: demodulate
+    - name: "patched_grid"
+      params:
+        operations:
+          - name: tof_correction
+            params:
+              apply_phase_rotation: true
+          - name: pfield_weighting
+          - name: delay_and_sum
+        num_patches: 100
+    - name: envelope_detect
+    - name: normalize
+    - name: log_compress
+
+# The device to run on ('cpu', 'gpu:0', 'gpu:1', ...)
+device: auto:1
+
+# Settings pertaining to plotting when running the UI (`zea --config
+# <path-to-config.yaml>`)
+plot:
+  # Set to true to save the plots to disk, false to only display them in the UI
+  save: true
+  # The plotting library to use (opencv, matplotlib)
+  plot_lib: opencv
+  # Set to true to run the UI in headless mode
+  headless: false
+  # The name for the plot
+  tag: carotid

config_echonet.yaml

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+# config_echonet.yaml - comments were autogenerated from PARAMETER_DESCRIPTIONS in zea/config/parameters.py
+# The data section contains the parameters for the data.
+data:
+  # The path of the folder to load data files from (relative to the user data
+  # root as set in users.yaml)
+  dataset_folder: echonet_v2025/train
+  # The path of the file to load when running the UI (either an absolute path or
+  # one relative to the dataset folder)
+  file_path: 0X1A8F20B8BF0B4B45.hdf5
+  # true: use local data on this device, false: use data from NAS
+  local: false
+  # The form of data to load (raw_data, rf_data, iq_data, beamformed_data,
+  # envelope_data, image, image_sc)
+  dtype: image
+  # The dynamic range for showing data in db [min, max]
+  dynamic_range: [-60, 0]
+  # The frame number to load when running the UI (null, int, 'all')
+  frame_no: all
+  # The type of data to convert to (raw_data, aligned_data, beamformed_data,
+  # envelope_data, image, image_sc)
+  to_dtype: image_sc
+
+# The scan section contains the parameters pertaining to the reconstruction.
+scan:
+  # The range of theta values in radians for scan conversion (null, [min, max]).
+  theta_range: [-0.78, 0.78] # [-45, 45] in rads
+  # The range of rho values in meters for scan conversion (null, [min, max]).
+  rho_range: [0, 1]
+  # Value to fill the image with outside the defined region (float, default
+  # 0.0).
+  fill_value: -60
+
+# This section contains the necessary parameters for building the pipeline.
+pipeline:
+  # The operations to perform on the data. This is a list of dictionaries, where
+  # each dictionary contains the parameters for a single operation.
+  operations:
+    - name: scan_convert
+      params:
+        jit_compile: false
+
+# Settings pertaining to plotting when running the UI (`zea --config
+# <path-to-config.yaml>`)
+plot:
+  # Set to true to save the plots to disk, false to only display them in the UI
+  save: true
+  # The plotting library to use (opencv, matplotlib)
+  plot_lib: opencv

config_echonetlvh.yaml

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+# config_echonetlvh.yaml - comments were autogenerated from PARAMETER_DESCRIPTIONS in zea/config/parameters.py
+# The data section contains the parameters for the data.
+data:
+  # The path of the folder to load data files from (relative to the user data
+  # root as set in users.yaml)
+  dataset_folder: echonetlvh_v2025/train
+  # The path of the file to load when running the UI (either an absolute path or
+  # one relative to the dataset folder)
+  file_path: 0X1017398D3C3F5FF9.hdf5
+  # true: use local data on this device, false: use data from NAS
+  local: false
+  # The form of data to load (raw_data, rf_data, iq_data, beamformed_data,
+  # envelope_data, image, image_sc)
+  dtype: image
+  # The dynamic range for showing data in db [min, max]
+  dynamic_range: [-60, 0]
+  # The frame number to load when running the UI (null, int, 'all')
+  frame_no: all
+  # The type of data to convert to (raw_data, aligned_data, beamformed_data,
+  # envelope_data, image, image_sc)
+  to_dtype: image_sc
+
+# The scan section contains the parameters pertaining to the reconstruction.
+scan:
+  # The range of theta values in radians for scan conversion (null, [min, max]).
+  theta_range: [-0.78, 0.78] # [-45, 45] in rads
+  # The range of rho values in meters for scan conversion (null, [min, max]).
+  rho_range: [0, 256]
+  # Value to fill the image with outside the defined region (float, default
+  # 0.0).
+  fill_value: -60
+
+# This section contains the necessary parameters for building the pipeline.
+pipeline:
+  # The operations to perform on the data. This is a list of dictionaries, where
+  # each dictionary contains the parameters for a single operation.
+  operations:
+    - name: scan_convert
+      params:
+        jit_compile: false
+        order: 2
+
+# Settings pertaining to plotting when running the UI (`zea --config
+# <path-to-config.yaml>`)
+plot:
+  # Set to true to save the plots to disk, false to only display them in the UI
+  save: true
+  # The plotting library to use (opencv, matplotlib)
+  plot_lib: opencv