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- ---
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- license: apache-2.0
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- ---
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ # Gastric Cancer Tissue Segmentation Dataset
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+
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+ **License:** [Apache-2.0](https://opensource.org/licenses/Apache-2.0)
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+
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+ ---
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+
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+ ## Overview
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+
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+ This dataset is designed for **tissue segmentation** in gastric cancer cases. It consists of **100 Regions of Interest (ROIs)** extracted from Whole Slide Images (WSIs) of 100 gastric cancer cases.
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+
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+ ![Gastric Cancer Segmentation](https://cdn-uploads.huggingface.co/production/uploads/65f978b2119e70f4dbb7c6b1/zDW5HvtTGYS2xSUGQ5kAJ.png)
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+
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+ ### Tissue Types
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+ Six tissue types are annotated:
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+ 1. **Tumor**
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+ 2. **Lymphoid stroma**
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+ 3. **Desmoplastic stroma**
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+ 4. **Smooth muscle**
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+ 5. **Necrosis**
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+ 6. **Others**
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+
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+ ---
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+
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+ ## Data Source
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+
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+ The original WSIs are sourced from the **TCGA (The Cancer Genome Atlas)** database.
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+
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+ - **Mean size of ROIs**: 4655 × 5276 pixels
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+
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+ ---
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+
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+ ## Annotation Process
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+
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+ - The annotated ROIs achieved a **78% one-time acceptance rate**.
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+ - The remaining annotations were **accepted after one revision**.
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+ - Pathologists performed minor corrections on **8.4% of all pixels** in total.
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+
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+ ---
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+
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+ ## Data Organization
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+
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+ The dataset includes:
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+ 1. **ROIs (image patches)**:
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+ - Saved as `.png` files under the corresponding folders.
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+ 2. **Annotations**:
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+ - Each ROI's annotation is saved as a `.txt` file under the corresponding folders.
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+ - The annotation is a pixel-wise matrix with the following values:
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+ - **1**: Tumor
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+ - **2**: Lymphoid stroma
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+ - **3**: Desmoplastic stroma
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+ - **4**: Smooth muscle
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+ - **5**: Necrosis
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+ - **6**: Others
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+ - **-1**: Equal to 6 (others)
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+
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+ ---
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+
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+ ## Usage and Restrictions
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+
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+ - This dataset is **for research purposes only**.
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+ - **Commercial use is strictly prohibited**.
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+
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+ If you use this dataset in your research, you must cite the following publication:
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+
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+ ```bibtex
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+ @article{gao2022unsupervised,
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+ title={Unsupervised representation learning for tissue segmentation in histopathological images: From global to local contrast},
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+ author={Gao, Zeyu and Jia, Chang and Li, Yang and Zhang, Xianli and Hong, Bangyang and Wu, Jialun and Gong, Tieliang and Wang, Chunbao and Meng, Deyu and Zheng, Yefeng and others},
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+ journal={IEEE Transactions on Medical Imaging},
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+ volume={41},
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+ number={12},
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+ pages={3611--3623},
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+ year={2022},
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+ publisher={IEEE}
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+ }
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+ ```
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+