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# Gastric Cancer Tissue Segmentation Dataset
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**License:** [Apache-2.0](https://opensource.org/licenses/Apache-2.0)
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---
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## Overview
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This dataset is designed for **tissue segmentation** in gastric cancer cases. It consists of **100 Regions of Interest (ROIs)** extracted from Whole Slide Images (WSIs) of 100 gastric cancer cases.
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### Tissue Types
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Six tissue types are annotated:
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1. **Tumor**
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2. **Lymphoid stroma**
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3. **Desmoplastic stroma**
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4. **Smooth muscle**
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5. **Necrosis**
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6. **Others**
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---
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## Data Source
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The original WSIs are sourced from the **TCGA (The Cancer Genome Atlas)** database.
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- **Mean size of ROIs**: 4655 × 5276 pixels
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---
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## Annotation Process
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- The annotated ROIs achieved a **78% one-time acceptance rate**.
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- The remaining annotations were **accepted after one revision**.
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- Pathologists performed minor corrections on **8.4% of all pixels** in total.
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---
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## Data Organization
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The dataset includes:
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1. **ROIs (image patches)**:
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- Saved as `.png` files under the corresponding folders.
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2. **Annotations**:
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- Each ROI's annotation is saved as a `.txt` file under the corresponding folders.
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- The annotation is a pixel-wise matrix with the following values:
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- **1**: Tumor
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- **2**: Lymphoid stroma
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- **3**: Desmoplastic stroma
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- **4**: Smooth muscle
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- **5**: Necrosis
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- **6**: Others
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- **-1**: Equal to 6 (others)
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---
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## Usage and Restrictions
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- This dataset is **for research purposes only**.
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- **Commercial use is strictly prohibited**.
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If you use this dataset in your research, you must cite the following publication:
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```bibtex
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@article{gao2022unsupervised,
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title={Unsupervised representation learning for tissue segmentation in histopathological images: From global to local contrast},
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author={Gao, Zeyu and Jia, Chang and Li, Yang and Zhang, Xianli and Hong, Bangyang and Wu, Jialun and Gong, Tieliang and Wang, Chunbao and Meng, Deyu and Zheng, Yefeng and others},
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journal={IEEE Transactions on Medical Imaging},
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volume={41},
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number={12},
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pages={3611--3623},
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year={2022},
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publisher={IEEE}
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}
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```
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