proj_name stringclasses 131
values | relative_path stringlengths 30 228 | class_name stringlengths 1 68 | func_name stringlengths 1 48 | masked_class stringlengths 78 9.82k | func_body stringlengths 46 9.61k | len_input int64 29 2.01k | len_output int64 14 1.94k | total int64 55 2.05k | relevant_context stringlengths 0 38.4k |
|---|---|---|---|---|---|---|---|---|---|
gephi_gephi | gephi/modules/ImportPlugin/src/main/java/org/gephi/io/importer/plugin/file/spreadsheet/process/ImportNodesProcess.java | ImportNodesProcess | execute | class ImportNodesProcess extends AbstractImportProcess {
public static final String NODE_ID = "id";
public static final String NODE_LABEL = "label";
public ImportNodesProcess(SpreadsheetGeneralConfiguration generalConfig, SheetParser parser,
ContainerLoader container, Progre... |
setupColumnsIndexesAndFindSpecialColumns(Arrays.asList(NODE_ID, NODE_LABEL), generalConfig.getColumnsClasses());
Integer idColumnIndex = specialColumnsIndexMap.get(NODE_ID);
Integer labelColumnIndex = specialColumnsIndexMap.get(NODE_LABEL);
Progress.start(progressTicket);
for ... | 158 | 433 | 591 | <methods>public void <init>(org.gephi.io.importer.plugin.file.spreadsheet.process.SpreadsheetGeneralConfiguration, org.gephi.io.importer.api.ContainerLoader, org.gephi.utils.progress.ProgressTicket, org.gephi.io.importer.plugin.file.spreadsheet.sheet.SheetParser) ,public boolean cancel() ,public void close() throws jav... |
gephi_gephi | gephi/modules/ImportPlugin/src/main/java/org/gephi/io/importer/plugin/file/spreadsheet/process/SpreadsheetGeneralConfiguration.java | SpreadsheetGeneralConfiguration | setColumnsClasses | class SpreadsheetGeneralConfiguration {
protected final Map<String, Class> columnsClasses = new LinkedHashMap<>();
protected Mode mode = Mode.NODES_TABLE;
protected TimeRepresentation timeRepresentation = TimeRepresentation.INTERVAL;
protected DateTimeZone timeZone = DateTimeZone.UTC;
public Mode ... |
this.columnsClasses.clear();
if (columnsClasses != null) {
for (String column : columnsClasses.keySet()) {
setColumnClass(column, columnsClasses.get(column));
}
}
| 646 | 58 | 704 | <no_super_class> |
gephi_gephi | gephi/modules/ImportPlugin/src/main/java/org/gephi/io/importer/plugin/file/spreadsheet/sheets/csv/CSVSheetParser.java | CSVSheetParser | getHeaderMap | class CSVSheetParser implements SheetParser {
private final CSVParser parser;
public CSVSheetParser(CSVParser parser) {
this.parser = parser;
}
@Override
public Map<String, Integer> getHeaderMap() {<FILL_FUNCTION_BODY>}
@Override
public long getCurrentRecordNumber() {
ret... |
Map<String, Integer> map = parser.getHeaderMap();
if (map == null) {
return Collections.emptyMap();
} else {
//Ignore columns without header
map.remove(null);
return map;
}
| 556 | 65 | 621 | <no_super_class> |
gephi_gephi | gephi/modules/ImportPlugin/src/main/java/org/gephi/io/importer/plugin/file/spreadsheet/sheets/csv/CSVSheetRow.java | CSVSheetRow | get | class CSVSheetRow implements SheetRow {
private final CSVRecord record;
public CSVSheetRow(CSVRecord record) {
this.record = record;
}
@Override
public boolean isConsistent() {
return record.isConsistent();
}
@Override
public int size() {
return record.size();... |
if (index < 0 || index > record.size() - 1) {
return null;
}
return record.get(index);
| 126 | 39 | 165 | <no_super_class> |
gephi_gephi | gephi/modules/ImportPlugin/src/main/java/org/gephi/io/importer/plugin/file/spreadsheet/sheets/excel/ExcelSheetParser.java | ExcelSheetParser | calculateRowStartAndEndIndexes | class ExcelSheetParser implements SheetParser {
private final Sheet sheet;
private final boolean withFirstRecordAsHeader;
private final Map<String, Integer> headerMap = new LinkedHashMap<>();
private ExcelIterator iterator;
private int rowsFirstIndex = Integer.MAX_VALUE;
private int rowsLastIn... |
int rowsToScan;
if (withFirstRecordAsHeader) {
rowsToScan = 1;
} else {
rowsToScan = 25;
}
for (int i = sheet.getFirstRowNum(), j = 0; i < sheet.getLastRowNum() && j < rowsToScan; i++, j++) {
Row row = sheet.getRow(i);
if (row !=... | 751 | 198 | 949 | <no_super_class> |
gephi_gephi | gephi/modules/ImportPlugin/src/main/java/org/gephi/io/importer/plugin/file/spreadsheet/sheets/excel/ExcelSheetRow.java | ExcelSheetRow | get | class ExcelSheetRow implements SheetRow {
private static final DataFormatter FORMATTER = new DataFormatter();
private final Row row;
private final int firstIndex;
private final int lastIndex;
public ExcelSheetRow(Row row, int firstIndex, int lastIndex) {
this.row = row;
this.first... |
index += firstIndex;
Cell cell = row.getCell(index, Row.MissingCellPolicy.RETURN_BLANK_AS_NULL);
String value = getRowCellAsString(cell, index);
if (value != null) {
value = value.trim();
if (value.isEmpty()) {
value = null;
}
... | 237 | 102 | 339 | <no_super_class> |
gephi_gephi | gephi/modules/ImportPlugin/src/main/java/org/gephi/io/processor/plugin/AppendProcessor.java | AppendProcessor | process | class AppendProcessor extends DefaultProcessor implements Processor {
@Override
public String getDisplayName() {
return NbBundle.getMessage(AppendProcessor.class, "AppendProcessor.displayName");
}
@Override
public void process() {<FILL_FUNCTION_BODY>}
} |
try {
ProjectController pc = Lookup.getDefault().lookup(ProjectController.class);
//Workspace
if (workspace == null) {
workspace = pc.getCurrentWorkspace();
}
if (workspace != null) {
pc.openWorkspace(workspace);
... | 76 | 222 | 298 | <methods>public non-sealed void <init>() ,public java.lang.String getDisplayName() ,public void process() <variables> |
gephi_gephi | gephi/modules/ImportPlugin/src/main/java/org/gephi/io/processor/plugin/DefaultScaler.java | DefaultScaler | doScale | class DefaultScaler implements Scaler {
private float sizeMinimum;
private float sizeMaximum;
private float weightMinimum;
private float weightMaximum;
private float octreeLimit;
private void setDefaults() {
sizeMaximum = 100f;
sizeMinimum = 4f;
weightMinimum = 0.4f;
... |
setDefaults();
float sizeMin = Float.POSITIVE_INFINITY;
float sizeMax = Float.NEGATIVE_INFINITY;
float xMin = Float.POSITIVE_INFINITY;
float xMax = Float.NEGATIVE_INFINITY;
float yMin = Float.POSITIVE_INFINITY;
float yMax = Float.NEGATIVE_INFINITY;
float... | 144 | 1,213 | 1,357 | <no_super_class> |
gephi_gephi | gephi/modules/ImportPlugin/src/main/java/org/gephi/io/processor/plugin/MergeProcessor.java | MergeProcessor | process | class MergeProcessor extends DefaultProcessor implements Processor {
@Override
public String getDisplayName() {
return NbBundle.getMessage(MergeProcessor.class, "MergeProcessor.displayName");
}
@Override
public void process() {<FILL_FUNCTION_BODY>}
} |
try {
if (containers.length <= 1) {
throw new RuntimeException("This processor can only handle multiple containers");
}
ProjectController pc = Lookup.getDefault().lookup(ProjectController.class);
//Workspace
if (workspace == null) {
... | 78 | 193 | 271 | <methods>public non-sealed void <init>() ,public java.lang.String getDisplayName() ,public void process() <variables> |
gephi_gephi | gephi/modules/ImportPlugin/src/main/java/org/gephi/io/processor/plugin/MultiProcessor.java | MultiProcessor | process | class MultiProcessor extends DefaultProcessor implements Processor {
@Override
public String getDisplayName() {
return NbBundle.getMessage(MergeProcessor.class, "MultiProcessor.displayName");
}
@Override
public void process() {<FILL_FUNCTION_BODY>}
} |
try {
if (containers.length <= 1) {
throw new RuntimeException("This processor can only handle multiple containers");
}
ProjectController pc = Lookup.getDefault().lookup(ProjectController.class);
Progress.start(progressTicket, calculateWorkUnits... | 76 | 195 | 271 | <methods>public non-sealed void <init>() ,public java.lang.String getDisplayName() ,public void process() <variables> |
gephi_gephi | gephi/modules/ImportPluginUI/src/main/java/org/gephi/ui/importer/plugin/EdgeListDatabaseImporterUI.java | EdgeListDatabaseImporterUI | setup | class EdgeListDatabaseImporterUI implements ImporterUI {
private EdgeListPanel panel;
private DatabaseImporter[] importers;
@Override
public void setup(Importer[] importers) {<FILL_FUNCTION_BODY>}
@Override
public JPanel getPanel() {
if (panel == null) {
panel = new EdgeLi... |
this.importers = (DatabaseImporter[]) importers;
if (panel == null) {
panel = new EdgeListPanel();
}
//Driver Combo
SQLDriver[] driverArray = new SQLDriver[0];
driverArray = Lookup.getDefault().lookupAll(SQLDriver.class).toArray(driverArray);
panel.s... | 292 | 106 | 398 | <no_super_class> |
gephi_gephi | gephi/modules/ImportPluginUI/src/main/java/org/gephi/ui/importer/plugin/EdgeListDatabaseManager.java | EdgeListDatabaseManager | doPersist | class EdgeListDatabaseManager {
private FileObject databaseConfigurations;
private List<Database> edgeListDatabases = new ArrayList<>();
// private Map<String, EdgeListDatabase> nameToInstance = new HashMap<String, EdgeListDatabase>();
public EdgeListDatabaseManager() {
load();
}
publi... |
FileLock lock = null;
ObjectOutputStream ois = null;
try {
if (databaseConfigurations != null) {
databaseConfigurations.delete();
}
databaseConfigurations = FileUtil.getConfigRoot().createData("EdgeListDatabase");
lock = database... | 474 | 200 | 674 | <no_super_class> |
gephi_gephi | gephi/modules/ImportPluginUI/src/main/java/org/gephi/ui/importer/plugin/EdgeListPanel.java | ConfigurationComboItem | toString | class ConfigurationComboItem {
private final EdgeListDatabaseImpl db;
private String configurationName;
public ConfigurationComboItem(EdgeListDatabaseImpl db) {
this.db = db;
this.configurationName = db.getName();
}
public EdgeListDatabaseImpl getDb() {... |
String name = configurationName;
if (name == null || name.isEmpty()) {
name = SQLUtils.getUrl(db.getSQLDriver(), db.getHost(), db.getPort(), db.getDBName());
}
return name;
| 138 | 64 | 202 | <methods>public void <init>() ,public void <init>(java.awt.LayoutManager) ,public void <init>(boolean) ,public void <init>(java.awt.LayoutManager, boolean) ,public javax.accessibility.AccessibleContext getAccessibleContext() ,public javax.swing.plaf.PanelUI getUI() ,public java.lang.String getUIClassID() ,public void s... |
gephi_gephi | gephi/modules/ImportPluginUI/src/main/java/org/gephi/ui/importer/plugin/ImporterVnaUI.java | ImporterVnaUI | unsetup | class ImporterVnaUI implements ImporterUI {
private final String MESSAGE_LINEAR = NbBundle.getMessage(getClass(), "ImporterVnaUI.message.linear");
private final String MESSAGE_SQUARE_ROOT = NbBundle.getMessage(getClass(), "ImporterVnaUI.message.square_root");
private final String MESSAGE_LOGARITHMIC = NbBu... |
if (update) {
float coefficient = 1;
if (comboBox.getSelectedItem().equals(EdgeWidthFunction.Function.LINEAR)) {
try {
coefficient = Float.parseFloat(textField.getText());
} catch (NumberFormatException e) {
}
... | 857 | 164 | 1,021 | <no_super_class> |
gephi_gephi | gephi/modules/ImportPluginUI/src/main/java/org/gephi/ui/importer/plugin/spreadsheet/SpreadsheetImporterCSVUI.java | SpreadsheetImporterCSVUI | setup | class SpreadsheetImporterCSVUI implements ImporterUI, ImporterUI.WithWizard {
private ImporterSpreadsheetCSV[] importers;
private ImportCSVUIWizard wizard;
@Override
public void setup(Importer[] importers) {<FILL_FUNCTION_BODY>}
@Override
public JPanel getPanel() {
return null;
}
... |
this.importers = (ImporterSpreadsheetCSV[]) importers;
for (ImporterSpreadsheetCSV importer : this.importers) {
importer.refreshAutoDetections();
}
| 282 | 57 | 339 | <no_super_class> |
gephi_gephi | gephi/modules/ImportPluginUI/src/main/java/org/gephi/ui/importer/plugin/spreadsheet/SpreadsheetImporterExcelUI.java | SpreadsheetImporterExcelUI | setup | class SpreadsheetImporterExcelUI implements ImporterUI, ImporterUI.WithWizard {
private ImporterSpreadsheetExcel[] importers;
private ImportExcelUIWizard wizard;
@Override
public void setup(Importer[] importers) {<FILL_FUNCTION_BODY>}
@Override
public JPanel getPanel() {
return null;
... |
this.importers = (ImporterSpreadsheetExcel[]) importers;
for (ImporterSpreadsheetExcel importer : this.importers) {
importer.refreshAutoDetections();
}
| 282 | 57 | 339 | <no_super_class> |
gephi_gephi | gephi/modules/ImportPluginUI/src/main/java/org/gephi/ui/importer/plugin/spreadsheet/wizard/AbstractWizardVisualPanel1.java | AbstractWizardVisualPanel1 | refreshPreviewTable | class AbstractWizardVisualPanel1 extends javax.swing.JPanel {
protected static final int MAX_ROWS_PREVIEW = 25;
private final AbstractImporterSpreadsheet importer;
protected int columnCount = 0;
protected boolean hasSourceNodeColumn = false;
protected boolean hasTargetNodeColumn = false;
prote... |
try (SheetParser parser = importer.createParser()) {
Map<String, Integer> headerMap = parser.getHeaderMap();
final String[] headers = headerMap.keySet().toArray(new String[0]);
columnCount = headers.length;
hasSourceNodeColumn = false;
hasTargetNode... | 198 | 971 | 1,169 | <methods>public void <init>() ,public void <init>(java.awt.LayoutManager) ,public void <init>(boolean) ,public void <init>(java.awt.LayoutManager, boolean) ,public javax.accessibility.AccessibleContext getAccessibleContext() ,public javax.swing.plaf.PanelUI getUI() ,public java.lang.String getUIClassID() ,public void s... |
gephi_gephi | gephi/modules/ImportPluginUI/src/main/java/org/gephi/ui/importer/plugin/spreadsheet/wizard/ImportCSVUIWizard.java | ImportCSVUIWizard | buildPanels | class ImportCSVUIWizard {
private final ImporterSpreadsheetCSV[] importers;
private WizardDescriptor.Panel[] panels;
private WizardDescriptor wizardDescriptor;
public ImportCSVUIWizard(ImporterSpreadsheetCSV[] importers) {
this.importers = importers;
initDescriptor();
}
public... |
panels = new WizardDescriptor.Panel[importers.length * 2];
for (int i = 0; i < importers.length; i++) {
ImporterSpreadsheetCSV importer = importers[i];
WizardPanel1CSV step1 = new WizardPanel1CSV(importer);
WizardPanel2 step2 = new WizardPanel2(importer);
... | 195 | 407 | 602 | <no_super_class> |
gephi_gephi | gephi/modules/ImportPluginUI/src/main/java/org/gephi/ui/importer/plugin/spreadsheet/wizard/ImportExcelUIWizard.java | ImportExcelUIWizard | buildPanels | class ImportExcelUIWizard {
private final ImporterSpreadsheetExcel[] importers;
private WizardDescriptor.Panel[] panels;
private WizardDescriptor wizardDescriptor;
public ImportExcelUIWizard(ImporterSpreadsheetExcel[] importers) {
this.importers = importers;
initDescriptor();
}
... |
panels = new WizardDescriptor.Panel[importers.length * 2];
for (int i = 0; i < importers.length; i++) {
ImporterSpreadsheetExcel importer = importers[i];
WizardPanel1Excel step1 = new WizardPanel1Excel(importer);
WizardPanel2 step2 = new WizardPanel2(importer);
... | 195 | 408 | 603 | <no_super_class> |
gephi_gephi | gephi/modules/ImportPluginUI/src/main/java/org/gephi/ui/importer/plugin/spreadsheet/wizard/ImportModeWrapper.java | ImportModeWrapper | equals | class ImportModeWrapper {
private final SpreadsheetGeneralConfiguration.Mode mode;
public ImportModeWrapper(SpreadsheetGeneralConfiguration.Mode mode) {
this.mode = mode;
}
public SpreadsheetGeneralConfiguration.Mode getMode() {
return mode;
}
@Override
public int hashCod... |
if (this == obj) {
return true;
}
if (obj == null) {
return false;
}
if (getClass() != obj.getClass()) {
return false;
}
final ImportModeWrapper other = (ImportModeWrapper) obj;
return this.mode == other.mode;
| 191 | 86 | 277 | <no_super_class> |
gephi_gephi | gephi/modules/ImportPluginUI/src/main/java/org/gephi/ui/importer/plugin/spreadsheet/wizard/WizardPanel1CSV.java | WizardPanel1CSV | fireChangeEvent | class WizardPanel1CSV implements WizardDescriptor.Panel {
private final ImporterSpreadsheetCSV importer;
private final Set<ChangeListener> listeners = new HashSet<>(1); // or can use ChangeSupport in NB 6.0
/**
* The visual component that displays this panel. If you need to access the
* component... |
Iterator<ChangeListener> it;
synchronized (listeners) {
it = new HashSet<>(listeners).iterator();
}
ChangeEvent ev = new ChangeEvent(this);
while (it.hasNext()) {
it.next().stateChanged(ev);
}
| 620 | 75 | 695 | <no_super_class> |
gephi_gephi | gephi/modules/ImportPluginUI/src/main/java/org/gephi/ui/importer/plugin/spreadsheet/wizard/WizardPanel1Excel.java | WizardPanel1Excel | fireChangeEvent | class WizardPanel1Excel implements WizardDescriptor.Panel {
private final ImporterSpreadsheetExcel importer;
private final Set<ChangeListener> listeners = new HashSet<>(1); // or can use ChangeSupport in NB 6.0
/**
* The visual component that displays this panel. If you need to access the
* compo... |
Iterator<ChangeListener> it;
synchronized (listeners) {
it = new HashSet<>(listeners).iterator();
}
ChangeEvent ev = new ChangeEvent(this);
while (it.hasNext()) {
it.next().stateChanged(ev);
}
| 604 | 75 | 679 | <no_super_class> |
gephi_gephi | gephi/modules/ImportPluginUI/src/main/java/org/gephi/ui/importer/plugin/spreadsheet/wizard/WizardPanel2.java | WizardPanel2 | storeSettings | class WizardPanel2 implements WizardDescriptor.Panel {
/**
* The visual component that displays this panel. If you need to access the component from this class, just use getComponent().
*/
private final WizardVisualPanel2 component;
private final AbstractImporterSpreadsheet importer;
private ... |
String[] columnsToImport = component.getColumnsToImport();
Class[] columnTypes = component.getColumnsToImportTypes();
Map<String, Class> columnsClasses = new HashMap<>();
for (int i = 0; i < columnsToImport.length; i++) {
columnsClasses.put(columnsToImport[i], columnTypes[i... | 611 | 125 | 736 | <no_super_class> |
gephi_gephi | gephi/modules/ImportPluginUI/src/main/java/org/gephi/ui/importer/plugin/spreadsheet/wizard/WizardVisualPanel2.java | WizardVisualPanel2 | loadColumns | class WizardVisualPanel2 extends JPanel {
private static final String ASSIGN_NEW_NODES_IDS_SAVED_PREFERENCES = "WizardVisualPanel2_assign_new_nodes_ids";
private static final String CREATE_NEW_NODES_SAVED_PREFERENCES = "WizardVisualPanel2_create_new_nodes";
private final WizardPanel2 wizard2;
private f... |
try {
columnsCheckBoxes.clear();
columnsComboBoxes.clear();
JLabel columnsLabel = new JLabel(getMessage("WizardVisualPanel2.columnsLabel.text"));
settingsPanel.add(columnsLabel, "wrap");
final String[] headers = importer.getHeadersMap().keySet().toAr... | 1,573 | 421 | 1,994 | <methods>public void <init>() ,public void <init>(java.awt.LayoutManager) ,public void <init>(boolean) ,public void <init>(java.awt.LayoutManager, boolean) ,public javax.accessibility.AccessibleContext getAccessibleContext() ,public javax.swing.plaf.PanelUI getUI() ,public java.lang.String getUIClassID() ,public void s... |
gephi_gephi | gephi/modules/LayoutAPI/src/main/java/org/gephi/layout/LayoutControllerImpl.java | LayoutRun | run | class LayoutRun implements LongTask, Runnable {
private final Layout layout;
private final Integer iterations;
private boolean stopRun = false;
private ProgressTicket progressTicket;
public LayoutRun(Layout layout) {
this.layout = layout;
this.i... |
Progress.setDisplayName(progressTicket, layout.getBuilder().getName());
Progress.start(progressTicket);
layout.initAlgo();
long i = 0;
while (layout.canAlgo() && !stopRun) {
layout.goAlgo();
i++;
if (ite... | 300 | 200 | 500 | <no_super_class> |
gephi_gephi | gephi/modules/LayoutAPI/src/main/java/org/gephi/layout/LayoutModelPersistenceProvider.java | LayoutModelPersistenceProvider | writeXML | class LayoutModelPersistenceProvider implements WorkspaceXMLPersistenceProvider {
@Override
public void writeXML(XMLStreamWriter writer, Workspace workspace) {<FILL_FUNCTION_BODY>}
@Override
public void readXML(XMLStreamReader reader, Workspace workspace) {
LayoutModelImpl model = workspace.ge... |
LayoutModelImpl model = workspace.getLookup().lookup(LayoutModelImpl.class);
if (model != null) {
try {
model.writeXML(writer);
} catch (XMLStreamException ex) {
throw new RuntimeException(ex);
}
}
| 162 | 76 | 238 | <no_super_class> |
gephi_gephi | gephi/modules/LayoutAPI/src/main/java/org/gephi/layout/spi/LayoutProperty.java | LayoutProperty | createProperty | class LayoutProperty {
protected Property property;
protected String category;
/**
* Should be unique for a property and not localized.
*/
protected String canonicalName;
public LayoutProperty(Property property, String category, String canonicalName) {
this.property = property;
... |
PropertySupport.Reflection property = new PropertySupport.Reflection(
layout, valueType, getMethod, setMethod);
property.setName(propertyName);
property.setShortDescription(propertyDescription);
property.setPropertyEditorClass(editorClass);
return new LayoutPropert... | 1,770 | 85 | 1,855 | <no_super_class> |
gephi_gephi | gephi/modules/LayoutPlugin/src/main/java/org/gephi/layout/plugin/AbstractLayout.java | AbstractLayout | ensureSafeLayoutNodePositions | class AbstractLayout implements Layout {
private final LayoutBuilder layoutBuilder;
protected GraphModel graphModel;
private boolean converged;
public AbstractLayout(LayoutBuilder layoutBuilder) {
this.layoutBuilder = layoutBuilder;
}
/**
* See https://github.com/gephi/gephi/issu... |
Graph graph = graphModel.getGraph();
NodeIterable nodesIterable = graph.getNodes();
for (Node node : nodesIterable) {
if (node.x() != 0 || node.y() != 0) {
nodesIterable.doBreak();
return;
}
}
//All at 0.0, init some rando... | 277 | 185 | 462 | <no_super_class> |
gephi_gephi | gephi/modules/LayoutPlugin/src/main/java/org/gephi/layout/plugin/force/ForceVector.java | ForceVector | subtract | class ForceVector implements LayoutData {
protected float x;
protected float y;
public ForceVector(ForceVector vector) {
this.x = vector.x();
this.y = vector.y();
}
public ForceVector(float x, float y) {
this.x = x;
this.y = y;
}
public ForceVector() {
... |
if (f != null) {
x -= f.x();
y -= f.y();
}
| 436 | 34 | 470 | <no_super_class> |
gephi_gephi | gephi/modules/LayoutPlugin/src/main/java/org/gephi/layout/plugin/force/ProportionalDisplacement.java | ProportionalDisplacement | moveNode | class ProportionalDisplacement implements Displacement {
private float step;
public ProportionalDisplacement(float step) {
this.step = step;
}
@Override
public void setStep(float step) {
this.step = step;
}
private boolean assertValue(float value) {
boolean ret = ... |
ForceVector displacement = new ForceVector(forceData);
displacement.multiply(step);
float x = node.x() + displacement.x();
float y = node.y() + displacement.y();
if (assertValue(x)) {
node.setX(x);
}
if (assertValue(y)) {
node.setY(y);
... | 149 | 104 | 253 | <no_super_class> |
gephi_gephi | gephi/modules/LayoutPlugin/src/main/java/org/gephi/layout/plugin/force/StepDisplacement.java | StepDisplacement | moveNode | class StepDisplacement implements Displacement {
private float step;
public StepDisplacement(float step) {
this.step = step;
}
private boolean assertValue(float value) {
boolean ret = !Float.isInfinite(value) && !Float.isNaN(value);
return ret;
}
@Override
public ... |
ForceVector displacement = forceData.normalize();
displacement.multiply(step);
float x = node.x() + displacement.x();
float y = node.y() + displacement.y();
if (assertValue(x)) {
node.setX(x);
}
if (assertValue(y)) {
node.setY(y);
... | 145 | 103 | 248 | <no_super_class> |
gephi_gephi | gephi/modules/LayoutPlugin/src/main/java/org/gephi/layout/plugin/force/quadtree/BarnesHut.java | BarnesHut | calculateForce | class BarnesHut {
/* theta is the parameter for Barnes-Hut opening criteria
*/
private float theta = (float) 1.2;
private final AbstractForce force;
public BarnesHut(AbstractForce force) {
this.force = force;
}
/* Calculates the ForceVector on node against every other node repres... |
if (tree.mass() <= 0) {
return null;
}
float distance = ForceVectorUtils.distance(node, tree);
if (tree.isIsLeaf() || tree.mass() == 1) {
// this is probably the case where tree has only the node.
if (distance < 1e-8) {
return null;
... | 179 | 212 | 391 | <no_super_class> |
gephi_gephi | gephi/modules/LayoutPlugin/src/main/java/org/gephi/layout/plugin/force/yifanHu/YifanHu.java | YifanHu | buildLayout | class YifanHu implements LayoutBuilder {
private final YifanHuLayoutUI ui = new YifanHuLayoutUI();
@Override
public YifanHuLayout buildLayout() {<FILL_FUNCTION_BODY>}
@Override
public String getName() {
return NbBundle.getMessage(YifanHu.class, "YifanHu.name");
}
@Override
pu... |
YifanHuLayout layout = new YifanHuLayout(this, new StepDisplacement(1f));
return layout;
| 292 | 36 | 328 | <no_super_class> |
gephi_gephi | gephi/modules/LayoutPlugin/src/main/java/org/gephi/layout/plugin/force/yifanHu/YifanHuProportional.java | YifanHuProportional | buildLayout | class YifanHuProportional implements LayoutBuilder {
private final YifanHuProportionalLayoutUI ui = new YifanHuProportionalLayoutUI();
@Override
public YifanHuLayout buildLayout() {<FILL_FUNCTION_BODY>}
@Override
public String getName() {
return NbBundle.getMessage(YifanHuProportional.cla... |
YifanHuLayout layout = new YifanHuLayout(this, new ProportionalDisplacement(1f));
return layout;
| 316 | 38 | 354 | <no_super_class> |
gephi_gephi | gephi/modules/LayoutPlugin/src/main/java/org/gephi/layout/plugin/forceAtlas2/ForceFactory.java | linRepulsion | apply | class linRepulsion extends RepulsionForce {
private final double coefficient;
public linRepulsion(double c) {
coefficient = c;
}
@Override
public void apply(Node n1, Node n2) {
ForceAtlas2LayoutData n1Layout = n1.getLayoutData();
ForceAtlas2... |
ForceAtlas2LayoutData nLayout = n.getLayoutData();
// Get the distance
double xDist = n.x() - r.getMassCenterX();
double yDist = n.y() - r.getMassCenterY();
double distance = (float) Math.sqrt(xDist * xDist + yDist * yDist);
if (distance > 0) {
... | 457 | 158 | 615 | <no_super_class> |
gephi_gephi | gephi/modules/LayoutPlugin/src/main/java/org/gephi/layout/plugin/forceAtlas2/NodesThread.java | NodesThread | run | class NodesThread implements Runnable {
private final Node[] nodes;
private final int from;
private final int to;
private final Region rootRegion;
private final boolean barnesHutOptimize;
private final RepulsionForce Repulsion;
private final double barnesHutTheta;
private final double g... |
// Repulsion
if (barnesHutOptimize) {
for (int nIndex = from; nIndex < to; nIndex++) {
Node n = nodes[nIndex];
rootRegion.applyForce(n, Repulsion, barnesHutTheta);
}
} else {
for (int n1Index = from; n1Index < to; n1Index++) {
... | 305 | 228 | 533 | <no_super_class> |
gephi_gephi | gephi/modules/LayoutPlugin/src/main/java/org/gephi/layout/plugin/forceAtlas2/Region.java | Region | applyForce | class Region {
private final List<Node> nodes;
private final List<Region> subregions = new ArrayList<>();
private double mass;
private double massCenterX;
private double massCenterY;
private double size;
public Region(Node[] nodes) {
this.nodes = new ArrayList<>();
this.nod... |
if (nodes.size() < 2) {
Node regionNode = nodes.get(0);
Force.apply(n, regionNode);
} else {
double distance = Math.sqrt(
(n.x() - massCenterX) * (n.x() - massCenterX) + (n.y() - massCenterY) * (n.y() - massCenterY));
if (distance * theta ... | 1,396 | 161 | 1,557 | <no_super_class> |
gephi_gephi | gephi/modules/LayoutPlugin/src/main/java/org/gephi/layout/plugin/noverlap/NoverlapLayout.java | Cell | hashCode | class Cell {
private final int row;
private final int col;
public Cell(int row, int col) {
this.row = row;
this.col = col;
}
@Override
public boolean equals(Object obj) {
if (obj == null) {
return false;
}... |
int hash = 7;
hash = 11 * hash + this.row;
hash = 11 * hash + this.col;
return hash;
| 181 | 41 | 222 | <methods>public void <init>(org.gephi.layout.spi.LayoutBuilder) ,public boolean canAlgo() ,public static void ensureSafeLayoutNodePositions(GraphModel) ,public org.gephi.layout.spi.LayoutBuilder getBuilder() ,public boolean isConverged() ,public void setConverged(boolean) ,public void setGraphModel(GraphModel) <variabl... |
gephi_gephi | gephi/modules/LayoutPlugin/src/main/java/org/gephi/layout/plugin/openord/Combine.java | Combine | run | class Combine implements Runnable {
private final OpenOrdLayout layout;
private final Object lock = new Object();
private final Control control;
public Combine(OpenOrdLayout layout) {
this.layout = layout;
this.control = layout.getControl();
}
@Override
public void run() {... |
//System.out.println("Combine results");
Worker[] workers = layout.getWorkers();
//Gather positions
Node[] positions = null;
for (Worker w : workers) {
if (positions == null) {
positions = w.getPositions();
} else {
Node[... | 308 | 771 | 1,079 | <no_super_class> |
gephi_gephi | gephi/modules/LayoutPlugin/src/main/java/org/gephi/layout/plugin/openord/Node.java | Node | clone | class Node implements Cloneable {
final int id;
boolean fixed;
float x;
float y;
float subX;
float subY;
float energy;
public Node(int id) {
this.id = id;
fixed = false;
x = y = 0;
}
@Override
protected Node clone() {<FILL_FUNCTION_BODY>}
} |
Node clone = new Node(id);
clone.fixed = fixed;
clone.energy = energy;
clone.x = x;
clone.y = y;
clone.subX = subX;
clone.subY = subY;
clone.energy = energy;
return clone;
| 108 | 78 | 186 | <no_super_class> |
gephi_gephi | gephi/modules/LayoutPlugin/src/main/java/org/gephi/layout/plugin/random/RandomLayout.java | RandomLayout | getProperties | class RandomLayout extends AbstractLayout implements Layout {
private final Random random;
private Graph graph;
private boolean converged;
private double size;
public RandomLayout(LayoutBuilder layoutBuilder, double size) {
super(layoutBuilder);
this.size = size;
random = n... |
List<LayoutProperty> properties = new ArrayList<>();
try {
properties.add(LayoutProperty.createProperty(
this, Double.class,
NbBundle.getMessage(getClass(), "Random.spaceSize.name"),
null,
"Random.spaceSize.name",
... | 374 | 140 | 514 | <methods>public void <init>(org.gephi.layout.spi.LayoutBuilder) ,public boolean canAlgo() ,public static void ensureSafeLayoutNodePositions(GraphModel) ,public org.gephi.layout.spi.LayoutBuilder getBuilder() ,public boolean isConverged() ,public void setConverged(boolean) ,public void setGraphModel(GraphModel) <variabl... |
gephi_gephi | gephi/modules/LayoutPlugin/src/main/java/org/gephi/layout/plugin/rotate/RotateLayout.java | RotateLayout | goAlgo | class RotateLayout extends AbstractLayout implements Layout {
private double angle;
private Graph graph;
public RotateLayout(LayoutBuilder layoutBuilder, double angle) {
super(layoutBuilder);
this.angle = angle;
}
@Override
public void initAlgo() {
setConverged(false);... |
graph = graphModel.getGraphVisible();
graph.readLock();
try {
double sin = Math.sin(-getAngle() * Math.PI / 180);
double cos = Math.cos(-getAngle() * Math.PI / 180);
double px = 0f;
double py = 0f;
for (Node n : graph.getNodes()) {
... | 377 | 210 | 587 | <methods>public void <init>(org.gephi.layout.spi.LayoutBuilder) ,public boolean canAlgo() ,public static void ensureSafeLayoutNodePositions(GraphModel) ,public org.gephi.layout.spi.LayoutBuilder getBuilder() ,public boolean isConverged() ,public void setConverged(boolean) ,public void setGraphModel(GraphModel) <variabl... |
gephi_gephi | gephi/modules/LayoutPlugin/src/main/java/org/gephi/layout/plugin/scale/AbstractScaleLayout.java | AbstractScaleLayout | getProperties | class AbstractScaleLayout extends AbstractLayout implements Layout {
private double scale;
private Graph graph;
public AbstractScaleLayout(LayoutBuilder layoutBuilder, double scale) {
super(layoutBuilder);
this.scale = scale;
}
@Override
public void initAlgo() {
setCon... |
List<LayoutProperty> properties = new ArrayList<>();
try {
properties.add(LayoutProperty.createProperty(
this, Double.class,
NbBundle.getMessage(getClass(), "ScaleLayout.scaleFactor.name"),
null,
"ScaleLayout.scaleFactor.name",... | 462 | 146 | 608 | <methods>public void <init>(org.gephi.layout.spi.LayoutBuilder) ,public boolean canAlgo() ,public static void ensureSafeLayoutNodePositions(GraphModel) ,public org.gephi.layout.spi.LayoutBuilder getBuilder() ,public boolean isConverged() ,public void setConverged(boolean) ,public void setGraphModel(GraphModel) <variabl... |
gephi_gephi | gephi/modules/LongTaskAPI/src/main/java/org/gephi/utils/longtask/api/LongTaskExecutor.java | RunningLongTask | call | class RunningLongTask<V> implements Callable<V> {
private final LongTask task;
private final Runnable runnable;
private final Callable<V> callable;
private final LongTaskErrorHandler errorHandler;
private Future<V> future;
private ProgressTicket progress;
public... |
if (task != null && progress != null) {
progress.start();
}
currentTask = this;
V result = null;
try {
if (runnable != null) {
runnable.run();
} else if (callable != null) {
... | 414 | 349 | 763 | <no_super_class> |
gephi_gephi | gephi/modules/LongTaskAPI/src/main/java/org/gephi/utils/progress/Progress.java | Progress | getDisplayName | class Progress {
/**
* Finish the progress task.
*
* @param progressTicket the progress ticket of the task
*/
public static void finish(ProgressTicket progressTicket) {
if (progressTicket != null) {
progressTicket.finish();
}
}
/**
* Finish the prog... |
if (progressTicket != null) {
return progressTicket.getDisplayName();
}
return "";
| 1,183 | 33 | 1,216 | <no_super_class> |
gephi_gephi | gephi/modules/MostRecentFilesAPI/src/main/java/org/gephi/desktop/mrufiles/impl/MostRecentFilesImpl.java | MostRecentFilesImpl | firePropertyChange | class MostRecentFilesImpl implements MostRecentFiles {
//http://blogs.kiyut.com/tonny/2007/08/09/netbeans-platform-and-most-recently-used-file-mru/
public static final String MRU_FILE_LIST_PROPERTY = "MRUFileList";
protected static String DEFAULT_NODE_NAME = "prefs";
protected String nodeName = null;
... |
// Guaranteed to return a non-null array
Object[] listeners = listenerList.getListenerList();
// Process the listeners last to first, notifying
// those that are interested in this event
PropertyChangeEvent event = new PropertyChangeEvent(this, propertyName, oldValue, newValue);... | 936 | 140 | 1,076 | <no_super_class> |
gephi_gephi | gephi/modules/PerspectiveAPI/src/main/java/org/gephi/perspective/PerspectiveControllerImpl.java | PerspectiveControllerImpl | beforeSave | class PerspectiveControllerImpl implements PerspectiveController {
private static final String SELECTED_PERSPECTIVE_PREFERENCE = "PerspectiveControllerImpl_selectedPerspective";
private final Perspective[] perspectives;
//Data
private String selectedPerspective;
public PerspectiveControllerImpl() ... |
Frame mainWindow = WindowManager.getDefault().getMainWindow();
if (mainWindow != null) {
lastDimension = mainWindow.getSize();
lastLocation = mainWindow.getLocation();
lastState = mainWindow.getExtendedState();
... | 848 | 69 | 917 | <no_super_class> |
gephi_gephi | gephi/modules/PreviewAPI/src/main/java/org/gephi/preview/G2DRenderTargetBuilder.java | G2DTargetImpl | resize | class G2DTargetImpl extends AbstractRenderTarget implements G2DTarget {
private final PreviewModel previewModel;
private G2DGraphics graphics;
public G2DTargetImpl(PreviewModel model, int width, int height) {
graphics = new G2DGraphics(width, height);
previewModel = mod... |
width = Math.max(1, width);
height = Math.max(1, height);
graphics.getGraphics().dispose();
graphics = new G2DGraphics(width, height);
| 402 | 51 | 453 | <no_super_class> |
gephi_gephi | gephi/modules/PreviewAPI/src/main/java/org/gephi/preview/PDFRenderTargetBuilder.java | PDFRenderTargetBuilder | buildRenderTarget | class PDFRenderTargetBuilder implements RenderTargetBuilder {
@Override
public String getName() {
return RenderTarget.PDF_TARGET;
}
@Override
public RenderTarget buildRenderTarget(PreviewModel previewModel) {<FILL_FUNCTION_BODY>}
public static class PDFRenderTargetImpl extends Abstrac... |
CanvasSize cs = previewModel.getGraphicsCanvasSize();
PreviewProperties properties = previewModel.getProperties();
float marginBottom = properties.getFloatValue(PDFTarget.MARGIN_BOTTOM);
float marginLeft = properties.getFloatValue(PDFTarget.MARGIN_LEFT);
float marginRight = prop... | 1,125 | 328 | 1,453 | <no_super_class> |
gephi_gephi | gephi/modules/PreviewAPI/src/main/java/org/gephi/preview/PreviewPersistenceProvider.java | PreviewPersistenceProvider | readXML | class PreviewPersistenceProvider implements WorkspaceXMLPersistenceProvider {
@Override
public void writeXML(XMLStreamWriter writer, Workspace workspace) {
PreviewModelImpl model = workspace.getLookup().lookup(PreviewModelImpl.class);
if (model != null) {
try {
model... |
PreviewModelImpl model =
(PreviewModelImpl) Lookup.getDefault().lookup(PreviewController.class).getModel(workspace);
try {
model.readXML(reader);
} catch (XMLStreamException ex) {
throw new RuntimeException(ex);
}
| 176 | 76 | 252 | <no_super_class> |
gephi_gephi | gephi/modules/PreviewAPI/src/main/java/org/gephi/preview/SVGRenderTargetBuilder.java | SVGRenderTargetImpl | getTopElement | class SVGRenderTargetImpl
extends AbstractRenderTarget implements SVGTarget {
private final Document document;
private final Map<String, Element> topElements = new HashMap<>();
private float scaleRatio = 1f;
public SVGRenderTargetImpl(CanvasSize cs, boolean scaleStrokes) {
... |
Element topElement = topElements.get(name);
if (topElement == null) {
topElement = createElement("g");
topElement.setAttribute("id", name);
topElements.put(name, topElement);
document.getDocumentElement().appendChild(topElement);
... | 939 | 83 | 1,022 | <no_super_class> |
gephi_gephi | gephi/modules/PreviewAPI/src/main/java/org/gephi/preview/api/CanvasSize.java | CanvasSize | toString | class CanvasSize {
private final float x;
private final float y;
private final float width;
private final float height;
/**
* Constructor.
*
* @param x The x coordinate of the top left position
* @param y The y coordinate of the top left position
* @param width ... |
return "CanvasSize{" +
"x=" + x +
", y=" + y +
", width=" + width +
", height=" + height +
'}';
| 553 | 53 | 606 | <no_super_class> |
gephi_gephi | gephi/modules/PreviewAPI/src/main/java/org/gephi/preview/api/ManagedRenderer.java | ManagedRenderer | equals | class ManagedRenderer {
private final Renderer renderer;
private boolean enabled;
public ManagedRenderer(Renderer renderer, boolean enabled) {
this.renderer = renderer;
this.enabled = enabled;
}
public boolean isEnabled() {
return enabled;
}
public void setEnabled... |
if (this == o) {
return true;
}
if (o == null || getClass() != o.getClass()) {
return false;
}
ManagedRenderer that = (ManagedRenderer) o;
return enabled == that.enabled && renderer.equals(that.renderer);
| 178 | 80 | 258 | <no_super_class> |
gephi_gephi | gephi/modules/PreviewAPI/src/main/java/org/gephi/preview/api/PreviewPreset.java | PreviewPreset | equals | class PreviewPreset implements Comparable<PreviewPreset> {
protected final Map<String, Object> properties;
protected final String name;
public PreviewPreset(String name) {
properties = new HashMap<>();
this.name = name;
}
public PreviewPreset(String name, Map<String, Object> prope... |
if (obj == this) {
return true;
}
if (obj != null && obj instanceof PreviewPreset) {
PreviewPreset p = (PreviewPreset) obj;
return p.name.equals(name) && p.properties.equals(properties);
}
return false;
| 359 | 81 | 440 | <no_super_class> |
gephi_gephi | gephi/modules/PreviewAPI/src/main/java/org/gephi/preview/api/Vector.java | Vector | mag | class Vector {
public float x;
public float y;
public Vector() {
}
public Vector(float x, float y) {
this.x = x;
this.y = y;
}
public static Vector div(Vector v, float n) {
return new Vector(v.x / n, v.y / n);
}
public static Vector mult(Vector v, float n... |
return (float) Math.sqrt(x * x + y * y);
| 818 | 21 | 839 | <no_super_class> |
gephi_gephi | gephi/modules/PreviewAPI/src/main/java/org/gephi/preview/types/DependantColor.java | DependantColor | getColor | class DependantColor {
private final Color customColor;
private final Mode mode;
public DependantColor() {
customColor = null;
this.mode = Mode.PARENT;
}
public DependantColor(Mode mode) {
customColor = mode.equals(Mode.CUSTOM) ? Color.BLACK : null;
this.mode = mod... |
if (mode.equals(Mode.CUSTOM) && customColor != null) {
return customColor;
} else if (mode.equals(Mode.DARKER)){
return parentColor.darker();
}
return parentColor;
| 223 | 66 | 289 | <no_super_class> |
gephi_gephi | gephi/modules/PreviewAPI/src/main/java/org/gephi/preview/types/DependantOriginalColor.java | DependantOriginalColor | getColor | class DependantOriginalColor {
private final Color customColor;
private final Mode mode;
public DependantOriginalColor(Mode mode) {
customColor = mode.equals(DependantOriginalColor.Mode.CUSTOM) ? Color.BLACK : null;
this.mode = mode;
}
public DependantOriginalColor(Color customCol... |
if (!mode.equals(Mode.CUSTOM)) {
if (mode.equals(Mode.ORIGINAL) && originalColor != null) {
return originalColor;
}
return parentColor;
}
return customColor;
| 205 | 65 | 270 | <no_super_class> |
gephi_gephi | gephi/modules/PreviewAPI/src/main/java/org/gephi/preview/types/EdgeColor.java | EdgeColor | getColor | class EdgeColor {
private final Mode mode;
private final Color customColor;
public EdgeColor(Mode mode) {
customColor = mode.equals(Mode.CUSTOM) ? Color.BLACK : null;
this.mode = mode;
}
public EdgeColor(Color customColor) {
this.customColor = customColor;
this.mod... |
switch (mode) {
case ORIGINAL:
return edgeColor != null ? edgeColor : Color.BLACK;
case SOURCE:
return sourceColor;
case TARGET:
return targetColor;
case MIXED:
return new Color((int) ((sourceColor.g... | 207 | 190 | 397 | <no_super_class> |
gephi_gephi | gephi/modules/PreviewAPI/src/main/java/org/gephi/preview/types/editors/AbstractColorPropertyEditor.java | AbstractColorPropertyEditor | toText | class AbstractColorPropertyEditor extends PropertyEditorSupport {
protected String toText(String mode, Color color) {<FILL_FUNCTION_BODY>}
protected Color toColor(String text) {
Pattern p = Pattern.compile("\\w+\\s*\\[\\s*(\\d+)\\s*,\\s*(\\d+)\\s*,\\s*(\\d+)\\s*,?(\\d+)?\\s*\\]");
Matcher m = ... |
if (color.getAlpha() < 255) {
return String.format(
"%s [%d,%d,%d,%d]",
mode.toLowerCase(),
color.getRed(),
color.getGreen(),
color.getBlue(),
color.getAlpha());
} else {
return Strin... | 340 | 140 | 480 | <methods>public void <init>() ,public void <init>(java.lang.Object) ,public synchronized void addPropertyChangeListener(java.beans.PropertyChangeListener) ,public void firePropertyChange() ,public java.lang.String getAsText() ,public java.awt.Component getCustomEditor() ,public java.lang.String getJavaInitializationStr... |
gephi_gephi | gephi/modules/PreviewAPI/src/main/java/org/gephi/preview/types/editors/BasicDependantColorPropertyEditor.java | BasicDependantColorPropertyEditor | getAsText | class BasicDependantColorPropertyEditor extends AbstractColorPropertyEditor {
@Override
public String getAsText() {<FILL_FUNCTION_BODY>}
@Override
public void setAsText(String s) {
if (matchColorMode(s, DependantColor.Mode.CUSTOM.name().toLowerCase())) {
setValue(new DependantColo... |
DependantColor c = (DependantColor) getValue();
if (c.getMode().equals(DependantColor.Mode.CUSTOM)) {
return toText(c.getMode().name(), c.getCustomColor() == null ? Color.BLACK : c.getCustomColor());
} else {
return c.getMode().name().toLowerCase();
}
| 229 | 95 | 324 | <methods>public non-sealed void <init>() <variables> |
gephi_gephi | gephi/modules/PreviewAPI/src/main/java/org/gephi/preview/types/editors/BasicDependantOriginalColorPropertyEditor.java | BasicDependantOriginalColorPropertyEditor | setAsText | class BasicDependantOriginalColorPropertyEditor extends AbstractColorPropertyEditor {
@Override
public String getAsText() {
DependantOriginalColor c = (DependantOriginalColor) getValue();
if (c.getMode().equals(DependantOriginalColor.Mode.CUSTOM)) {
return toText(c.getMode().name(),... |
if (matchColorMode(s, DependantOriginalColor.Mode.CUSTOM.name().toLowerCase())) {
setValue(new DependantOriginalColor(toColor(s)));
} else if (matchColorMode(s, DependantOriginalColor.Mode.ORIGINAL.name().toLowerCase())) {
setValue(new DependantOriginalColor(DependantOriginalCo... | 181 | 155 | 336 | <methods>public non-sealed void <init>() <variables> |
gephi_gephi | gephi/modules/PreviewAPI/src/main/java/org/gephi/preview/types/editors/BasicEdgeColorPropertyEditor.java | BasicEdgeColorPropertyEditor | setAsText | class BasicEdgeColorPropertyEditor extends AbstractColorPropertyEditor {
@Override
public String getAsText() {
EdgeColor c = (EdgeColor) getValue();
if (c.getMode().equals(EdgeColor.Mode.CUSTOM)) {
return toText(c.getMode().name(), c.getCustomColor() == null ? Color.BLACK : c.getCus... |
if (matchColorMode(s, EdgeColor.Mode.CUSTOM.name().toLowerCase())) {
setValue(new EdgeColor(toColor(s)));
} else if (matchColorMode(s, EdgeColor.Mode.MIXED.name().toLowerCase())) {
setValue(new EdgeColor(EdgeColor.Mode.MIXED));
} else if (matchColorMode(s, EdgeColor.Mod... | 172 | 230 | 402 | <methods>public non-sealed void <init>() <variables> |
gephi_gephi | gephi/modules/PreviewExport/src/main/java/org/gephi/io/exporter/preview/PDFExporter.java | PDFExporter | execute | class PDFExporter implements ByteExporter, VectorExporter, LongTask {
private ProgressTicket progress;
private Workspace workspace;
private OutputStream stream;
private boolean cancel = false;
private PDFTarget target;
//Parameters
private float marginTop = 18f;
private float marginBott... |
Progress.start(progress);
PreviewController controller = Lookup.getDefault().lookup(PreviewController.class);
controller.getModel(workspace).getProperties().putValue(PreviewProperty.VISIBILITY_RATIO, 1.0);
controller.refreshPreview(workspace);
PreviewProperties props = controll... | 670 | 561 | 1,231 | <no_super_class> |
gephi_gephi | gephi/modules/PreviewExport/src/main/java/org/gephi/io/exporter/preview/PNGExporter.java | PNGExporter | setExportProperties | class PNGExporter implements VectorExporter, ByteExporter, LongTask {
private ProgressTicket progress;
private boolean cancel = false;
private Workspace workspace;
private OutputStream stream;
private int width = 1024;
private int height = 1024;
private boolean transparentBackground = false... |
PreviewProperties props = m.getProperties();
props.putValue(PreviewProperty.VISIBILITY_RATIO, 1.0F);
props.putValue("width", width);
props.putValue("height", height);
oldColor = props.getColorValue(PreviewProperty.BACKGROUND_COLOR);
if (transparentBackground) {
... | 870 | 144 | 1,014 | <no_super_class> |
gephi_gephi | gephi/modules/PreviewExport/src/main/java/org/gephi/io/exporter/preview/SVGExporter.java | SVGExporter | execute | class SVGExporter implements CharacterExporter, VectorExporter, LongTask {
//Architecture
private Document doc;
private ProgressTicket progress;
private boolean cancel = false;
private Workspace workspace;
private Writer writer;
private SVGTarget target;
//Settings
private boolean s... |
PreviewController controller = Lookup.getDefault().lookup(PreviewController.class);
controller.getModel(workspace).getProperties().putValue(PreviewProperty.VISIBILITY_RATIO, 1.0);
controller.refreshPreview(workspace);
PreviewProperties props = controller.getModel(workspace).getProperti... | 385 | 418 | 803 | <no_super_class> |
gephi_gephi | gephi/modules/PreviewExportUI/src/main/java/org/gephi/ui/exporter/preview/UIExporterPDF.java | ExporterPDFSettings | load | class ExporterPDFSettings extends AbstractExporterSettings {
// Preference names
private final static String MARGIN_TOP = "PDF_marginTop";
private final static String MARGIN_BOTTOM = "PDF_marginBottom";
private final static String MARGIN_LEFT = "PDF_marginLeft";
private final st... |
exporter.setMarginTop(get(MARGIN_TOP, DEFAULT.getMarginTop()));
exporter.setMarginBottom(get(MARGIN_BOTTOM, DEFAULT.getMarginBottom()));
exporter.setMarginLeft(get(MARGIN_LEFT, DEFAULT.getMarginLeft()));
exporter.setMarginRight(get(MARGIN_RIGHT, DEFAULT.getMarginRight())... | 398 | 224 | 622 | <no_super_class> |
gephi_gephi | gephi/modules/PreviewExportUI/src/main/java/org/gephi/ui/exporter/preview/UIExporterPNG.java | UIExporterPNG | setup | class UIExporterPNG implements ExporterUI {
private final ExporterPNGSettings settings = new ExporterPNGSettings();
private UIExporterPNGPanel panel;
private PNGExporter exporter;
private ValidationPanel validationPanel;
@Override
public JPanel getPanel() {
panel = new UIExporterPNGPan... |
this.exporter = (PNGExporter) exporter;
settings.load(this.exporter);
if (panel != null) {
panel.setup(this.exporter);
}
| 584 | 54 | 638 | <no_super_class> |
gephi_gephi | gephi/modules/PreviewExportUI/src/main/java/org/gephi/ui/exporter/preview/UIExporterSVG.java | UIExporterSVG | setup | class UIExporterSVG implements ExporterUI {
private final ExporterSVGSettings settings = new ExporterSVGSettings();
private UIExporterSVGPanel panel;
private SVGExporter exporterSVG;
@Override
public void setup(Exporter exporter) {<FILL_FUNCTION_BODY>}
@Override
public void unsetup(boolea... |
exporterSVG = (SVGExporter) exporter;
settings.load(exporterSVG);
if (panel != null) {
panel.setup(exporterSVG);
}
| 469 | 54 | 523 | <no_super_class> |
gephi_gephi | gephi/modules/PreviewExportUI/src/main/java/org/gephi/ui/exporter/preview/UIExporterSVGPanel.java | UIExporterSVGPanel | initComponents | class UIExporterSVGPanel extends javax.swing.JPanel {
// Variables declaration - do not modify//GEN-BEGIN:variables
private javax.swing.JLabel labelStrokeScale;
private javax.swing.JCheckBox strokeScaleCheckbox;
// End of variables declaration//GEN-END:variables
public UIExporterSVGPanel() {
... |
strokeScaleCheckbox = new javax.swing.JCheckBox();
labelStrokeScale = new javax.swing.JLabel();
strokeScaleCheckbox.setText(org.openide.util.NbBundle
.getMessage(UIExporterSVGPanel.class, "UIExporterSVGPanel.strokeScaleCheckbox.text")); // NOI18N
labelStrokeScale.setFont(... | 315 | 517 | 832 | <methods>public void <init>() ,public void <init>(java.awt.LayoutManager) ,public void <init>(boolean) ,public void <init>(java.awt.LayoutManager, boolean) ,public javax.accessibility.AccessibleContext getAccessibleContext() ,public javax.swing.plaf.PanelUI getUI() ,public java.lang.String getUIClassID() ,public void s... |
gephi_gephi | gephi/modules/PreviewPlugin/src/main/java/org/gephi/preview/plugin/builders/AbstractLabelBuilder.java | AbstractLabelBuilder | getLabel | class AbstractLabelBuilder {
protected String getLabel(Element e, Column[] cols, GraphView view) {<FILL_FUNCTION_BODY>}
} |
StringBuilder str = new StringBuilder();
if (cols != null) {
int i = 0;
for (Column c : cols) {
if (i++ > 0) {
str.append(" - ");
}
Object val = e.getAttribute(c, view);
str.append(val != null ? ... | 41 | 142 | 183 | <no_super_class> |
gephi_gephi | gephi/modules/PreviewPlugin/src/main/java/org/gephi/preview/plugin/builders/EdgeBuilder.java | EdgeBuilder | getItems | class EdgeBuilder implements ItemBuilder {
@Override
public Item[] getItems(Graph graph) {<FILL_FUNCTION_BODY>}
@Override
public String getType() {
return ItemBuilder.EDGE_BUILDER;
}
} |
EdgeItem[] items = new EdgeItem[graph.getEdgeCount()];
int i = 0;
for (Edge e : graph.getEdges()) {
EdgeItem item = new EdgeItem(e);
item.setData(EdgeItem.WEIGHT, e.getWeight(graph.getView()));
item.setData(EdgeItem.DIRECTED, e.isDirected());
if ... | 68 | 214 | 282 | <no_super_class> |
gephi_gephi | gephi/modules/PreviewPlugin/src/main/java/org/gephi/preview/plugin/builders/EdgeLabelBuilder.java | EdgeLabelBuilder | getItems | class EdgeLabelBuilder extends AbstractLabelBuilder implements ItemBuilder {
@Override
public Item[] getItems(Graph graph) {<FILL_FUNCTION_BODY>}
@Override
public String getType() {
return ItemBuilder.EDGE_LABEL_BUILDER;
}
} |
//Build text
VisualizationController vizController = Lookup.getDefault().lookup(VisualizationController.class);
Workspace workspace = WorkspaceHelper.getWorkspace(graph);
Column[] edgeColumns = vizController != null ? vizController.getEdgeTextColumns(workspace) : null;
List<Ite... | 77 | 422 | 499 | <methods>public non-sealed void <init>() <variables> |
gephi_gephi | gephi/modules/PreviewPlugin/src/main/java/org/gephi/preview/plugin/builders/NodeBuilder.java | NodeBuilder | getItems | class NodeBuilder implements ItemBuilder {
@Override
public Item[] getItems(Graph graph) {<FILL_FUNCTION_BODY>}
@Override
public String getType() {
return ItemBuilder.NODE_BUILDER;
}
} |
Item[] items = new NodeItem[graph.getNodeCount()];
int i = 0;
for (Node n : graph.getNodes()) {
NodeItem nodeItem = new NodeItem(n);
nodeItem.setData(NodeItem.X, n.x());
nodeItem.setData(NodeItem.Y, -n.y());
nodeItem.setData(NodeItem.Z, n.z());
... | 67 | 165 | 232 | <no_super_class> |
gephi_gephi | gephi/modules/PreviewPlugin/src/main/java/org/gephi/preview/plugin/builders/NodeLabelBuilder.java | NodeLabelBuilder | getItems | class NodeLabelBuilder extends AbstractLabelBuilder implements ItemBuilder {
@Override
public Item[] getItems(Graph graph) {<FILL_FUNCTION_BODY>}
@Override
public String getType() {
return ItemBuilder.NODE_LABEL_BUILDER;
}
} |
//Build text
VisualizationController vizController = Lookup.getDefault().lookup(VisualizationController.class);
Workspace workspace = WorkspaceHelper.getWorkspace(graph);
Column[] nodeColumns = workspace != null && vizController != null ? vizController.getNodeTextColumns(workspace) : nu... | 76 | 512 | 588 | <methods>public non-sealed void <init>() <variables> |
gephi_gephi | gephi/modules/PreviewPlugin/src/main/java/org/gephi/preview/plugin/builders/WorkspaceHelper.java | WorkspaceHelper | getWorkspace | class WorkspaceHelper {
/**
* Hack functions that allows to get the Workspace from a given graph.
*
* @param graph graph
* @return workspace this graph belongs to
*/
public static Workspace getWorkspace(Graph graph) {<FILL_FUNCTION_BODY>}
} |
ProjectController projectController = Lookup.getDefault().lookup(ProjectController.class);
if (projectController.getCurrentProject() == null) {
return null;
}
WorkspaceProvider workspaceProvider =
projectController.getCurrentProject().getLookup().lookup(Workspace... | 80 | 159 | 239 | <no_super_class> |
gephi_gephi | gephi/modules/PreviewPlugin/src/main/java/org/gephi/preview/plugin/renderers/PDFUtils.java | PDFUtils | bezierArc | class PDFUtils {
public static void drawCircle(PDPageContentStream stream, final float x, final float y, final float r)
throws IOException {
float b = 0.5523f;
stream.moveTo(x + r, y);
stream.curveTo(x + r, y + r * b, x + r * b, y + r, x, y + r);
stream.curveTo(x - r * b, y ... |
float tmp;
if (x1 > x2) {
tmp = x1;
x1 = x2;
x2 = tmp;
}
if (y2 > y1) {
tmp = y1;
y1 = y2;
y2 = tmp;
}
float fragAngle;
int Nfrag;
if (Math.abs(extent) <= 90f) {
fragAngl... | 550 | 782 | 1,332 | <no_super_class> |
gephi_gephi | gephi/modules/ProjectAPI/src/main/java/org/gephi/project/api/GephiFormatException.java | GephiFormatException | getLocalizedMessage | class GephiFormatException extends RuntimeException {
private Throwable cause;
private String message;
private boolean isImport = false;
public GephiFormatException(Class source, Throwable cause) {
super(cause);
this.cause = cause;
if (source.equals(GephiReader.class) || source... |
if (this.cause == null) {
return message;
}
Object[] params = new Object[4];
params[0] = cause.getClass().getSimpleName();
params[1] = cause.getLocalizedMessage();
StackTraceElement[] stackTrace = cause.getStackTrace();
if (stackTrace != null && sta... | 210 | 246 | 456 | <methods>public void <init>() ,public void <init>(java.lang.String) ,public void <init>(java.lang.Throwable) ,public void <init>(java.lang.String, java.lang.Throwable) <variables>static final long serialVersionUID |
gephi_gephi | gephi/modules/ProjectAPI/src/main/java/org/gephi/project/impl/ProjectImpl.java | ProjectImpl | toString | class ProjectImpl implements Project, Comparable<ProjectImpl>, Lookup.Provider {
//Workspace ids
private final AtomicInteger workspaceIds;
//Lookup
private final transient InstanceContent instanceContent;
private final transient AbstractLookup lookup;
private final WorkspaceProviderImpl worksp... |
return "ProjectImpl {" +
"uniqueIdentifier='" + uniqueIdentifier + '\'' +
'}';
| 1,355 | 30 | 1,385 | <no_super_class> |
gephi_gephi | gephi/modules/ProjectAPI/src/main/java/org/gephi/project/impl/ProjectInformationImpl.java | ProjectInformationImpl | close | class ProjectInformationImpl implements ProjectInformation {
//Data
private final Project project;
//Event
private final transient List<PropertyChangeListener> listeners;
private String name;
private Status status = Status.CLOSED;
private File file;
public ProjectInformationImpl(Projec... |
Status oldStatus = status;
status = Status.CLOSED;
fireChangeEvent(ProjectInformation.EVENT_CLOSE, oldStatus, status);
| 740 | 41 | 781 | <no_super_class> |
gephi_gephi | gephi/modules/ProjectAPI/src/main/java/org/gephi/project/impl/ProjectMetaDataImpl.java | ProjectMetaDataImpl | hashCode | class ProjectMetaDataImpl implements ProjectMetaData {
private String author;
private String title = "";
private String keywords = "";
private String description = "";
public ProjectMetaDataImpl() {
String username = System.getProperty("user.name");
if (username != null) {
... |
int result = author != null ? author.hashCode() : 0;
result = 31 * result + (title != null ? title.hashCode() : 0);
result = 31 * result + (keywords != null ? keywords.hashCode() : 0);
result = 31 * result + (description != null ? description.hashCode() : 0);
return result;
| 472 | 100 | 572 | <no_super_class> |
gephi_gephi | gephi/modules/ProjectAPI/src/main/java/org/gephi/project/impl/ProjectsImpl.java | ProjectsImpl | saveProjects | class ProjectsImpl implements Projects {
//Project
private final List<ProjectImpl> projects;
//Workspace ids
private ProjectImpl currentProject;
public ProjectsImpl() {
projects = new ArrayList<>();
}
public void addProject(ProjectImpl project) {
synchronized (projects) {
... |
synchronized (projects) {
try (FileOutputStream fos = new FileOutputStream(file)) {
XMLStreamWriter writer = SaveTask.newXMLWriter(fos);
writer.writeStartDocument("UTF-8", "1.0");
writer.writeStartElement("projects");
for (ProjectImpl ... | 1,426 | 330 | 1,756 | <no_super_class> |
gephi_gephi | gephi/modules/ProjectAPI/src/main/java/org/gephi/project/impl/WorkspaceImpl.java | WorkspaceImpl | toString | class WorkspaceImpl implements Workspace {
private final transient InstanceContent instanceContent;
private final transient Lookup lookup;
private final int id;
private final ProjectImpl project;
private final WorkspaceInformationImpl workspaceInformation;
private final WorkspaceMetaDataImpl wo... |
WorkspaceInformationImpl information = lookup.lookup(WorkspaceInformationImpl.class);
if (information != null) {
return information.getName();
}
return "null";
| 692 | 49 | 741 | <no_super_class> |
gephi_gephi | gephi/modules/ProjectAPI/src/main/java/org/gephi/project/impl/WorkspaceInformationImpl.java | WorkspaceInformationImpl | setSource | class WorkspaceInformationImpl implements WorkspaceInformation {
//Lookup
private final transient List<PropertyChangeListener> listeners = new ArrayList<>();
private String name;
private Status status = Status.CLOSED;
private String source;
public WorkspaceInformationImpl(String name) {
... |
String oldValue = this.source;
this.source = source;
fireChangeEvent(WorkspaceInformation.EVENT_SET_SOURCE, oldValue, source);
| 672 | 43 | 715 | <no_super_class> |
gephi_gephi | gephi/modules/ProjectAPI/src/main/java/org/gephi/project/impl/WorkspaceMetaDataImpl.java | WorkspaceMetaDataImpl | equals | class WorkspaceMetaDataImpl implements WorkspaceMetaData {
private String description = "";
private String title = "";
@Override
public String getDescription() {
return description;
}
@Override
public void setDescription(String description) {
this.description = description... |
if (this == o) {
return true;
}
if (o == null || getClass() != o.getClass()) {
return false;
}
WorkspaceMetaDataImpl that = (WorkspaceMetaDataImpl) o;
if (!getDescription().equals(that.getDescription())) {
return false;
}
... | 212 | 103 | 315 | <no_super_class> |
gephi_gephi | gephi/modules/ProjectAPI/src/main/java/org/gephi/project/impl/WorkspaceProviderImpl.java | WorkspaceProviderImpl | newWorkspace | class WorkspaceProviderImpl implements WorkspaceProvider {
private final ProjectImpl project;
private final List<Workspace> workspaces;
private WorkspaceImpl currentWorkspace;
public WorkspaceProviderImpl(ProjectImpl project) {
this.project = project;
workspaces = new ArrayList<>();
... |
synchronized (workspaces) {
WorkspaceImpl workspace = new WorkspaceImpl(project, id);
workspaces.add(workspace);
return workspace;
}
| 649 | 48 | 697 | <no_super_class> |
gephi_gephi | gephi/modules/ProjectAPI/src/main/java/org/gephi/project/io/DuplicateTask.java | DuplicateTask | run | class DuplicateTask implements LongTask {
private final Workspace workspace;
private boolean cancel = false;
private ProgressTicket progressTicket;
public DuplicateTask(Workspace workspace) {
this.workspace = workspace;
}
public WorkspaceImpl run() {<FILL_FUNCTION_BODY>}
privat... |
Progress.start(progressTicket);
Progress.setDisplayName(progressTicket, NbBundle.getMessage(DuplicateTask.class, "DuplicateTask.name"));
try {
WorkspaceImpl newWorkspace = duplicateWorkspace(workspace);
Collection<WorkspacePersistenceProvider> providers = PersistencePr... | 625 | 243 | 868 | <no_super_class> |
gephi_gephi | gephi/modules/ProjectAPI/src/main/java/org/gephi/project/io/GephiReader.java | GephiReader | readProjectMetadata | class GephiReader {
static final String VERSION = "0.9";
public static ProjectImpl readProject(XMLStreamReader reader, ProjectsImpl projects) throws Exception {
ProjectImpl project = null;
boolean end = false;
while (reader.hasNext() && !end) {
Integer eventType = reader.ne... |
String property = null;
while (reader.hasNext()) {
Integer eventType = reader.next();
if (eventType.equals(XMLEvent.START_ELEMENT)) {
property = reader.getLocalName();
} else if (eventType.equals(XMLStreamReader.CHARACTERS)) {
if (prop... | 1,483 | 256 | 1,739 | <no_super_class> |
gephi_gephi | gephi/modules/ProjectAPI/src/main/java/org/gephi/project/io/GephiWriter.java | GephiWriter | writeProject | class GephiWriter {
static final String VERSION = "0.9";
public static void writeProject(XMLStreamWriter writer, Project project) throws Exception {<FILL_FUNCTION_BODY>}
public static void writeWorkspace(XMLStreamWriter writer, Workspace workspace) throws Exception {
writer.writeStartDocument("UT... |
writer.writeStartDocument("UTF-8", "1.0");
writer.writeStartElement("projectFile");
// Header
writer.writeAttribute("version", VERSION);
writer.writeStartElement("lastModifiedDate");
SimpleDateFormat sdf = new SimpleDateFormat("yyyy-MM-dd HH:mm:ss");
Calendar ca... | 654 | 468 | 1,122 | <no_super_class> |
gephi_gephi | gephi/modules/ProjectAPI/src/main/java/org/gephi/project/io/PersistenceProviderUtils.java | PersistenceProviderUtils | getPersistenceProviders | class PersistenceProviderUtils {
public static Collection<WorkspacePersistenceProvider> getPersistenceProviders() {<FILL_FUNCTION_BODY>}
} |
Map<String, WorkspacePersistenceProvider> providers = new LinkedHashMap<>();
for (WorkspacePersistenceProvider w : Lookup.getDefault().lookupAll(WorkspacePersistenceProvider.class)) {
try {
String id = w.getIdentifier();
if (id != null && !id.isEmpty()) {
... | 41 | 170 | 211 | <no_super_class> |
gephi_gephi | gephi/modules/ProjectAPI/src/main/java/org/gephi/project/io/Xml10FilterReader.java | Xml10FilterReader | read | class Xml10FilterReader extends FilterReader {
/**
* Creates filter reader which skips invalid xml characters.
*
* @param in original reader
*/
public Xml10FilterReader(Reader in) {
super(in);
}
/**
* Every overload of {@link Reader#read()} method delegates to this one... |
int read = super.read(cbuf, off, len);
/*
* If read chars are -1 then we have reach the end of the reader.
*/
if (read == -1) {
return -1;
}
/*
* pos will show the index where chars should be moved if there are gaps
* from invalid ... | 235 | 239 | 474 | <methods>public void close() throws java.io.IOException,public void mark(int) throws java.io.IOException,public boolean markSupported() ,public int read() throws java.io.IOException,public int read(char[], int, int) throws java.io.IOException,public boolean ready() throws java.io.IOException,public void reset() throws ... |
gephi_gephi | gephi/modules/SettingsUpgrader/src/main/java/org/gephi/ui/upgrader/Installer.java | Installer | importSettings | class Installer extends ModuleInstall {
@Override
public void restored() {
if (System.getProperty("org.gephi.settingsUpgrader.enabled", "true").equals("true")) {
importSettings();
}
}
public void importSettings() {<FILL_FUNCTION_BODY>}
} |
WindowManager.getDefault().invokeWhenUIReady(new Runnable() {
@Override
public void run() {
Upgrader upgrader = new Upgrader();
upgrader.upgrade();
}
});
| 83 | 60 | 143 | <no_super_class> |
gephi_gephi | gephi/modules/SettingsUpgrader/src/main/java/org/gephi/ui/upgrader/Upgrader.java | Upgrader | upgrade | class Upgrader {
private final static String UPGRADER_LAST_VERSION = "Upgrader_Last_Version";
private final static List<String> VERSION_TO_CHECK
= Arrays.asList("0.9.0", "0.9.1", "0.9.2", "0.9");
public void upgrade() {<FILL_FUNCTION_BODY>}
private boolean showRestartDialog() {
String... |
String currentVersion = getCurrentVersion();
if (currentVersion.equalsIgnoreCase("target") || currentVersion.contains("SNAPSHOT")) {
// Development version
return;
}
Logger.getLogger("").log(Level.INFO, "Current Version is {0}", currentVersion);
String l... | 723 | 381 | 1,104 | <no_super_class> |
gephi_gephi | gephi/modules/StatisticsAPI/src/main/java/org/gephi/statistics/StatisticsControllerImpl.java | StatisticsControllerImpl | execute | class StatisticsControllerImpl implements StatisticsController, Controller<StatisticsModelImpl> {
private final StatisticsBuilder[] statisticsBuilders;
public StatisticsControllerImpl() {
statisticsBuilders = Lookup.getDefault().lookupAll(StatisticsBuilder.class).toArray(new StatisticsBuilder[0]);
... |
StatisticsBuilder builder = getBuilder(statistics.getClass());
LongTaskExecutor executor = new LongTaskExecutor(true, "Statistics " + builder.getName(), 10);
if (listener != null) {
executor.setLongTaskListener(listener);
}
final StatisticsModelImpl model = getModel... | 1,498 | 257 | 1,755 | <no_super_class> |
gephi_gephi | gephi/modules/StatisticsAPI/src/main/java/org/gephi/statistics/StatisticsModelImpl.java | StatisticsModelImpl | embedImages | class StatisticsModelImpl implements StatisticsModel {
private final Workspace workspace;
private final Map<Class, String> reportMap;
public StatisticsModelImpl(Workspace workspace) {
this.workspace = workspace;
reportMap = new HashMap<>();
}
@Override
public Workspace getWork... |
StringBuilder builder = new StringBuilder();
String[] result = report.split("file:");
boolean first = true;
for (int i = 0; i < result.length; i++) {
if (result[i].contains("</IMG>")) {
String next = result[i];
String[] elements = next.split("... | 1,004 | 334 | 1,338 | <no_super_class> |
gephi_gephi | gephi/modules/StatisticsAPI/src/main/java/org/gephi/statistics/StatisticsPersistenceProvider.java | StatisticsPersistenceProvider | writeXML | class StatisticsPersistenceProvider implements WorkspaceXMLPersistenceProvider {
@Override
public void writeXML(XMLStreamWriter writer, Workspace workspace) {<FILL_FUNCTION_BODY>}
@Override
public void readXML(XMLStreamReader reader, Workspace workspace) {
StatisticsModelImpl statModel = works... |
StatisticsModelImpl statModel = workspace.getLookup().lookup(StatisticsModelImpl.class);
if (statModel != null) {
try {
statModel.writeXML(writer);
} catch (XMLStreamException ex) {
throw new RuntimeException(ex);
}
}
| 165 | 80 | 245 | <no_super_class> |
gephi_gephi | gephi/modules/StatisticsPlugin/src/main/java/org/gephi/statistics/plugin/ChartUtils.java | ChartUtils | scaleChart | class ChartUtils {
public static void decorateChart(JFreeChart chart) {
XYPlot plot = (XYPlot) chart.getPlot();
XYLineAndShapeRenderer renderer = new XYLineAndShapeRenderer();
renderer.setSeriesLinesVisible(0, false);
renderer.setSeriesShapesVisible(0, true);
renderer.setSer... |
XYPlot plot = (XYPlot) chart.getPlot();
ValueAxis domainAxis = plot.getDomainAxis();
domainAxis.setLowerMargin(1.0);
domainAxis.setUpperMargin(1.0);
domainAxis.setStandardTickUnits(NumberAxis.createIntegerTickUnits());
if (normalized) {
domainAxis.setRange(-0... | 552 | 213 | 765 | <no_super_class> |
gephi_gephi | gephi/modules/StatisticsPlugin/src/main/java/org/gephi/statistics/plugin/ColumnUtils.java | ColumnUtils | cleanUpColumns | class ColumnUtils {
/**
* Remove columns from the given table if they match the given ids but don't have the correct type.
*
* @param table table
* @param columnIds the column ids to remove
* @param type the type to check
*/
public static void cleanUpColumns(Table table, String[] columnI... |
Arrays.stream(columnIds).forEach(id -> {
Column col = table.getColumn(id);
if (col != null && !col.getTypeClass().equals(type)) {
table.removeColumn(id);
}
});
| 107 | 67 | 174 | <no_super_class> |
gephi_gephi | gephi/modules/StatisticsPlugin/src/main/java/org/gephi/statistics/plugin/GraphDensity.java | GraphDensity | calculateDensity | class GraphDensity implements Statistics {
/**
* The density of the graph.
*/
private double density;
/**
*
*/
private boolean isDirected;
public GraphDensity() {
GraphController graphController = Lookup.getDefault().lookup(GraphController.class);
if (graphContr... |
double result;
double edgesCount = graph.getEdgeCount();
double nodesCount = graph.getNodeCount();
double multiplier = 1;
if (!isGraphDirected) {
multiplier = 2;
}
result = (multiplier * edgesCount) / (nodesCount * nodesCount - nodesCount);
... | 492 | 90 | 582 | <no_super_class> |
gephi_gephi | gephi/modules/StatisticsPlugin/src/main/java/org/gephi/statistics/plugin/dynamic/DynamicClusteringCoefficient.java | DynamicClusteringCoefficient | execute | class DynamicClusteringCoefficient implements DynamicStatistics, LongTask {
public static final String DYNAMIC_AVG_CLUSTERING_COEFFICIENT = "dynamic_avg_clustering";
public static final String DYNAMIC_CLUSTERING_COEFFICIENT = "dynamic_clustering";
//Data
private GraphModel graphModel;
private doubl... |
this.graphModel = graphModel;
this.isDirected = graphModel.isDirected();
this.averages = new HashMap<>();
//Attributes cols
if (!averageOnly) {
TimeRepresentation tr = graphModel.getConfiguration().getTimeRepresentation();
Table nodeTable = graphModel.g... | 1,586 | 289 | 1,875 | <no_super_class> |
gephi_gephi | gephi/modules/StatisticsPlugin/src/main/java/org/gephi/statistics/plugin/dynamic/DynamicNbEdges.java | DynamicNbEdges | loop | class DynamicNbEdges implements DynamicStatistics {
public static final String NB_EDGES = "dynamic nbedges";
//Data
private GraphModel graphModel;
private double window;
private double tick;
private Interval bounds;
//Average
private Map<Double, Integer> counts;
@Override
publi... |
Graph graph = graphModel.getGraph(window);
int count = graph.getEdgeCount();
graphModel.getGraphVisible().setAttribute(NB_EDGES, count, interval.getLow());
graphModel.getGraphVisible().setAttribute(NB_EDGES, count, interval.getHigh());
counts.put(interval.getLow(), count);
... | 751 | 108 | 859 | <no_super_class> |
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