| """ |
| Utilities for exporting evolution traces to various formats |
| """ |
|
|
| import json |
| import logging |
| import time |
| from pathlib import Path |
| from typing import Any, Dict, List, Optional, Union |
|
|
| logger = logging.getLogger(__name__) |
|
|
|
|
| def export_traces_jsonl( |
| traces: List[Any], output_path: Union[str, Path], compress: bool = False |
| ) -> None: |
| """ |
| Export traces to JSONL format (one JSON object per line) |
| |
| Args: |
| traces: List of trace objects with to_dict() method |
| output_path: Path to save the JSONL file |
| compress: Whether to compress the output with gzip |
| """ |
| output_path = Path(output_path) |
| output_path.parent.mkdir(parents=True, exist_ok=True) |
|
|
| if compress: |
| import gzip |
|
|
| if not output_path.suffix == ".gz": |
| output_path = output_path.with_suffix(output_path.suffix + ".gz") |
| open_func = gzip.open |
| mode = "wt" |
| else: |
| open_func = open |
| mode = "w" |
|
|
| with open_func(output_path, mode) as f: |
| for trace in traces: |
| trace_dict = trace.to_dict() if hasattr(trace, "to_dict") else trace |
| json.dump(trace_dict, f) |
| f.write("\n") |
|
|
| logger.info(f"Exported {len(traces)} traces to {output_path}") |
|
|
|
|
| def export_traces_json( |
| traces: List[Any], output_path: Union[str, Path], metadata: Optional[Dict[str, Any]] = None |
| ) -> None: |
| """ |
| Export traces to JSON format with metadata |
| |
| Args: |
| traces: List of trace objects with to_dict() method |
| output_path: Path to save the JSON file |
| metadata: Optional metadata to include in the output |
| """ |
| output_path = Path(output_path) |
| output_path.parent.mkdir(parents=True, exist_ok=True) |
|
|
| |
| trace_dicts = [] |
| for trace in traces: |
| if hasattr(trace, "to_dict"): |
| trace_dicts.append(trace.to_dict()) |
| else: |
| trace_dicts.append(trace) |
|
|
| |
| output_data = {"metadata": metadata or {}, "traces": trace_dicts} |
|
|
| |
| output_data["metadata"].setdefault("total_traces", len(trace_dicts)) |
| output_data["metadata"].setdefault("exported_at", time.time()) |
|
|
| with open(output_path, "w") as f: |
| json.dump(output_data, f, indent=2) |
|
|
| logger.info(f"Exported {len(traces)} traces to {output_path}") |
|
|
|
|
| def export_traces_hdf5( |
| traces: List[Any], output_path: Union[str, Path], metadata: Optional[Dict[str, Any]] = None |
| ) -> None: |
| """ |
| Export traces to HDF5 format |
| |
| Args: |
| traces: List of trace objects with to_dict() method |
| output_path: Path to save the HDF5 file |
| metadata: Optional metadata to include in the output |
| """ |
| try: |
| import h5py |
| import numpy as np |
| except ImportError: |
| logger.error("h5py is required for HDF5 export. Install with: pip install h5py") |
| raise ImportError("h5py not installed") |
|
|
| output_path = Path(output_path) |
| output_path.parent.mkdir(parents=True, exist_ok=True) |
|
|
| with h5py.File(output_path, "w") as f: |
| |
| traces_group = f.create_group("traces") |
| meta_group = f.create_group("metadata") |
|
|
| |
| if metadata: |
| for key, value in metadata.items(): |
| if isinstance(value, (str, int, float, bool)): |
| meta_group.attrs[key] = value |
| else: |
| meta_group.attrs[key] = json.dumps(value) |
|
|
| meta_group.attrs["total_traces"] = len(traces) |
| meta_group.attrs["exported_at"] = time.time() |
|
|
| |
| for i, trace in enumerate(traces): |
| trace_dict = trace.to_dict() if hasattr(trace, "to_dict") else trace |
| trace_group = traces_group.create_group(f"trace_{i:06d}") |
|
|
| for key, value in trace_dict.items(): |
| if value is None: |
| continue |
|
|
| if isinstance(value, dict): |
| |
| trace_group.attrs[key] = json.dumps(value) |
| elif isinstance(value, list): |
| |
| try: |
| arr = np.array(value) |
| trace_group.create_dataset(key, data=arr) |
| except (ValueError, TypeError): |
| |
| trace_group.attrs[key] = json.dumps(value) |
| elif isinstance(value, str): |
| |
| trace_group.attrs[key] = value |
| elif isinstance(value, (int, float, bool)): |
| |
| trace_group.attrs[key] = value |
| else: |
| |
| trace_group.attrs[key] = json.dumps(value) |
|
|
| logger.info(f"Exported {len(traces)} traces to {output_path}") |
|
|
|
|
| def append_trace_jsonl(trace: Any, output_path: Union[str, Path], compress: bool = False) -> None: |
| """ |
| Append a single trace to a JSONL file |
| |
| Args: |
| trace: Trace object with to_dict() method |
| output_path: Path to the JSONL file |
| compress: Whether the file is compressed with gzip |
| """ |
| output_path = Path(output_path) |
|
|
| if compress: |
| import gzip |
|
|
| if not output_path.suffix == ".gz": |
| output_path = output_path.with_suffix(output_path.suffix + ".gz") |
| open_func = gzip.open |
| mode = "at" |
| else: |
| open_func = open |
| mode = "a" |
|
|
| trace_dict = trace.to_dict() if hasattr(trace, "to_dict") else trace |
|
|
| with open_func(output_path, mode) as f: |
| json.dump(trace_dict, f) |
| f.write("\n") |
|
|
|
|
| def load_traces_jsonl(input_path: Union[str, Path], compress: bool = False) -> List[Dict[str, Any]]: |
| """ |
| Load traces from a JSONL file |
| |
| Args: |
| input_path: Path to the JSONL file |
| compress: Whether the file is compressed with gzip |
| |
| Returns: |
| List of trace dictionaries |
| """ |
| input_path = Path(input_path) |
|
|
| if compress or input_path.suffix == ".gz": |
| import gzip |
|
|
| open_func = gzip.open |
| mode = "rt" |
| else: |
| open_func = open |
| mode = "r" |
|
|
| traces = [] |
| with open_func(input_path, mode) as f: |
| for line in f: |
| if line.strip(): |
| traces.append(json.loads(line)) |
|
|
| return traces |
|
|
|
|
| def load_traces_json(input_path: Union[str, Path]) -> tuple[List[Dict[str, Any]], Dict[str, Any]]: |
| """ |
| Load traces from a JSON file |
| |
| Args: |
| input_path: Path to the JSON file |
| |
| Returns: |
| Tuple of (traces list, metadata dict) |
| """ |
| with open(input_path, "r") as f: |
| data = json.load(f) |
|
|
| traces = data.get("traces", []) |
| metadata = data.get("metadata", {}) |
|
|
| return traces, metadata |
|
|
|
|
| def load_traces_hdf5(input_path: Union[str, Path]) -> tuple[List[Dict[str, Any]], Dict[str, Any]]: |
| """ |
| Load traces from an HDF5 file |
| |
| Args: |
| input_path: Path to the HDF5 file |
| |
| Returns: |
| Tuple of (traces list, metadata dict) |
| """ |
| try: |
| import h5py |
| except ImportError: |
| logger.error("h5py is required for HDF5 loading. Install with: pip install h5py") |
| raise ImportError("h5py not installed") |
|
|
| traces = [] |
| metadata = {} |
|
|
| with h5py.File(input_path, "r") as f: |
| |
| if "metadata" in f: |
| meta_group = f["metadata"] |
| for key in meta_group.attrs: |
| value = meta_group.attrs[key] |
| |
| if isinstance(value, str) and value.startswith("{"): |
| try: |
| metadata[key] = json.loads(value) |
| except json.JSONDecodeError: |
| metadata[key] = value |
| else: |
| metadata[key] = value |
|
|
| |
| if "traces" in f: |
| traces_group = f["traces"] |
| for trace_name in sorted(traces_group.keys()): |
| trace_group = traces_group[trace_name] |
| trace_dict = {} |
|
|
| |
| for key in trace_group.attrs: |
| value = trace_group.attrs[key] |
| |
| if isinstance(value, str) and (value.startswith("{") or value.startswith("[")): |
| try: |
| trace_dict[key] = json.loads(value) |
| except json.JSONDecodeError: |
| trace_dict[key] = value |
| else: |
| trace_dict[key] = value |
|
|
| |
| for key in trace_group.keys(): |
| dataset = trace_group[key] |
| trace_dict[key] = dataset[...].tolist() |
|
|
| traces.append(trace_dict) |
|
|
| return traces, metadata |
|
|
|
|
| def export_traces( |
| traces: List[Any], |
| output_path: Union[str, Path], |
| format: str = "jsonl", |
| compress: bool = False, |
| metadata: Optional[Dict[str, Any]] = None, |
| ) -> None: |
| """ |
| Export traces to specified format |
| |
| Args: |
| traces: List of trace objects |
| output_path: Path to save the file |
| format: Output format ('jsonl', 'json', 'hdf5') |
| compress: Whether to compress output (jsonl only) |
| metadata: Optional metadata (json and hdf5 only) |
| """ |
| format = format.lower() |
|
|
| if format == "jsonl": |
| export_traces_jsonl(traces, output_path, compress=compress) |
| elif format == "json": |
| export_traces_json(traces, output_path, metadata=metadata) |
| elif format == "hdf5": |
| export_traces_hdf5(traces, output_path, metadata=metadata) |
| else: |
| raise ValueError(f"Unsupported format: {format}. Use 'jsonl', 'json', or 'hdf5'") |
|
|
|
|
| def load_traces( |
| input_path: Union[str, Path], format: Optional[str] = None |
| ) -> Union[List[Dict[str, Any]], tuple[List[Dict[str, Any]], Dict[str, Any]]]: |
| """ |
| Load traces from file, auto-detecting format if not specified |
| |
| Args: |
| input_path: Path to the file |
| format: Optional format ('jsonl', 'json', 'hdf5'). Auto-detected if None. |
| |
| Returns: |
| For JSONL: List of trace dictionaries |
| For JSON/HDF5: Tuple of (traces list, metadata dict) |
| """ |
| input_path = Path(input_path) |
|
|
| |
| if format is None: |
| if input_path.suffix in [".jsonl", ".gz"]: |
| format = "jsonl" |
| elif input_path.suffix == ".json": |
| format = "json" |
| elif input_path.suffix in [".h5", ".hdf5"]: |
| format = "hdf5" |
| else: |
| |
| with open(input_path, "rb") as f: |
| first_bytes = f.read(10) |
| if first_bytes.startswith(b"\x89HDF"): |
| format = "hdf5" |
| elif first_bytes.startswith(b"{"): |
| |
| f.seek(0) |
| content = f.read(1000) |
| if b"\n{" in content or b"\n[" in content: |
| format = "jsonl" |
| else: |
| format = "json" |
| else: |
| format = "jsonl" |
|
|
| format = format.lower() |
|
|
| if format == "jsonl": |
| return load_traces_jsonl(input_path, compress=input_path.suffix == ".gz") |
| elif format == "json": |
| return load_traces_json(input_path) |
| elif format == "hdf5": |
| return load_traces_hdf5(input_path) |
| else: |
| raise ValueError(f"Unsupported format: {format}") |
|
|