import copy from typing import List import numpy as np import torch import torchvision.transforms as transforms import torchvision.transforms.functional as TF from transformers import BertTokenizerFast, DistilBertTokenizerFast from data_augmentation.randaugment import FIX_MATCH_AUGMENTATION_POOL, RandAugment _DEFAULT_IMAGE_TENSOR_NORMALIZATION_MEAN = [0.485, 0.456, 0.406] _DEFAULT_IMAGE_TENSOR_NORMALIZATION_STD = [0.229, 0.224, 0.225] def initialize_transform( transform_name, config, dataset, is_training, additional_transform_name=None ): """ By default, transforms should take in `x` and return `transformed_x`. For transforms that take in `(x, y)` and return `(transformed_x, transformed_y)`, set `do_transform_y` to True when initializing the WILDSSubset. """ if transform_name is None: return None elif transform_name == "bert": return initialize_bert_transform(config) elif transform_name == 'rxrx1': return initialize_rxrx1_transform(is_training) # For images normalize = True if transform_name == "image_base": transform_steps = get_image_base_transform_steps(config, dataset) elif transform_name == "image_resize": transform_steps = get_image_resize_transform_steps( config, dataset ) elif transform_name == "image_resize_and_center_crop": transform_steps = get_image_resize_and_center_crop_transform_steps( config, dataset ) elif transform_name == "poverty": if not is_training: return None transform_steps = [] normalize = False else: raise ValueError(f"{transform_name} not recognized") default_normalization = transforms.Normalize( _DEFAULT_IMAGE_TENSOR_NORMALIZATION_MEAN, _DEFAULT_IMAGE_TENSOR_NORMALIZATION_STD, ) if additional_transform_name == "fixmatch": if transform_name == 'poverty': transformations = add_poverty_fixmatch_transform(config, dataset, transform_steps) else: transformations = add_fixmatch_transform( config, dataset, transform_steps, default_normalization ) transform = MultipleTransforms(transformations) elif additional_transform_name == "randaugment": if transform_name == 'poverty': transform = add_poverty_rand_augment_transform( config, dataset, transform_steps ) else: transform = add_rand_augment_transform( config, dataset, transform_steps, default_normalization ) elif additional_transform_name == "weak": transform = add_weak_transform( config, dataset, transform_steps, normalize, default_normalization ) else: if transform_name != "poverty": # The poverty data is already a tensor at this point transform_steps.append(transforms.ToTensor()) if normalize: transform_steps.append(default_normalization) transform = transforms.Compose(transform_steps) return transform def initialize_bert_transform(config): def get_bert_tokenizer(model): if model == "bert-base-uncased": return BertTokenizerFast.from_pretrained(model) elif model == "distilbert-base-uncased": return DistilBertTokenizerFast.from_pretrained(model) else: raise ValueError(f"Model: {model} not recognized.") assert "bert" in config.model assert config.max_token_length is not None tokenizer = get_bert_tokenizer(config.model) def transform(text): tokens = tokenizer( text, padding="max_length", truncation=True, max_length=config.max_token_length, return_tensors="pt", ) if config.model == "bert-base-uncased": x = torch.stack( ( tokens["input_ids"], tokens["attention_mask"], tokens["token_type_ids"], ), dim=2, ) elif config.model == "distilbert-base-uncased": x = torch.stack((tokens["input_ids"], tokens["attention_mask"]), dim=2) x = torch.squeeze(x, dim=0) # First shape dim is always 1 return x return transform def initialize_rxrx1_transform(is_training): def standardize(x: torch.Tensor) -> torch.Tensor: mean = x.mean(dim=(1, 2)) std = x.std(dim=(1, 2)) std[std == 0.] = 1. return TF.normalize(x, mean, std) t_standardize = transforms.Lambda(lambda x: standardize(x)) angles = [0, 90, 180, 270] def random_rotation(x: torch.Tensor) -> torch.Tensor: angle = angles[torch.randint(low=0, high=len(angles), size=(1,))] if angle > 0: x = TF.rotate(x, angle) return x t_random_rotation = transforms.Lambda(lambda x: random_rotation(x)) if is_training: transforms_ls = [ t_random_rotation, transforms.RandomHorizontalFlip(), transforms.ToTensor(), t_standardize, ] else: transforms_ls = [ transforms.ToTensor(), t_standardize, ] transform = transforms.Compose(transforms_ls) return transform def get_image_base_transform_steps(config, dataset) -> List: transform_steps = [] if dataset.original_resolution is not None and min( dataset.original_resolution ) != max(dataset.original_resolution): crop_size = min(dataset.original_resolution) transform_steps.append(transforms.CenterCrop(crop_size)) if config.target_resolution is not None: transform_steps.append(transforms.Resize(config.target_resolution)) return transform_steps def get_image_resize_and_center_crop_transform_steps(config, dataset) -> List: """ Resizes the image to a slightly larger square then crops the center. """ transform_steps = get_image_resize_transform_steps(config, dataset) target_resolution = _get_target_resolution(config, dataset) transform_steps.append( transforms.CenterCrop(target_resolution), ) return transform_steps def get_image_resize_transform_steps(config, dataset) -> List: """ Resizes the image to a slightly larger square. """ assert dataset.original_resolution is not None assert config.resize_scale is not None scaled_resolution = tuple( int(res * config.resize_scale) for res in dataset.original_resolution ) return [ transforms.Resize(scaled_resolution) ] def add_fixmatch_transform(config, dataset, base_transform_steps, normalization): return ( add_weak_transform(config, dataset, base_transform_steps, True, normalization), add_rand_augment_transform(config, dataset, base_transform_steps, normalization) ) def add_poverty_fixmatch_transform(config, dataset, base_transform_steps): return ( add_weak_transform(config, dataset, base_transform_steps, False, None), add_poverty_rand_augment_transform(config, dataset, base_transform_steps) ) def add_weak_transform(config, dataset, base_transform_steps, should_normalize, normalization): # Adapted from https://github.com/YBZh/Bridging_UDA_SSL target_resolution = _get_target_resolution(config, dataset) weak_transform_steps = copy.deepcopy(base_transform_steps) weak_transform_steps.extend( [ transforms.RandomHorizontalFlip(), transforms.RandomCrop( size=target_resolution, ), ] ) if should_normalize: weak_transform_steps.append(transforms.ToTensor()) weak_transform_steps.append(normalization) return transforms.Compose(weak_transform_steps) def add_rand_augment_transform(config, dataset, base_transform_steps, normalization): # Adapted from https://github.com/YBZh/Bridging_UDA_SSL target_resolution = _get_target_resolution(config, dataset) strong_transform_steps = copy.deepcopy(base_transform_steps) strong_transform_steps.extend( [ transforms.RandomHorizontalFlip(), transforms.RandomCrop( size=target_resolution ), RandAugment( n=config.randaugment_n, augmentation_pool=FIX_MATCH_AUGMENTATION_POOL, ), transforms.ToTensor(), normalization, ] ) return transforms.Compose(strong_transform_steps) def poverty_rgb_color_transform(ms_img, transform): from wilds.datasets.poverty_dataset import _MEANS_2009_17, _STD_DEVS_2009_17 poverty_rgb_means = np.array([_MEANS_2009_17[c] for c in ['RED', 'GREEN', 'BLUE']]).reshape((-1, 1, 1)) poverty_rgb_stds = np.array([_STD_DEVS_2009_17[c] for c in ['RED', 'GREEN', 'BLUE']]).reshape((-1, 1, 1)) def unnormalize_rgb_in_poverty_ms_img(ms_img): result = ms_img.detach().clone() result[:3] = (result[:3] * poverty_rgb_stds) + poverty_rgb_means return result def normalize_rgb_in_poverty_ms_img(ms_img): result = ms_img.detach().clone() result[:3] = (result[:3] - poverty_rgb_means) / poverty_rgb_stds return ms_img color_transform = transforms.Compose([ transforms.Lambda(lambda ms_img: unnormalize_rgb_in_poverty_ms_img(ms_img)), transform, transforms.Lambda(lambda ms_img: normalize_rgb_in_poverty_ms_img(ms_img)), ]) # The first three channels of the Poverty MS images are BGR # So we shuffle them to the standard RGB to do the ColorJitter # Before shuffling them back ms_img[:3] = color_transform(ms_img[[2,1,0]])[[2,1,0]] # bgr to rgb to bgr return ms_img def add_poverty_rand_augment_transform(config, dataset, base_transform_steps): def poverty_color_jitter(ms_img): return poverty_rgb_color_transform( ms_img, transforms.ColorJitter(brightness=0.8, contrast=0.8, saturation=0.8, hue=0.1)) def ms_cutout(ms_img): def _sample_uniform(a, b): return torch.empty(1).uniform_(a, b).item() assert ms_img.shape[1] == ms_img.shape[2] img_width = ms_img.shape[1] cutout_width = _sample_uniform(0, img_width/2) cutout_center_x = _sample_uniform(0, img_width) cutout_center_y = _sample_uniform(0, img_width) x0 = int(max(0, cutout_center_x - cutout_width/2)) y0 = int(max(0, cutout_center_y - cutout_width/2)) x1 = int(min(img_width, cutout_center_x + cutout_width/2)) y1 = int(min(img_width, cutout_center_y + cutout_width/2)) # Fill with 0 because the data is already normalized to mean zero ms_img[:, x0:x1, y0:y1] = 0 return ms_img target_resolution = _get_target_resolution(config, dataset) strong_transform_steps = copy.deepcopy(base_transform_steps) strong_transform_steps.extend([ transforms.RandomHorizontalFlip(), transforms.RandomVerticalFlip(), transforms.RandomAffine(degrees=10, translate=(0.1, 0.1), shear=0.1, scale=(0.9, 1.1)), transforms.Lambda(lambda ms_img: poverty_color_jitter(ms_img)), transforms.Lambda(lambda ms_img: ms_cutout(ms_img)), # transforms.Lambda(lambda ms_img: viz(ms_img)), ]) return transforms.Compose(strong_transform_steps) def _get_target_resolution(config, dataset): if config.target_resolution is not None: return config.target_resolution else: return dataset.original_resolution class MultipleTransforms(object): """When multiple transformations of the same data need to be returned.""" def __init__(self, transformations): self.transformations = transformations def __call__(self, x): return tuple(transform(x) for transform in self.transformations)