#!/usr/bin/env python3 """Create the cross validation split files and their nested training fractions.""" import argparse import os from auto_detect_breast_mri.config import resolve_path from auto_detect_breast_mri.data.splits import (create_fraction_train_files, stratified_split_train_test_eval) def main(): """ Create the cross validation split files and their nested training fractions. Paths come from the command line, or from the site config (see config.example.yaml) when an argument is omitted: python scripts/data_utils/make_splits.py --split-root --metadata-file """ parser = argparse.ArgumentParser(description="Create cross validation split files.") parser.add_argument("--split-root", default=None, help="folder the split files are written to. Config key: split_root") parser.add_argument("--metadata-file", default=None, help="metadata export with the label columns. Config key: metadata_file") parser.add_argument("--fold", type=int, default=0) parser.add_argument("--subfold", type=int, default=0) parser.add_argument("--fractions", type=float, nargs="+", default=[0.05, 0.1, 0.25, 0.5], help="training fractions to generate. Default: 0.05 0.1 0.25 0.5") args = parser.parse_args() split_root = resolve_path(args.split_root, "split_root", "folder for the split files") metadata_file = resolve_path(args.metadata_file, "metadata_file", "metadata export") if not split_root.endswith(os.sep): split_root += os.sep training_set_location = stratified_split_train_test_eval(split_root, metadata_file) training_file = training_set_location.format(args.fold, args.fold, args.subfold) create_fraction_train_files(training_file, args.fractions) print(f"Wrote split files and fractions {args.fractions} under {split_root}") if __name__ == '__main__': main()