Upload 3 files
Browse files- .gitattributes +1 -0
- DPA-3.2-5M.pt +3 -0
- input_finetune.json +105 -0
- input_pretrain.json +3 -0
.gitattributes
CHANGED
|
@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
|
|
| 33 |
*.zip filter=lfs diff=lfs merge=lfs -text
|
| 34 |
*.zst filter=lfs diff=lfs merge=lfs -text
|
| 35 |
*tfevents* filter=lfs diff=lfs merge=lfs -text
|
|
|
|
|
|
| 33 |
*.zip filter=lfs diff=lfs merge=lfs -text
|
| 34 |
*.zst filter=lfs diff=lfs merge=lfs -text
|
| 35 |
*tfevents* filter=lfs diff=lfs merge=lfs -text
|
| 36 |
+
input_pretrain.json filter=lfs diff=lfs merge=lfs -text
|
DPA-3.2-5M.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:fe620704a11022c4abaeeed4865da6c60ec80c3daa4be6926d4e7966e6ab923f
|
| 3 |
+
size 64800654
|
input_finetune.json
ADDED
|
@@ -0,0 +1,105 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"_comment": "that's all",
|
| 3 |
+
"model": {
|
| 4 |
+
"type_map": [
|
| 5 |
+
"O",
|
| 6 |
+
"H"
|
| 7 |
+
],
|
| 8 |
+
"descriptor": {
|
| 9 |
+
"type": "dpa3",
|
| 10 |
+
"repflow": {
|
| 11 |
+
"n_dim": 128,
|
| 12 |
+
"e_dim": 64,
|
| 13 |
+
"a_dim": 32,
|
| 14 |
+
"nlayers": 24,
|
| 15 |
+
"e_rcut": 6.0,
|
| 16 |
+
"e_rcut_smth": 5.3,
|
| 17 |
+
"e_sel": 1200,
|
| 18 |
+
"a_rcut": 4.0,
|
| 19 |
+
"a_rcut_smth": 3.5,
|
| 20 |
+
"a_sel": 300,
|
| 21 |
+
"axis_neuron": 4,
|
| 22 |
+
"skip_stat": true,
|
| 23 |
+
"a_compress_rate": 1,
|
| 24 |
+
"a_compress_e_rate": 2,
|
| 25 |
+
"a_compress_use_split": true,
|
| 26 |
+
"update_angle": true,
|
| 27 |
+
"smooth_edge_update": true,
|
| 28 |
+
"edge_use_dist": true,
|
| 29 |
+
"use_dynamic_sel": true,
|
| 30 |
+
"sel_reduce_factor": 10.0,
|
| 31 |
+
"use_env_envelope": true,
|
| 32 |
+
"update_style": "res_residual",
|
| 33 |
+
"update_residual": 0.1,
|
| 34 |
+
"update_residual_init": "const"
|
| 35 |
+
},
|
| 36 |
+
"activation_function": "custom_silu:3.0",
|
| 37 |
+
"precision": "float32",
|
| 38 |
+
"use_tebd_bias": false,
|
| 39 |
+
"concat_output_tebd": false
|
| 40 |
+
},
|
| 41 |
+
"fitting_net": {
|
| 42 |
+
"neuron": [
|
| 43 |
+
240,
|
| 44 |
+
240,
|
| 45 |
+
240
|
| 46 |
+
],
|
| 47 |
+
"numb_fparam": 2,
|
| 48 |
+
"default_fparam": [
|
| 49 |
+
0.0,
|
| 50 |
+
1.0
|
| 51 |
+
],
|
| 52 |
+
"activation_function": "custom_silu:3.0",
|
| 53 |
+
"resnet_dt": true,
|
| 54 |
+
"precision": "float32",
|
| 55 |
+
"dim_case_embd": 23,
|
| 56 |
+
"seed": 1,
|
| 57 |
+
"_comment": " that's all"
|
| 58 |
+
},
|
| 59 |
+
"_comment": " that's all"
|
| 60 |
+
},
|
| 61 |
+
"learning_rate": {
|
| 62 |
+
"type": "exp",
|
| 63 |
+
"decay_steps": 5000,
|
| 64 |
+
"start_lr": 0.001,
|
| 65 |
+
"stop_lr": 3e-5,
|
| 66 |
+
"_comment": "that's all"
|
| 67 |
+
},
|
| 68 |
+
"loss": {
|
| 69 |
+
"type": "ener",
|
| 70 |
+
"start_pref_e": 0.2,
|
| 71 |
+
"limit_pref_e": 20,
|
| 72 |
+
"start_pref_f": 100,
|
| 73 |
+
"limit_pref_f": 60,
|
| 74 |
+
"start_pref_v": 0.02,
|
| 75 |
+
"limit_pref_v": 1,
|
| 76 |
+
"_comment": " that's all"
|
| 77 |
+
},
|
| 78 |
+
"training": {
|
| 79 |
+
"stat_file": "./dpa3.hdf5",
|
| 80 |
+
"training_data": {
|
| 81 |
+
"systems": [
|
| 82 |
+
"../data/data_0",
|
| 83 |
+
"../data/data_1",
|
| 84 |
+
"../data/data_2"
|
| 85 |
+
],
|
| 86 |
+
"batch_size": 1,
|
| 87 |
+
"_comment": "that's all"
|
| 88 |
+
},
|
| 89 |
+
"validation_data": {
|
| 90 |
+
"systems": [
|
| 91 |
+
"../data/data_3"
|
| 92 |
+
],
|
| 93 |
+
"batch_size": 1,
|
| 94 |
+
"_comment": "that's all"
|
| 95 |
+
},
|
| 96 |
+
"numb_steps": 1000000,
|
| 97 |
+
"warmup_steps": 0,
|
| 98 |
+
"gradient_max_norm": 5.0,
|
| 99 |
+
"seed": 10,
|
| 100 |
+
"disp_file": "lcurve.out",
|
| 101 |
+
"disp_freq": 100,
|
| 102 |
+
"save_freq": 2000,
|
| 103 |
+
"_comment": "that's all"
|
| 104 |
+
}
|
| 105 |
+
}
|
input_pretrain.json
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:0a5ede12ed77a2f139eda9d0648a837230b8e89adb014c8ae02a54835421fb8a
|
| 3 |
+
size 20062016
|