absternator commited on
Commit
95e68b4
·
verified ·
1 Parent(s): e3c55cf

remove sub prevalene

Browse files
prevalence/preprocessing_config.json CHANGED
@@ -20,6 +20,7 @@
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  "lsm",
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  "routine"
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  ],
 
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  "intervention_day": 3285,
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  "predictor": "prevalence",
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  "eps_prevalence": 1e-05,
 
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  "lsm",
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  "routine"
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  ],
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+ "window_size": 14,
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  "intervention_day": 3285,
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  "predictor": "prevalence",
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  "eps_prevalence": 1e-05,
prevalence/prevalence/checkpoint/0/_CHECKPOINT_METADATA DELETED
@@ -1 +0,0 @@
1
- {"item_handlers": {"model": "orbax.checkpoint.experimental.v1._src.handlers.pytree_handler.PyTreeHandler"}, "metrics": {}, "performance_metrics": {}, "init_timestamp_nsecs": 1781690568898697676, "commit_timestamp_nsecs": 1781690569030953030, "custom_metadata": {}}
 
 
prevalence/prevalence/checkpoint/0/model/_METADATA DELETED
@@ -1 +0,0 @@
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