siRBench-model / feature_artifacts.json
dimostzim's picture
Initial siRBench model artifacts
de55a73
{
"categories": [
[
"Huesken",
"Simone",
"amarz",
"hsieh",
"khvorova",
"reynolds",
"vickers"
],
[
"h1299",
"halacat",
"hek293",
"hek293t",
"hep3b",
"t24"
]
],
"category_feature_names": [
"source_Huesken",
"source_Simone",
"source_amarz",
"source_hsieh",
"source_khvorova",
"source_reynolds",
"source_vickers",
"cell_line_h1299",
"cell_line_halacat",
"cell_line_hek293",
"cell_line_hek293t",
"cell_line_hep3b",
"cell_line_t24"
],
"numeric_cols": [
"ends",
"DG_total",
"DH_total",
"DG_pos1",
"DG_pos2",
"DG_pos3",
"DG_pos4",
"DG_pos5",
"DG_pos6",
"DG_pos7",
"DG_pos8",
"DG_pos9",
"DG_pos10",
"DG_pos11",
"DG_pos12",
"DG_pos13",
"DG_pos14",
"DG_pos15",
"DG_pos16",
"DG_pos17",
"DG_pos18",
"DH_pos1",
"DH_pos2",
"DH_pos3",
"DH_pos4",
"DH_pos5",
"DH_pos6",
"DH_pos7",
"DH_pos8",
"DH_pos9",
"DH_pos10",
"DH_pos11",
"DH_pos12",
"DH_pos13",
"DH_pos14",
"DH_pos15",
"DH_pos16",
"DH_pos17",
"DH_pos18",
"single_energy_total",
"single_energy_pos1",
"single_energy_pos2",
"single_energy_pos3",
"single_energy_pos4",
"single_energy_pos5",
"single_energy_pos6",
"single_energy_pos7",
"single_energy_pos8",
"single_energy_pos9",
"single_energy_pos10",
"single_energy_pos11",
"single_energy_pos12",
"single_energy_pos13",
"single_energy_pos14",
"single_energy_pos15",
"single_energy_pos16",
"single_energy_pos17",
"single_energy_pos18",
"single_energy_pos19",
"duplex_energy_total",
"duplex_energy_sirna_pos1",
"duplex_energy_sirna_pos2",
"duplex_energy_sirna_pos3",
"duplex_energy_sirna_pos4",
"duplex_energy_sirna_pos5",
"duplex_energy_sirna_pos6",
"duplex_energy_sirna_pos7",
"duplex_energy_sirna_pos8",
"duplex_energy_sirna_pos9",
"duplex_energy_sirna_pos10",
"duplex_energy_sirna_pos11",
"duplex_energy_sirna_pos12",
"duplex_energy_sirna_pos13",
"duplex_energy_sirna_pos14",
"duplex_energy_sirna_pos15",
"duplex_energy_sirna_pos16",
"duplex_energy_sirna_pos17",
"duplex_energy_sirna_pos18",
"duplex_energy_sirna_pos19",
"duplex_energy_target_pos1",
"duplex_energy_target_pos2",
"duplex_energy_target_pos3",
"duplex_energy_target_pos4",
"duplex_energy_target_pos5",
"duplex_energy_target_pos6",
"duplex_energy_target_pos7",
"duplex_energy_target_pos8",
"duplex_energy_target_pos9",
"duplex_energy_target_pos10",
"duplex_energy_target_pos11",
"duplex_energy_target_pos12",
"duplex_energy_target_pos13",
"duplex_energy_target_pos14",
"duplex_energy_target_pos15",
"duplex_energy_target_pos16",
"duplex_energy_target_pos17",
"duplex_energy_target_pos18",
"duplex_energy_target_pos19",
"RNAup_open_dG",
"RNAup_interaction_dG"
],
"feature_names": [
"siRNA_pos1_A",
"siRNA_pos1_C",
"siRNA_pos1_G",
"siRNA_pos1_U",
"siRNA_pos2_A",
"siRNA_pos2_C",
"siRNA_pos2_G",
"siRNA_pos2_U",
"siRNA_pos3_A",
"siRNA_pos3_C",
"siRNA_pos3_G",
"siRNA_pos3_U",
"siRNA_pos4_A",
"siRNA_pos4_C",
"siRNA_pos4_G",
"siRNA_pos4_U",
"siRNA_pos5_A",
"siRNA_pos5_C",
"siRNA_pos5_G",
"siRNA_pos5_U",
"siRNA_pos6_A",
"siRNA_pos6_C",
"siRNA_pos6_G",
"siRNA_pos6_U",
"siRNA_pos7_A",
"siRNA_pos7_C",
"siRNA_pos7_G",
"siRNA_pos7_U",
"siRNA_pos8_A",
"siRNA_pos8_C",
"siRNA_pos8_G",
"siRNA_pos8_U",
"siRNA_pos9_A",
"siRNA_pos9_C",
"siRNA_pos9_G",
"siRNA_pos9_U",
"siRNA_pos10_A",
"siRNA_pos10_C",
"siRNA_pos10_G",
"siRNA_pos10_U",
"siRNA_pos11_A",
"siRNA_pos11_C",
"siRNA_pos11_G",
"siRNA_pos11_U",
"siRNA_pos12_A",
"siRNA_pos12_C",
"siRNA_pos12_G",
"siRNA_pos12_U",
"siRNA_pos13_A",
"siRNA_pos13_C",
"siRNA_pos13_G",
"siRNA_pos13_U",
"siRNA_pos14_A",
"siRNA_pos14_C",
"siRNA_pos14_G",
"siRNA_pos14_U",
"siRNA_pos15_A",
"siRNA_pos15_C",
"siRNA_pos15_G",
"siRNA_pos15_U",
"siRNA_pos16_A",
"siRNA_pos16_C",
"siRNA_pos16_G",
"siRNA_pos16_U",
"siRNA_pos17_A",
"siRNA_pos17_C",
"siRNA_pos17_G",
"siRNA_pos17_U",
"siRNA_pos18_A",
"siRNA_pos18_C",
"siRNA_pos18_G",
"siRNA_pos18_U",
"siRNA_pos19_A",
"siRNA_pos19_C",
"siRNA_pos19_G",
"siRNA_pos19_U",
"mRNA_pos1_A",
"mRNA_pos1_C",
"mRNA_pos1_G",
"mRNA_pos1_U",
"mRNA_pos2_A",
"mRNA_pos2_C",
"mRNA_pos2_G",
"mRNA_pos2_U",
"mRNA_pos3_A",
"mRNA_pos3_C",
"mRNA_pos3_G",
"mRNA_pos3_U",
"mRNA_pos4_A",
"mRNA_pos4_C",
"mRNA_pos4_G",
"mRNA_pos4_U",
"mRNA_pos5_A",
"mRNA_pos5_C",
"mRNA_pos5_G",
"mRNA_pos5_U",
"mRNA_pos6_A",
"mRNA_pos6_C",
"mRNA_pos6_G",
"mRNA_pos6_U",
"mRNA_pos7_A",
"mRNA_pos7_C",
"mRNA_pos7_G",
"mRNA_pos7_U",
"mRNA_pos8_A",
"mRNA_pos8_C",
"mRNA_pos8_G",
"mRNA_pos8_U",
"mRNA_pos9_A",
"mRNA_pos9_C",
"mRNA_pos9_G",
"mRNA_pos9_U",
"mRNA_pos10_A",
"mRNA_pos10_C",
"mRNA_pos10_G",
"mRNA_pos10_U",
"mRNA_pos11_A",
"mRNA_pos11_C",
"mRNA_pos11_G",
"mRNA_pos11_U",
"mRNA_pos12_A",
"mRNA_pos12_C",
"mRNA_pos12_G",
"mRNA_pos12_U",
"mRNA_pos13_A",
"mRNA_pos13_C",
"mRNA_pos13_G",
"mRNA_pos13_U",
"mRNA_pos14_A",
"mRNA_pos14_C",
"mRNA_pos14_G",
"mRNA_pos14_U",
"mRNA_pos15_A",
"mRNA_pos15_C",
"mRNA_pos15_G",
"mRNA_pos15_U",
"mRNA_pos16_A",
"mRNA_pos16_C",
"mRNA_pos16_G",
"mRNA_pos16_U",
"mRNA_pos17_A",
"mRNA_pos17_C",
"mRNA_pos17_G",
"mRNA_pos17_U",
"mRNA_pos18_A",
"mRNA_pos18_C",
"mRNA_pos18_G",
"mRNA_pos18_U",
"mRNA_pos19_A",
"mRNA_pos19_C",
"mRNA_pos19_G",
"mRNA_pos19_U",
"inter_wc_pos1",
"inter_wc_pos2",
"inter_wc_pos3",
"inter_wc_pos4",
"inter_wc_pos5",
"inter_wc_pos6",
"inter_wc_pos7",
"inter_wc_pos8",
"inter_wc_pos9",
"inter_wc_pos10",
"inter_wc_pos11",
"inter_wc_pos12",
"inter_wc_pos13",
"inter_wc_pos14",
"inter_wc_pos15",
"inter_wc_pos16",
"inter_wc_pos17",
"inter_wc_pos18",
"inter_wc_pos19",
"inter_wobble_pos1",
"inter_wobble_pos2",
"inter_wobble_pos3",
"inter_wobble_pos4",
"inter_wobble_pos5",
"inter_wobble_pos6",
"inter_wobble_pos7",
"inter_wobble_pos8",
"inter_wobble_pos9",
"inter_wobble_pos10",
"inter_wobble_pos11",
"inter_wobble_pos12",
"inter_wobble_pos13",
"inter_wobble_pos14",
"inter_wobble_pos15",
"inter_wobble_pos16",
"inter_wobble_pos17",
"inter_wobble_pos18",
"inter_wobble_pos19",
"inter_mismatch_pos1",
"inter_mismatch_pos2",
"inter_mismatch_pos3",
"inter_mismatch_pos4",
"inter_mismatch_pos5",
"inter_mismatch_pos6",
"inter_mismatch_pos7",
"inter_mismatch_pos8",
"inter_mismatch_pos9",
"inter_mismatch_pos10",
"inter_mismatch_pos11",
"inter_mismatch_pos12",
"inter_mismatch_pos13",
"inter_mismatch_pos14",
"inter_mismatch_pos15",
"inter_mismatch_pos16",
"inter_mismatch_pos17",
"inter_mismatch_pos18",
"inter_mismatch_pos19",
"total_wc",
"total_wobble",
"total_mismatch",
"seed_wc",
"seed_wobble",
"si_mono_A",
"si_mono_C",
"si_mono_G",
"si_mono_U",
"si_di_0",
"si_di_1",
"si_di_2",
"si_di_3",
"si_di_4",
"si_di_5",
"si_di_6",
"si_di_7",
"si_di_8",
"si_di_9",
"si_di_10",
"si_di_11",
"si_di_12",
"si_di_13",
"si_di_14",
"si_di_15",
"mr_mono_A",
"mr_mono_C",
"mr_mono_G",
"mr_mono_U",
"mr_di_0",
"mr_di_1",
"mr_di_2",
"mr_di_3",
"mr_di_4",
"mr_di_5",
"mr_di_6",
"mr_di_7",
"mr_di_8",
"mr_di_9",
"mr_di_10",
"mr_di_11",
"mr_di_12",
"mr_di_13",
"mr_di_14",
"mr_di_15",
"ends",
"DG_total",
"DH_total",
"DG_pos1",
"DG_pos2",
"DG_pos3",
"DG_pos4",
"DG_pos5",
"DG_pos6",
"DG_pos7",
"DG_pos8",
"DG_pos9",
"DG_pos10",
"DG_pos11",
"DG_pos12",
"DG_pos13",
"DG_pos14",
"DG_pos15",
"DG_pos16",
"DG_pos17",
"DG_pos18",
"DH_pos1",
"DH_pos2",
"DH_pos3",
"DH_pos4",
"DH_pos5",
"DH_pos6",
"DH_pos7",
"DH_pos8",
"DH_pos9",
"DH_pos10",
"DH_pos11",
"DH_pos12",
"DH_pos13",
"DH_pos14",
"DH_pos15",
"DH_pos16",
"DH_pos17",
"DH_pos18",
"single_energy_total",
"single_energy_pos1",
"single_energy_pos2",
"single_energy_pos3",
"single_energy_pos4",
"single_energy_pos5",
"single_energy_pos6",
"single_energy_pos7",
"single_energy_pos8",
"single_energy_pos9",
"single_energy_pos10",
"single_energy_pos11",
"single_energy_pos12",
"single_energy_pos13",
"single_energy_pos14",
"single_energy_pos15",
"single_energy_pos16",
"single_energy_pos17",
"single_energy_pos18",
"single_energy_pos19",
"duplex_energy_total",
"duplex_energy_sirna_pos1",
"duplex_energy_sirna_pos2",
"duplex_energy_sirna_pos3",
"duplex_energy_sirna_pos4",
"duplex_energy_sirna_pos5",
"duplex_energy_sirna_pos6",
"duplex_energy_sirna_pos7",
"duplex_energy_sirna_pos8",
"duplex_energy_sirna_pos9",
"duplex_energy_sirna_pos10",
"duplex_energy_sirna_pos11",
"duplex_energy_sirna_pos12",
"duplex_energy_sirna_pos13",
"duplex_energy_sirna_pos14",
"duplex_energy_sirna_pos15",
"duplex_energy_sirna_pos16",
"duplex_energy_sirna_pos17",
"duplex_energy_sirna_pos18",
"duplex_energy_sirna_pos19",
"duplex_energy_target_pos1",
"duplex_energy_target_pos2",
"duplex_energy_target_pos3",
"duplex_energy_target_pos4",
"duplex_energy_target_pos5",
"duplex_energy_target_pos6",
"duplex_energy_target_pos7",
"duplex_energy_target_pos8",
"duplex_energy_target_pos9",
"duplex_energy_target_pos10",
"duplex_energy_target_pos11",
"duplex_energy_target_pos12",
"duplex_energy_target_pos13",
"duplex_energy_target_pos14",
"duplex_energy_target_pos15",
"duplex_energy_target_pos16",
"duplex_energy_target_pos17",
"duplex_energy_target_pos18",
"duplex_energy_target_pos19",
"RNAup_open_dG",
"RNAup_interaction_dG",
"source_Huesken",
"source_Simone",
"source_amarz",
"source_hsieh",
"source_khvorova",
"source_reynolds",
"source_vickers",
"cell_line_h1299",
"cell_line_halacat",
"cell_line_hek293",
"cell_line_hek293t",
"cell_line_hep3b",
"cell_line_t24"
]
}