| { |
| "lang":"en", |
| "name":"sdoh_roberta_cui", |
| "version":"0.0.0", |
| "description":"CNN based Social determinants of health NER with a fine-grained window context bag-of-words classifier and a standard ontology extension interface (SNOMED_CT and CUI)", |
| "author":"Dima Lituiev", |
| "email":"d.lituiev@gmail.com", |
| "url":"", |
| "license":"", |
| "spacy_version":">=3.2.1,<3.3.0", |
| "spacy_git_version":"800737b41", |
| "vectors":{ |
| "width":0, |
| "vectors":0, |
| "keys":0, |
| "name":null |
| }, |
| "labels":{ |
| "transformer":[ |
|
|
| ], |
| "ner":[ |
| "Anxiety: GAD", |
| "Anxiety: Generalized Anxiety Disorder", |
| "Anxiety: Level of anxiety", |
| "Anxiety: NA", |
| "Anxiety: Signs and symptoms of anxiety", |
| "Anxiety: family hx: Anxiety state", |
| "Anxiety: hx of anxiety state", |
| "Depression: Family hx: Depression", |
| "Depression: Major depressive disorder", |
| "Depression: NA", |
| "Depression: PHQ", |
| "Depression: Symptoms of depression", |
| "Depression: hx of Depression", |
| "Financial_strain: Financial problem", |
| "Financial_strain: Financially secure", |
| "Financial_strain: NA", |
| "Financial_strain: Unable to afford medication", |
| "Food: Able to obtain food", |
| "Food: Fruit and vegetable intake", |
| "Food: NA", |
| "Housing: Homeless", |
| "Housing: Housing unsuited to needs", |
| "Housing: Marginally housed", |
| "Housing: NA", |
| "Housing: Stably housed", |
| "Housing: Subsidized housing", |
| "Housing: lives in facility", |
| "Insurance_status: Inadequate healthcare resources", |
| "Insurance_status: NA", |
| "Marital_or_partnership_status: Divorced", |
| "Marital_or_partnership_status: Engaged to be married", |
| "Marital_or_partnership_status: Married", |
| "Marital_or_partnership_status: NA", |
| "Marital_or_partnership_status: Partner", |
| "Marital_or_partnership_status: Partner relationship problem", |
| "Marital_or_partnership_status: Separated", |
| "Marital_or_partnership_status: Single person", |
| "Marital_or_partnership_status: Widowed", |
| "Social_isolation: At risk for loneliness", |
| "Social_isolation: Has social support", |
| "Social_isolation: Lives alone", |
| "Social_isolation: Lives with", |
| "Social_isolation: NA", |
| "Social_isolation: Personal relationship breakdown", |
| "Social_isolation: Social Isolation", |
| "Transportation: Has access to a car", |
| "Transportation: Has access to public transport vehicle", |
| "Transportation: NA", |
| "Transportation: Transportation problems", |
| "pain_and_disability: NA", |
| "pain_and_disability: Pain intensity rating scale, current", |
| "pain_and_disability: Pain intensity rating scale, worst" |
| ] |
| }, |
| "pipeline":[ |
| "transformer", |
| "ner", |
| "sdoh_cui" |
| ], |
| "components":[ |
| "transformer", |
| "ner", |
| "sdoh_cui" |
| ], |
| "disabled":[ |
|
|
| ], |
| "performance":{ |
| "ents_f":0.7764060357, |
| "ents_p":0.8016997167, |
| "ents_r":0.7526595745, |
| "ents_per_type":{ |
| "Marital_or_partnership_status: Divorced":{ |
| "p":0.92, |
| "r":0.7666666667, |
| "f":0.8363636364 |
| }, |
| "Marital_or_partnership_status: Single person":{ |
| "p":0.9850746269, |
| "r":1.0, |
| "f":0.992481203 |
| }, |
| "Social_isolation: Lives alone":{ |
| "p":0.875, |
| "r":0.7777777778, |
| "f":0.8235294118 |
| }, |
| "Social_isolation: Has social support":{ |
| "p":0.5740740741, |
| "r":0.4246575342, |
| "f":0.4881889764 |
| }, |
| "Housing: Stably housed":{ |
| "p":0.6612903226, |
| "r":0.6949152542, |
| "f":0.6776859504 |
| }, |
| "pain_and_disability: NA":{ |
| "p":0.8622754491, |
| "r":0.9536423841, |
| "f":0.9056603774 |
| }, |
| "pain_and_disability: Pain intensity rating scale, current":{ |
| "p":1.0, |
| "r":0.7586206897, |
| "f":0.862745098 |
| }, |
| "pain_and_disability: Pain intensity rating scale, worst":{ |
| "p":0.7586206897, |
| "r":0.6285714286, |
| "f":0.6875 |
| }, |
| "Marital_or_partnership_status: Married":{ |
| "p":0.9136690647, |
| "r":0.9007092199, |
| "f":0.9071428571 |
| }, |
| "Anxiety: hx of anxiety state":{ |
| "p":0.8305084746, |
| "r":0.8305084746, |
| "f":0.8305084746 |
| }, |
| "Depression: hx of Depression":{ |
| "p":0.8591549296, |
| "r":0.7721518987, |
| "f":0.8133333333 |
| }, |
| "Marital_or_partnership_status: Partner":{ |
| "p":0.95, |
| "r":0.9047619048, |
| "f":0.9268292683 |
| }, |
| "Social_isolation: Lives with":{ |
| "p":0.8409090909, |
| "r":0.880952381, |
| "f":0.8604651163 |
| }, |
| "Depression: Major depressive disorder":{ |
| "p":0.4, |
| "r":0.2, |
| "f":0.2666666667 |
| }, |
| "Depression: Symptoms of depression":{ |
| "p":0.6447368421, |
| "r":0.7903225806, |
| "f":0.7101449275 |
| }, |
| "Anxiety: Signs and symptoms of anxiety":{ |
| "p":0.72, |
| "r":0.8571428571, |
| "f":0.7826086957 |
| }, |
| "Depression: NA":{ |
| "p":0.0, |
| "r":0.0, |
| "f":0.0 |
| }, |
| "Marital_or_partnership_status: Separated":{ |
| "p":0.0, |
| "r":0.0, |
| "f":0.0 |
| }, |
| "Anxiety: NA":{ |
| "p":0.6666666667, |
| "r":0.9333333333, |
| "f":0.7777777778 |
| }, |
| "Social_isolation: NA":{ |
| "p":0.0, |
| "r":0.0, |
| "f":0.0 |
| }, |
| "Anxiety: family hx: Anxiety state":{ |
| "p":1.0, |
| "r":1.0, |
| "f":1.0 |
| }, |
| "Depression: Family hx: Depression":{ |
| "p":0.875, |
| "r":0.7777777778, |
| "f":0.8235294118 |
| }, |
| "Marital_or_partnership_status: Widowed":{ |
| "p":0.7428571429, |
| "r":0.7222222222, |
| "f":0.7323943662 |
| }, |
| "Food: Provision of food":{ |
| "p":0.0, |
| "r":0.0, |
| "f":0.0 |
| }, |
| "Anxiety: Generalized Anxiety Disorder":{ |
| "p":0.2, |
| "r":0.25, |
| "f":0.2222222222 |
| }, |
| "Financial_strain: NA":{ |
| "p":0.0, |
| "r":0.0, |
| "f":0.0 |
| }, |
| "Insurance_status: Inadequate healthcare resources":{ |
| "p":0.0, |
| "r":0.0, |
| "f":0.0 |
| }, |
| "Insurance_status: NA":{ |
| "p":0.0, |
| "r":0.0, |
| "f":0.0 |
| }, |
| "Marital_or_partnership_status: NA":{ |
| "p":0.0, |
| "r":0.0, |
| "f":0.0 |
| }, |
| "Transportation: Has access to a car":{ |
| "p":0.5, |
| "r":0.2222222222, |
| "f":0.3076923077 |
| }, |
| "Anxiety: GAD-7":{ |
| "p":0.0, |
| "r":0.0, |
| "f":0.0 |
| }, |
| "Depression: PHQ-9":{ |
| "p":0.0, |
| "r":0.0, |
| "f":0.0 |
| }, |
| "Financial_strain: Financial problem":{ |
| "p":0.0, |
| "r":0.0, |
| "f":0.0 |
| }, |
| "Housing: Housing unsuited to needs":{ |
| "p":0.0, |
| "r":0.0, |
| "f":0.0 |
| }, |
| "Housing: Subsidized housing":{ |
| "p":0.0, |
| "r":0.0, |
| "f":0.0 |
| }, |
| "Social_isolation: At risk for loneliness":{ |
| "p":0.0, |
| "r":0.0, |
| "f":0.0 |
| }, |
| "Marital_or_partnership_status: Engaged to be married":{ |
| "p":1.0, |
| "r":0.5, |
| "f":0.6666666667 |
| }, |
| "Financial_strain: Unable to afford medication":{ |
| "p":0.0, |
| "r":0.0, |
| "f":0.0 |
| }, |
| "Transportation: Has access to public transport vehicle":{ |
| "p":0.0, |
| "r":0.0, |
| "f":0.0 |
| }, |
| "Housing: lives in facility":{ |
| "p":0.0, |
| "r":0.0, |
| "f":0.0 |
| }, |
| "Transportation: Transportation problems":{ |
| "p":1.0, |
| "r":1.0, |
| "f":1.0 |
| }, |
| "Social_isolation: Social Isolation":{ |
| "p":0.0, |
| "r":0.0, |
| "f":0.0 |
| }, |
| "Housing: NA":{ |
| "p":0.0, |
| "r":0.0, |
| "f":0.0 |
| } |
| }, |
| "transformer_loss":377081.381025166, |
| "ner_loss":14440.8680006622 |
| }, |
| "requirements":[ |
| "spacy-transformers>=1.1.4,<1.2.0" |
| ] |
| } |
