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Upload TextClassificationPipeline

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Files changed (2) hide show
  1. config.json +9 -778
  2. model.safetensors +2 -2
config.json CHANGED
@@ -1,5 +1,5 @@
1
  {
2
- "_name_or_path": "/groups/pupko/edodotan/PretrainAccelerator/validators/cell_location/models/results/facebook_esm2_t30_150M_UR50D_long/checkpoint-1200000/",
3
  "architectures": [
4
  "EsmForSequenceClassification"
5
  ],
@@ -11,787 +11,19 @@
11
  "hidden_dropout_prob": 0.0,
12
  "hidden_size": 640,
13
  "id2label": {
14
- "0": "a band",
15
- "1": "acidocalcisome membrane",
16
- "2": "acrosome",
17
- "3": "acrosome inner membrane",
18
- "4": "acrosome lumen",
19
- "5": "acrosome membrane",
20
- "6": "actin patch",
21
- "7": "adherens junction",
22
- "8": "aleurone grain",
23
- "9": "aleurone grain membrane",
24
- "10": "amyloplast",
25
- "11": "amyloplast membrane",
26
- "12": "anammoxosome",
27
- "13": "apical cell membrane",
28
- "14": "apicolateral cell membrane",
29
- "15": "apicoplast",
30
- "16": "apoplast",
31
- "17": "archaeal flagellum",
32
- "18": "ascus epiplasm",
33
- "19": "attachment organelle",
34
- "20": "attachment organelle membrane",
35
- "21": "autolysosome membrane",
36
- "22": "autophagosome",
37
- "23": "autophagosome membrane",
38
- "24": "axon",
39
- "25": "bacterial flagellum",
40
- "26": "bacterial flagellum basal body",
41
- "27": "bacterial microcompartment",
42
- "28": "basal cell membrane",
43
- "29": "basement membrane",
44
- "30": "basolateral cell membrane",
45
- "31": "bud",
46
- "32": "bud membrane",
47
- "33": "bud neck",
48
- "34": "bud tip",
49
- "35": "cajal body",
50
- "36": "calyx",
51
- "37": "capsule",
52
- "38": "carboxysome",
53
- "39": "caveola",
54
- "40": "cell cortex",
55
- "41": "cell envelope",
56
- "42": "cell inner membrane",
57
- "43": "cell junction",
58
- "44": "cell membrane",
59
- "45": "cell outer membrane",
60
- "46": "cell projection",
61
- "47": "cell septum",
62
- "48": "cell surface",
63
- "49": "cell tip",
64
- "50": "cellular chromatophore membrane",
65
- "51": "cellular thylakoid lumen",
66
- "52": "cellular thylakoid membrane",
67
- "53": "cell wall",
68
- "54": "centriolar satellite",
69
- "55": "centriole",
70
- "56": "centromere",
71
- "57": "centrosome",
72
- "58": "chloroplast",
73
- "59": "chloroplast envelope",
74
- "60": "chloroplast inner membrane",
75
- "61": "chloroplast intermembrane space",
76
- "62": "chloroplast membrane",
77
- "63": "chloroplast nucleoid",
78
- "64": "chloroplast outer membrane",
79
- "65": "chloroplast stroma",
80
- "66": "chloroplast thylakoid",
81
- "67": "chloroplast thylakoid lumen",
82
- "68": "chloroplast thylakoid membrane",
83
- "69": "chlorosome",
84
- "70": "chlorosome envelope",
85
- "71": "chromaffin granule",
86
- "72": "chromaffin granule lumen",
87
- "73": "chromaffin granule membrane",
88
- "74": "chromoplast",
89
- "75": "chromoplast stroma",
90
- "76": "chromosome",
91
- "77": "cilium",
92
- "78": "cilium axoneme",
93
- "79": "cilium basal body",
94
- "80": "cilium membrane",
95
- "81": "cis-golgi network",
96
- "82": "cis-golgi network membrane",
97
- "83": "clathrin-coated pit",
98
- "84": "clathrin-coated vesicle",
99
- "85": "clathrin-coated vesicle membrane",
100
- "86": "cleavage furrow",
101
- "87": "coated pit",
102
- "88": "contractile vacuole",
103
- "89": "contractile vacuole membrane",
104
- "90": "copi-coated vesicle",
105
- "91": "copi-coated vesicle membrane",
106
- "92": "copii-coated vesicle",
107
- "93": "copii-coated vesicle membrane",
108
- "94": "cortical granule",
109
- "95": "cvt vesicle membrane",
110
- "96": "cyanelle",
111
- "97": "cyanelle stroma",
112
- "98": "cyanelle thylakoid lumen",
113
- "99": "cyanelle thylakoid membrane",
114
- "100": "cytolytic granule",
115
- "101": "cytoplasm",
116
- "102": "cytoplasmic granule",
117
- "103": "cytoplasmic granule lumen",
118
- "104": "cytoplasmic granule membrane",
119
- "105": "cytoplasmic ribonucleoprotein granule",
120
- "106": "cytoplasmic vesicle",
121
- "107": "cytoplasmic vesicle lumen",
122
- "108": "cytoplasmic vesicle membrane",
123
- "109": "cytoskeleton",
124
- "110": "cytosol",
125
- "111": "dendrite",
126
- "112": "dendritic spine",
127
- "113": "dendritic spine membrane",
128
- "114": "desmosome",
129
- "115": "dynein axonemal particle",
130
- "116": "early endosome",
131
- "117": "early endosome membrane",
132
- "118": "encapsulin nanocompartment",
133
- "119": "endomembrane system",
134
- "120": "endoplasmic reticulum",
135
- "121": "endoplasmic reticulum-golgi intermediate compartment",
136
- "122": "endoplasmic reticulum-golgi intermediate compartment membrane",
137
- "123": "endoplasmic reticulum lumen",
138
- "124": "endoplasmic reticulum membrane",
139
- "125": "endosome",
140
- "126": "endosome membrane",
141
- "127": "etioplast membrane",
142
- "128": "extracellular exosome",
143
- "129": "extracellular matrix",
144
- "130": "extracellular space",
145
- "131": "extracellular vesicle",
146
- "132": "extracellular vesicle membrane",
147
- "133": "filopodium",
148
- "134": "filopodium membrane",
149
- "135": "fimbrium",
150
- "136": "flagellar pocket",
151
- "137": "flagellum",
152
- "138": "flagellum axoneme",
153
- "139": "flagellum basal body",
154
- "140": "flagellum membrane",
155
- "141": "focal adhesion",
156
- "142": "forespore",
157
- "143": "forespore inner membrane",
158
- "144": "forespore intermembrane space",
159
- "145": "forespore membrane",
160
- "146": "forespore outer membrane",
161
- "147": "gap junction",
162
- "148": "gas vesicle",
163
- "149": "gas vesicle shell",
164
- "150": "gem",
165
- "151": "glycosome",
166
- "152": "glyoxysome",
167
- "153": "glyoxysome membrane",
168
- "154": "golgi apparatus",
169
- "155": "golgi apparatus lumen",
170
- "156": "golgi apparatus membrane",
171
- "157": "golgi outpost",
172
- "158": "golgi stack",
173
- "159": "golgi stack membrane",
174
- "160": "growth cone",
175
- "161": "hemidesmosome",
176
- "162": "host cell inner membrane",
177
- "163": "host cell junction",
178
- "164": "host cell membrane",
179
- "165": "host cell outer membrane",
180
- "166": "host cell surface",
181
- "167": "host cellular thylakoid membrane",
182
- "168": "host cell wall",
183
- "169": "host chloroplast envelope",
184
- "170": "host cytoplasm",
185
- "171": "host cytoplasmic vesicle",
186
- "172": "host cytoplasmic vesicle membrane",
187
- "173": "host cytoskeleton",
188
- "174": "host cytosol",
189
- "175": "host endoplasmic reticulum",
190
- "176": "host endoplasmic reticulum-golgi intermediate compartment",
191
- "177": "host endoplasmic reticulum lumen",
192
- "178": "host endoplasmic reticulum membrane",
193
- "179": "host endosome",
194
- "180": "host golgi apparatus",
195
- "181": "host golgi apparatus membrane",
196
- "182": "host membrane",
197
- "183": "host mitochondrion",
198
- "184": "host mitochondrion inner membrane",
199
- "185": "host mitochondrion membrane",
200
- "186": "host mitochondrion outer membrane",
201
- "187": "host multivesicular body",
202
- "188": "host nucleolus",
203
- "189": "host nucleoplasm",
204
- "190": "host nucleus",
205
- "191": "host nucleus envelope",
206
- "192": "host nucleus inner membrane",
207
- "193": "host nucleus matrix",
208
- "194": "host nucleus membrane",
209
- "195": "host perinuclear region",
210
- "196": "host periplasm",
211
- "197": "host plasmodesma",
212
- "198": "host rough endoplasmic reticulum",
213
- "199": "host rough endoplasmic reticulum membrane",
214
- "200": "hydrogenosome",
215
- "201": "hydrogenosome lumen",
216
- "202": "i band",
217
- "203": "inflammasome",
218
- "204": "inner membrane complex",
219
- "205": "interphotoreceptor matrix",
220
- "206": "invadopodium membrane",
221
- "207": "kinetochore",
222
- "208": "kinetoplast",
223
- "209": "lamellipodium",
224
- "210": "lamellipodium membrane",
225
- "211": "late endosome",
226
- "212": "late endosome lumen",
227
- "213": "late endosome membrane",
228
- "214": "lateral cell membrane",
229
- "215": "lipid droplet",
230
- "216": "lysosome",
231
- "217": "lysosome lumen",
232
- "218": "lysosome membrane",
233
- "219": "lytic vacuole",
234
- "220": "magnetosome",
235
- "221": "magnetosome membrane",
236
- "222": "melanosome",
237
- "223": "melanosome lumen",
238
- "224": "melanosome membrane",
239
- "225": "membrane",
240
- "226": "membrane raft",
241
- "227": "microneme",
242
- "228": "microneme membrane",
243
- "229": "microsome",
244
- "230": "microsome membrane",
245
- "231": "microtubule organizing center",
246
- "232": "microvillus",
247
- "233": "microvillus membrane",
248
- "234": "midbody",
249
- "235": "midbody ring",
250
- "236": "mitochondrion",
251
- "237": "mitochondrion envelope",
252
- "238": "mitochondrion inner membrane",
253
- "239": "mitochondrion intermembrane space",
254
- "240": "mitochondrion matrix",
255
- "241": "mitochondrion membrane",
256
- "242": "mitochondrion nucleoid",
257
- "243": "mitochondrion outer membrane",
258
- "244": "mitosome",
259
- "245": "mitosome matrix",
260
- "246": "mitosome membrane",
261
- "247": "m line",
262
- "248": "multivesicular body",
263
- "249": "multivesicular body membrane",
264
- "250": "myelin membrane",
265
- "251": "myofibril",
266
- "252": "nematocyst",
267
- "253": "neuronal dense core vesicle membrane",
268
- "254": "neuron projection",
269
- "255": "nuclear body",
270
- "256": "nuclear pore complex",
271
- "257": "nucleoid",
272
- "258": "nucleolus",
273
- "259": "nucleoplasm",
274
- "260": "nucleus",
275
- "261": "nucleus envelope",
276
- "262": "nucleus inner membrane",
277
- "263": "nucleus lamina",
278
- "264": "nucleus matrix",
279
- "265": "nucleus membrane",
280
- "266": "nucleus outer membrane",
281
- "267": "nucleus speckle",
282
- "268": "organellar chromatophore",
283
- "269": "organellar chromatophore thylakoid membrane",
284
- "270": "parasitophorous vacuole",
285
- "271": "parasitophorous vacuole lumen",
286
- "272": "parasitophorous vacuole membrane",
287
- "273": "p-body",
288
- "274": "peribacteroid membrane",
289
- "275": "peribacteroid space",
290
- "276": "perikaryon",
291
- "277": "perinuclear region",
292
- "278": "perinuclear theca",
293
- "279": "periplasm",
294
- "280": "periplasmic flagellum",
295
- "281": "perispore",
296
- "282": "peroxisome",
297
- "283": "peroxisome matrix",
298
- "284": "peroxisome membrane",
299
- "285": "phagocytic cup",
300
- "286": "phagosome",
301
- "287": "phagosome membrane",
302
- "288": "photoreceptor inner segment",
303
- "289": "photoreceptor inner segment membrane",
304
- "290": "photoreceptor outer segment",
305
- "291": "photoreceptor outer segment membrane",
306
- "292": "phragmoplast",
307
- "293": "plasmodesma",
308
- "294": "plastid",
309
- "295": "plastid inner membrane",
310
- "296": "plastid membrane",
311
- "297": "plastid outer membrane",
312
- "298": "plastid stroma",
313
- "299": "plastid thylakoid membrane",
314
- "300": "plastoglobule",
315
- "301": "pml body",
316
- "302": "podosome",
317
- "303": "pollen coat",
318
- "304": "postsynapse",
319
- "305": "postsynaptic cell membrane",
320
- "306": "postsynaptic density",
321
- "307": "postsynaptic density membrane",
322
- "308": "postsynaptic recycling endosome membrane",
323
- "309": "preautophagosomal structure",
324
- "310": "preautophagosomal structure membrane",
325
- "311": "presynapse",
326
- "312": "presynaptic active zone",
327
- "313": "presynaptic cell membrane",
328
- "314": "prevacuolar compartment",
329
- "315": "prevacuolar compartment membrane",
330
- "316": "primary cell wall",
331
- "317": "prospore",
332
- "318": "prospore membrane",
333
- "319": "protein storage vacuole",
334
- "320": "protein storage vacuole lumen",
335
- "321": "protein storage vacuole membrane",
336
- "322": "pseudopodium",
337
- "323": "recycling endosome",
338
- "324": "recycling endosome membrane",
339
- "325": "rhoptry membrane",
340
- "326": "rough endoplasmic reticulum",
341
- "327": "rough endoplasmic reticulum lumen",
342
- "328": "rough endoplasmic reticulum membrane",
343
- "329": "ruffle",
344
- "330": "ruffle membrane",
345
- "331": "sarcolemma",
346
- "332": "sarcomere",
347
- "333": "sarcoplasmic reticulum",
348
- "334": "sarcoplasmic reticulum lumen",
349
- "335": "sarcoplasmic reticulum membrane",
350
- "336": "secreted",
351
- "337": "secretory vesicle",
352
- "338": "secretory vesicle lumen",
353
- "339": "secretory vesicle membrane",
354
- "340": "septate junction",
355
- "341": "s-layer",
356
- "342": "smooth endoplasmic reticulum membrane",
357
- "343": "spindle",
358
- "344": "spindle pole",
359
- "345": "spindle pole body",
360
- "346": "spore",
361
- "347": "spore coat",
362
- "348": "spore core",
363
- "349": "spore cortex",
364
- "350": "spore membrane",
365
- "351": "spore outer membrane",
366
- "352": "spore polar tube",
367
- "353": "spore wall",
368
- "354": "stereocilium",
369
- "355": "stereocilium membrane",
370
- "356": "stress fiber",
371
- "357": "stress granule",
372
- "358": "surface film",
373
- "359": "symbiosome",
374
- "360": "synapse",
375
- "361": "synaptic cell membrane",
376
- "362": "synaptic cleft",
377
- "363": "synaptic vesicle",
378
- "364": "synaptic vesicle membrane",
379
- "365": "synaptosome",
380
- "366": "target cell",
381
- "367": "target cell cytoplasm",
382
- "368": "target cell membrane",
383
- "369": "tegument membrane",
384
- "370": "telomere",
385
- "371": "thylakoid",
386
- "372": "tight junction",
387
- "373": "trans-golgi network",
388
- "374": "trans-golgi network membrane",
389
- "375": "trichocyst",
390
- "376": "t-tubule",
391
- "377": "vacuole",
392
- "378": "vacuole lumen",
393
- "379": "vacuole membrane",
394
- "380": "vesicle",
395
- "381": "virion",
396
- "382": "virion membrane",
397
- "383": "virion tegument",
398
- "384": "z line",
399
- "385": "zona pellucida",
400
- "386": "zymogen granule",
401
- "387": "zymogen granule membrane"
402
  },
403
  "initializer_range": 0.02,
404
  "intermediate_size": 2560,
405
  "is_folding_model": false,
406
  "label2id": {
407
- "a band": 0,
408
- "acidocalcisome membrane": 1,
409
- "acrosome": 2,
410
- "acrosome inner membrane": 3,
411
- "acrosome lumen": 4,
412
- "acrosome membrane": 5,
413
- "actin patch": 6,
414
- "adherens junction": 7,
415
- "aleurone grain": 8,
416
- "aleurone grain membrane": 9,
417
- "amyloplast": 10,
418
- "amyloplast membrane": 11,
419
- "anammoxosome": 12,
420
- "apical cell membrane": 13,
421
- "apicolateral cell membrane": 14,
422
- "apicoplast": 15,
423
- "apoplast": 16,
424
- "archaeal flagellum": 17,
425
- "ascus epiplasm": 18,
426
- "attachment organelle": 19,
427
- "attachment organelle membrane": 20,
428
- "autolysosome membrane": 21,
429
- "autophagosome": 22,
430
- "autophagosome membrane": 23,
431
- "axon": 24,
432
- "bacterial flagellum": 25,
433
- "bacterial flagellum basal body": 26,
434
- "bacterial microcompartment": 27,
435
- "basal cell membrane": 28,
436
- "basement membrane": 29,
437
- "basolateral cell membrane": 30,
438
- "bud": 31,
439
- "bud membrane": 32,
440
- "bud neck": 33,
441
- "bud tip": 34,
442
- "cajal body": 35,
443
- "calyx": 36,
444
- "capsule": 37,
445
- "carboxysome": 38,
446
- "caveola": 39,
447
- "cell cortex": 40,
448
- "cell envelope": 41,
449
- "cell inner membrane": 42,
450
- "cell junction": 43,
451
- "cell membrane": 44,
452
- "cell outer membrane": 45,
453
- "cell projection": 46,
454
- "cell septum": 47,
455
- "cell surface": 48,
456
- "cell tip": 49,
457
- "cell wall": 53,
458
- "cellular chromatophore membrane": 50,
459
- "cellular thylakoid lumen": 51,
460
- "cellular thylakoid membrane": 52,
461
- "centriolar satellite": 54,
462
- "centriole": 55,
463
- "centromere": 56,
464
- "centrosome": 57,
465
- "chloroplast": 58,
466
- "chloroplast envelope": 59,
467
- "chloroplast inner membrane": 60,
468
- "chloroplast intermembrane space": 61,
469
- "chloroplast membrane": 62,
470
- "chloroplast nucleoid": 63,
471
- "chloroplast outer membrane": 64,
472
- "chloroplast stroma": 65,
473
- "chloroplast thylakoid": 66,
474
- "chloroplast thylakoid lumen": 67,
475
- "chloroplast thylakoid membrane": 68,
476
- "chlorosome": 69,
477
- "chlorosome envelope": 70,
478
- "chromaffin granule": 71,
479
- "chromaffin granule lumen": 72,
480
- "chromaffin granule membrane": 73,
481
- "chromoplast": 74,
482
- "chromoplast stroma": 75,
483
- "chromosome": 76,
484
- "cilium": 77,
485
- "cilium axoneme": 78,
486
- "cilium basal body": 79,
487
- "cilium membrane": 80,
488
- "cis-golgi network": 81,
489
- "cis-golgi network membrane": 82,
490
- "clathrin-coated pit": 83,
491
- "clathrin-coated vesicle": 84,
492
- "clathrin-coated vesicle membrane": 85,
493
- "cleavage furrow": 86,
494
- "coated pit": 87,
495
- "contractile vacuole": 88,
496
- "contractile vacuole membrane": 89,
497
- "copi-coated vesicle": 90,
498
- "copi-coated vesicle membrane": 91,
499
- "copii-coated vesicle": 92,
500
- "copii-coated vesicle membrane": 93,
501
- "cortical granule": 94,
502
- "cvt vesicle membrane": 95,
503
- "cyanelle": 96,
504
- "cyanelle stroma": 97,
505
- "cyanelle thylakoid lumen": 98,
506
- "cyanelle thylakoid membrane": 99,
507
- "cytolytic granule": 100,
508
- "cytoplasm": 101,
509
- "cytoplasmic granule": 102,
510
- "cytoplasmic granule lumen": 103,
511
- "cytoplasmic granule membrane": 104,
512
- "cytoplasmic ribonucleoprotein granule": 105,
513
- "cytoplasmic vesicle": 106,
514
- "cytoplasmic vesicle lumen": 107,
515
- "cytoplasmic vesicle membrane": 108,
516
- "cytoskeleton": 109,
517
- "cytosol": 110,
518
- "dendrite": 111,
519
- "dendritic spine": 112,
520
- "dendritic spine membrane": 113,
521
- "desmosome": 114,
522
- "dynein axonemal particle": 115,
523
- "early endosome": 116,
524
- "early endosome membrane": 117,
525
- "encapsulin nanocompartment": 118,
526
- "endomembrane system": 119,
527
- "endoplasmic reticulum": 120,
528
- "endoplasmic reticulum lumen": 123,
529
- "endoplasmic reticulum membrane": 124,
530
- "endoplasmic reticulum-golgi intermediate compartment": 121,
531
- "endoplasmic reticulum-golgi intermediate compartment membrane": 122,
532
- "endosome": 125,
533
- "endosome membrane": 126,
534
- "etioplast membrane": 127,
535
- "extracellular exosome": 128,
536
- "extracellular matrix": 129,
537
- "extracellular space": 130,
538
- "extracellular vesicle": 131,
539
- "extracellular vesicle membrane": 132,
540
- "filopodium": 133,
541
- "filopodium membrane": 134,
542
- "fimbrium": 135,
543
- "flagellar pocket": 136,
544
- "flagellum": 137,
545
- "flagellum axoneme": 138,
546
- "flagellum basal body": 139,
547
- "flagellum membrane": 140,
548
- "focal adhesion": 141,
549
- "forespore": 142,
550
- "forespore inner membrane": 143,
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