| """Functions for generating line graphs.""" |
|
|
| from collections import defaultdict |
| from functools import partial |
| from itertools import combinations |
|
|
| import networkx as nx |
| from networkx.utils import arbitrary_element |
| from networkx.utils.decorators import not_implemented_for |
|
|
| __all__ = ["line_graph", "inverse_line_graph"] |
|
|
|
|
| @nx._dispatchable(returns_graph=True) |
| def line_graph(G, create_using=None): |
| r"""Returns the line graph of the graph or digraph `G`. |
| |
| The line graph of a graph `G` has a node for each edge in `G` and an |
| edge joining those nodes if the two edges in `G` share a common node. For |
| directed graphs, nodes are adjacent exactly when the edges they represent |
| form a directed path of length two. |
| |
| The nodes of the line graph are 2-tuples of nodes in the original graph (or |
| 3-tuples for multigraphs, with the key of the edge as the third element). |
| |
| For information about self-loops and more discussion, see the **Notes** |
| section below. |
| |
| Parameters |
| ---------- |
| G : graph |
| A NetworkX Graph, DiGraph, MultiGraph, or MultiDigraph. |
| create_using : NetworkX graph constructor, optional (default=nx.Graph) |
| Graph type to create. If graph instance, then cleared before populated. |
| |
| Returns |
| ------- |
| L : graph |
| The line graph of G. |
| |
| Examples |
| -------- |
| >>> G = nx.star_graph(3) |
| >>> L = nx.line_graph(G) |
| >>> print(sorted(map(sorted, L.edges()))) # makes a 3-clique, K3 |
| [[(0, 1), (0, 2)], [(0, 1), (0, 3)], [(0, 2), (0, 3)]] |
| |
| Edge attributes from `G` are not copied over as node attributes in `L`, but |
| attributes can be copied manually: |
| |
| >>> G = nx.path_graph(4) |
| >>> G.add_edges_from((u, v, {"tot": u + v}) for u, v in G.edges) |
| >>> G.edges(data=True) |
| EdgeDataView([(0, 1, {'tot': 1}), (1, 2, {'tot': 3}), (2, 3, {'tot': 5})]) |
| >>> H = nx.line_graph(G) |
| >>> H.add_nodes_from((node, G.edges[node]) for node in H) |
| >>> H.nodes(data=True) |
| NodeDataView({(0, 1): {'tot': 1}, (2, 3): {'tot': 5}, (1, 2): {'tot': 3}}) |
| |
| Notes |
| ----- |
| Graph, node, and edge data are not propagated to the new graph. For |
| undirected graphs, the nodes in G must be sortable, otherwise the |
| constructed line graph may not be correct. |
| |
| *Self-loops in undirected graphs* |
| |
| For an undirected graph `G` without multiple edges, each edge can be |
| written as a set `\{u, v\}`. Its line graph `L` has the edges of `G` as |
| its nodes. If `x` and `y` are two nodes in `L`, then `\{x, y\}` is an edge |
| in `L` if and only if the intersection of `x` and `y` is nonempty. Thus, |
| the set of all edges is determined by the set of all pairwise intersections |
| of edges in `G`. |
| |
| Trivially, every edge in G would have a nonzero intersection with itself, |
| and so every node in `L` should have a self-loop. This is not so |
| interesting, and the original context of line graphs was with simple |
| graphs, which had no self-loops or multiple edges. The line graph was also |
| meant to be a simple graph and thus, self-loops in `L` are not part of the |
| standard definition of a line graph. In a pairwise intersection matrix, |
| this is analogous to excluding the diagonal entries from the line graph |
| definition. |
| |
| Self-loops and multiple edges in `G` add nodes to `L` in a natural way, and |
| do not require any fundamental changes to the definition. It might be |
| argued that the self-loops we excluded before should now be included. |
| However, the self-loops are still "trivial" in some sense and thus, are |
| usually excluded. |
| |
| *Self-loops in directed graphs* |
| |
| For a directed graph `G` without multiple edges, each edge can be written |
| as a tuple `(u, v)`. Its line graph `L` has the edges of `G` as its |
| nodes. If `x` and `y` are two nodes in `L`, then `(x, y)` is an edge in `L` |
| if and only if the tail of `x` matches the head of `y`, for example, if `x |
| = (a, b)` and `y = (b, c)` for some vertices `a`, `b`, and `c` in `G`. |
| |
| Due to the directed nature of the edges, it is no longer the case that |
| every edge in `G` should have a self-loop in `L`. Now, the only time |
| self-loops arise is if a node in `G` itself has a self-loop. So such |
| self-loops are no longer "trivial" but instead, represent essential |
| features of the topology of `G`. For this reason, the historical |
| development of line digraphs is such that self-loops are included. When the |
| graph `G` has multiple edges, once again only superficial changes are |
| required to the definition. |
| |
| References |
| ---------- |
| * Harary, Frank, and Norman, Robert Z., "Some properties of line digraphs", |
| Rend. Circ. Mat. Palermo, II. Ser. 9 (1960), 161--168. |
| * Hemminger, R. L.; Beineke, L. W. (1978), "Line graphs and line digraphs", |
| in Beineke, L. W.; Wilson, R. J., Selected Topics in Graph Theory, |
| Academic Press Inc., pp. 271--305. |
| |
| """ |
| if G.is_directed(): |
| L = _lg_directed(G, create_using=create_using) |
| else: |
| L = _lg_undirected(G, selfloops=False, create_using=create_using) |
| return L |
|
|
|
|
| def _lg_directed(G, create_using=None): |
| """Returns the line graph L of the (multi)digraph G. |
| |
| Edges in G appear as nodes in L, represented as tuples of the form (u,v) |
| or (u,v,key) if G is a multidigraph. A node in L corresponding to the edge |
| (u,v) is connected to every node corresponding to an edge (v,w). |
| |
| Parameters |
| ---------- |
| G : digraph |
| A directed graph or directed multigraph. |
| create_using : NetworkX graph constructor, optional |
| Graph type to create. If graph instance, then cleared before populated. |
| Default is to use the same graph class as `G`. |
| |
| """ |
| L = nx.empty_graph(0, create_using, default=G.__class__) |
|
|
| |
| get_edges = partial(G.edges, keys=True) if G.is_multigraph() else G.edges |
|
|
| for from_node in get_edges(): |
| |
| L.add_node(from_node) |
| for to_node in get_edges(from_node[1]): |
| L.add_edge(from_node, to_node) |
|
|
| return L |
|
|
|
|
| def _lg_undirected(G, selfloops=False, create_using=None): |
| """Returns the line graph L of the (multi)graph G. |
| |
| Edges in G appear as nodes in L, represented as sorted tuples of the form |
| (u,v), or (u,v,key) if G is a multigraph. A node in L corresponding to |
| the edge {u,v} is connected to every node corresponding to an edge that |
| involves u or v. |
| |
| Parameters |
| ---------- |
| G : graph |
| An undirected graph or multigraph. |
| selfloops : bool |
| If `True`, then self-loops are included in the line graph. If `False`, |
| they are excluded. |
| create_using : NetworkX graph constructor, optional (default=nx.Graph) |
| Graph type to create. If graph instance, then cleared before populated. |
| |
| Notes |
| ----- |
| The standard algorithm for line graphs of undirected graphs does not |
| produce self-loops. |
| |
| """ |
| L = nx.empty_graph(0, create_using, default=G.__class__) |
|
|
| |
| get_edges = partial(G.edges, keys=True) if G.is_multigraph() else G.edges |
|
|
| |
| shift = 0 if selfloops else 1 |
|
|
| |
| node_index = {n: i for i, n in enumerate(G)} |
|
|
| |
| edge_key_function = lambda edge: (node_index[edge[0]], node_index[edge[1]]) |
|
|
| edges = set() |
| for u in G: |
| |
| |
| |
| nodes = [tuple(sorted(x[:2], key=node_index.get)) + x[2:] for x in get_edges(u)] |
|
|
| if len(nodes) == 1: |
| |
| L.add_node(nodes[0]) |
|
|
| |
| |
| |
| for i, a in enumerate(nodes): |
| edges.update( |
| [ |
| tuple(sorted((a, b), key=edge_key_function)) |
| for b in nodes[i + shift :] |
| ] |
| ) |
|
|
| L.add_edges_from(edges) |
| return L |
|
|
|
|
| @not_implemented_for("directed") |
| @not_implemented_for("multigraph") |
| @nx._dispatchable(returns_graph=True) |
| def inverse_line_graph(G): |
| """Returns the inverse line graph of graph G. |
| |
| If H is a graph, and G is the line graph of H, such that G = L(H). |
| Then H is the inverse line graph of G. |
| |
| Not all graphs are line graphs and these do not have an inverse line graph. |
| In these cases this function raises a NetworkXError. |
| |
| Parameters |
| ---------- |
| G : graph |
| A NetworkX Graph |
| |
| Returns |
| ------- |
| H : graph |
| The inverse line graph of G. |
| |
| Raises |
| ------ |
| NetworkXNotImplemented |
| If G is directed or a multigraph |
| |
| NetworkXError |
| If G is not a line graph |
| |
| Notes |
| ----- |
| This is an implementation of the Roussopoulos algorithm[1]_. |
| |
| If G consists of multiple components, then the algorithm doesn't work. |
| You should invert every component separately: |
| |
| >>> K5 = nx.complete_graph(5) |
| >>> P4 = nx.Graph([("a", "b"), ("b", "c"), ("c", "d")]) |
| >>> G = nx.union(K5, P4) |
| >>> root_graphs = [] |
| >>> for comp in nx.connected_components(G): |
| ... root_graphs.append(nx.inverse_line_graph(G.subgraph(comp))) |
| >>> len(root_graphs) |
| 2 |
| |
| References |
| ---------- |
| .. [1] Roussopoulos, N.D. , "A max {m, n} algorithm for determining the graph H from |
| its line graph G", Information Processing Letters 2, (1973), 108--112, ISSN 0020-0190, |
| `DOI link <https://doi.org/10.1016/0020-0190(73)90029-X>`_ |
| |
| """ |
| if G.number_of_nodes() == 0: |
| return nx.empty_graph(1) |
| elif G.number_of_nodes() == 1: |
| v = arbitrary_element(G) |
| a = (v, 0) |
| b = (v, 1) |
| H = nx.Graph([(a, b)]) |
| return H |
| elif G.number_of_nodes() > 1 and G.number_of_edges() == 0: |
| msg = ( |
| "inverse_line_graph() doesn't work on an edgeless graph. " |
| "Please use this function on each component separately." |
| ) |
| raise nx.NetworkXError(msg) |
|
|
| if nx.number_of_selfloops(G) != 0: |
| msg = ( |
| "A line graph as generated by NetworkX has no selfloops, so G has no " |
| "inverse line graph. Please remove the selfloops from G and try again." |
| ) |
| raise nx.NetworkXError(msg) |
|
|
| starting_cell = _select_starting_cell(G) |
| P = _find_partition(G, starting_cell) |
| |
| P_count = {u: 0 for u in G.nodes} |
| for p in P: |
| for u in p: |
| P_count[u] += 1 |
|
|
| if max(P_count.values()) > 2: |
| msg = "G is not a line graph (vertex found in more than two partition cells)" |
| raise nx.NetworkXError(msg) |
| W = tuple((u,) for u in P_count if P_count[u] == 1) |
| H = nx.Graph() |
| H.add_nodes_from(P) |
| H.add_nodes_from(W) |
| for a, b in combinations(H.nodes, 2): |
| if any(a_bit in b for a_bit in a): |
| H.add_edge(a, b) |
| return H |
|
|
|
|
| def _triangles(G, e): |
| """Return list of all triangles containing edge e""" |
| u, v = e |
| if u not in G: |
| raise nx.NetworkXError(f"Vertex {u} not in graph") |
| if v not in G[u]: |
| raise nx.NetworkXError(f"Edge ({u}, {v}) not in graph") |
| triangle_list = [] |
| for x in G[u]: |
| if x in G[v]: |
| triangle_list.append((u, v, x)) |
| return triangle_list |
|
|
|
|
| def _odd_triangle(G, T): |
| """Test whether T is an odd triangle in G |
| |
| Parameters |
| ---------- |
| G : NetworkX Graph |
| T : 3-tuple of vertices forming triangle in G |
| |
| Returns |
| ------- |
| True is T is an odd triangle |
| False otherwise |
| |
| Raises |
| ------ |
| NetworkXError |
| T is not a triangle in G |
| |
| Notes |
| ----- |
| An odd triangle is one in which there exists another vertex in G which is |
| adjacent to either exactly one or exactly all three of the vertices in the |
| triangle. |
| |
| """ |
| for u in T: |
| if u not in G.nodes(): |
| raise nx.NetworkXError(f"Vertex {u} not in graph") |
| for e in list(combinations(T, 2)): |
| if e[0] not in G[e[1]]: |
| raise nx.NetworkXError(f"Edge ({e[0]}, {e[1]}) not in graph") |
|
|
| T_nbrs = defaultdict(int) |
| for t in T: |
| for v in G[t]: |
| if v not in T: |
| T_nbrs[v] += 1 |
| return any(T_nbrs[v] in [1, 3] for v in T_nbrs) |
|
|
|
|
| def _find_partition(G, starting_cell): |
| """Find a partition of the vertices of G into cells of complete graphs |
| |
| Parameters |
| ---------- |
| G : NetworkX Graph |
| starting_cell : tuple of vertices in G which form a cell |
| |
| Returns |
| ------- |
| List of tuples of vertices of G |
| |
| Raises |
| ------ |
| NetworkXError |
| If a cell is not a complete subgraph then G is not a line graph |
| """ |
| G_partition = G.copy() |
| P = [starting_cell] |
| G_partition.remove_edges_from(list(combinations(starting_cell, 2))) |
| |
| partitioned_vertices = list(starting_cell) |
| while G_partition.number_of_edges() > 0: |
| |
| u = partitioned_vertices.pop() |
| deg_u = len(G_partition[u]) |
| if deg_u != 0: |
| |
| |
| |
| new_cell = [u] + list(G_partition[u]) |
| for u in new_cell: |
| for v in new_cell: |
| if (u != v) and (v not in G_partition[u]): |
| msg = ( |
| "G is not a line graph " |
| "(partition cell not a complete subgraph)" |
| ) |
| raise nx.NetworkXError(msg) |
| P.append(tuple(new_cell)) |
| G_partition.remove_edges_from(list(combinations(new_cell, 2))) |
| partitioned_vertices += new_cell |
| return P |
|
|
|
|
| def _select_starting_cell(G, starting_edge=None): |
| """Select a cell to initiate _find_partition |
| |
| Parameters |
| ---------- |
| G : NetworkX Graph |
| starting_edge: an edge to build the starting cell from |
| |
| Returns |
| ------- |
| Tuple of vertices in G |
| |
| Raises |
| ------ |
| NetworkXError |
| If it is determined that G is not a line graph |
| |
| Notes |
| ----- |
| If starting edge not specified then pick an arbitrary edge - doesn't |
| matter which. However, this function may call itself requiring a |
| specific starting edge. Note that the r, s notation for counting |
| triangles is the same as in the Roussopoulos paper cited above. |
| """ |
| if starting_edge is None: |
| e = arbitrary_element(G.edges()) |
| else: |
| e = starting_edge |
| if e[0] not in G.nodes(): |
| raise nx.NetworkXError(f"Vertex {e[0]} not in graph") |
| if e[1] not in G[e[0]]: |
| msg = f"starting_edge ({e[0]}, {e[1]}) is not in the Graph" |
| raise nx.NetworkXError(msg) |
| e_triangles = _triangles(G, e) |
| r = len(e_triangles) |
| if r == 0: |
| |
| starting_cell = e |
| elif r == 1: |
| |
| |
| T = e_triangles[0] |
| a, b, c = T |
| |
| ac_edges = len(_triangles(G, (a, c))) |
| bc_edges = len(_triangles(G, (b, c))) |
| if ac_edges == 1: |
| if bc_edges == 1: |
| starting_cell = T |
| else: |
| return _select_starting_cell(G, starting_edge=(b, c)) |
| else: |
| return _select_starting_cell(G, starting_edge=(a, c)) |
| else: |
| |
| s = 0 |
| odd_triangles = [] |
| for T in e_triangles: |
| if _odd_triangle(G, T): |
| s += 1 |
| odd_triangles.append(T) |
| if r == 2 and s == 0: |
| |
| starting_cell = T |
| elif r - 1 <= s <= r: |
| |
| triangle_nodes = set() |
| for T in odd_triangles: |
| for x in T: |
| triangle_nodes.add(x) |
|
|
| for u in triangle_nodes: |
| for v in triangle_nodes: |
| if u != v and (v not in G[u]): |
| msg = ( |
| "G is not a line graph (odd triangles " |
| "do not form complete subgraph)" |
| ) |
| raise nx.NetworkXError(msg) |
| |
| starting_cell = tuple(triangle_nodes) |
|
|
| else: |
| msg = ( |
| "G is not a line graph (incorrect number of " |
| "odd triangles around starting edge)" |
| ) |
| raise nx.NetworkXError(msg) |
| return starting_cell |
|
|