Upload model files
Browse files- config.json +191 -0
- optimizer.pt +3 -0
- pytorch_model.bin +3 -0
- rng_state.pth +3 -0
- scheduler.pt +3 -0
- special_tokens_map.json +7 -0
- tokenizer.json +0 -0
- tokenizer_config.json +16 -0
- trainer_state.json +912 -0
- training_args.bin +3 -0
- vocab.txt +0 -0
config.json
ADDED
|
@@ -0,0 +1,191 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"_name_or_path": "dmis-lab/biobert-base-cased-v1.1",
|
| 3 |
+
"architectures": [
|
| 4 |
+
"BertForSpanClassification"
|
| 5 |
+
],
|
| 6 |
+
"attention_probs_dropout_prob": 0.1,
|
| 7 |
+
"classifier_dropout": null,
|
| 8 |
+
"hidden_act": "gelu",
|
| 9 |
+
"hidden_dropout_prob": 0.1,
|
| 10 |
+
"hidden_size": 768,
|
| 11 |
+
"id2label": {
|
| 12 |
+
"0": "O",
|
| 13 |
+
"1": "B-AminoAcidPeptideOrProtein",
|
| 14 |
+
"2": "I-AminoAcidPeptideOrProtein",
|
| 15 |
+
"3": "B-AnatomicalAbnormality",
|
| 16 |
+
"4": "I-AnatomicalAbnormality",
|
| 17 |
+
"5": "B-Bacterium",
|
| 18 |
+
"6": "I-Bacterium",
|
| 19 |
+
"7": "B-BiologicFunction",
|
| 20 |
+
"8": "I-BiologicFunction",
|
| 21 |
+
"9": "B-BiologicallyActiveSubstance",
|
| 22 |
+
"10": "I-BiologicallyActiveSubstance",
|
| 23 |
+
"11": "B-BiomedicalOccupationOrDiscipline",
|
| 24 |
+
"12": "I-BiomedicalOccupationOrDiscipline",
|
| 25 |
+
"13": "B-BodyPartOrganOrOrganComponent",
|
| 26 |
+
"14": "I-BodyPartOrganOrOrganComponent",
|
| 27 |
+
"15": "B-Cell",
|
| 28 |
+
"16": "I-Cell",
|
| 29 |
+
"17": "B-CellComponent",
|
| 30 |
+
"18": "I-CellComponent",
|
| 31 |
+
"19": "B-CellFunction",
|
| 32 |
+
"20": "I-CellFunction",
|
| 33 |
+
"21": "B-CellOrMolecularDysfunction",
|
| 34 |
+
"22": "I-CellOrMolecularDysfunction",
|
| 35 |
+
"23": "B-Chemical",
|
| 36 |
+
"24": "I-Chemical",
|
| 37 |
+
"25": "B-ClinicalAttribute",
|
| 38 |
+
"26": "I-ClinicalAttribute",
|
| 39 |
+
"27": "B-DiseaseOrSyndrome",
|
| 40 |
+
"28": "I-DiseaseOrSyndrome",
|
| 41 |
+
"29": "B-EmbryonicStructure",
|
| 42 |
+
"30": "I-EmbryonicStructure",
|
| 43 |
+
"31": "B-EnvironmentalEffectOfHumans",
|
| 44 |
+
"32": "I-EnvironmentalEffectOfHumans",
|
| 45 |
+
"33": "B-Eukaryote",
|
| 46 |
+
"34": "I-Eukaryote",
|
| 47 |
+
"35": "B-ExperimentalModelOfDisease",
|
| 48 |
+
"36": "I-ExperimentalModelOfDisease",
|
| 49 |
+
"37": "B-Finding",
|
| 50 |
+
"38": "I-Finding",
|
| 51 |
+
"39": "B-GeneOrGenome",
|
| 52 |
+
"40": "I-GeneOrGenome",
|
| 53 |
+
"41": "B-HealthCareActivity",
|
| 54 |
+
"42": "I-HealthCareActivity",
|
| 55 |
+
"43": "B-HealthCareRelatedOrganization",
|
| 56 |
+
"44": "I-HealthCareRelatedOrganization",
|
| 57 |
+
"45": "B-IndividualBehavior",
|
| 58 |
+
"46": "I-IndividualBehavior",
|
| 59 |
+
"47": "B-InjuryOrPoisoning",
|
| 60 |
+
"48": "I-InjuryOrPoisoning",
|
| 61 |
+
"49": "B-MachineActivity",
|
| 62 |
+
"50": "I-MachineActivity",
|
| 63 |
+
"51": "B-ManufacturedObject",
|
| 64 |
+
"52": "I-ManufacturedObject",
|
| 65 |
+
"53": "B-MolecularSequence",
|
| 66 |
+
"54": "I-MolecularSequence",
|
| 67 |
+
"55": "B-NaturalPhenomenonOrProcess",
|
| 68 |
+
"56": "I-NaturalPhenomenonOrProcess",
|
| 69 |
+
"57": "B-NucleicAcidNucleosideOrNucleotide",
|
| 70 |
+
"58": "I-NucleicAcidNucleosideOrNucleotide",
|
| 71 |
+
"59": "B-Organism",
|
| 72 |
+
"60": "I-Organism",
|
| 73 |
+
"61": "B-OrganismAttribute",
|
| 74 |
+
"62": "I-OrganismAttribute",
|
| 75 |
+
"63": "B-PathologicFunction",
|
| 76 |
+
"64": "I-PathologicFunction",
|
| 77 |
+
"65": "B-PatientOrDisabledGroup",
|
| 78 |
+
"66": "I-PatientOrDisabledGroup",
|
| 79 |
+
"67": "B-PharmacologicSubstance",
|
| 80 |
+
"68": "I-PharmacologicSubstance",
|
| 81 |
+
"69": "B-PopulationGroup",
|
| 82 |
+
"70": "I-PopulationGroup",
|
| 83 |
+
"71": "B-ResearchActivity",
|
| 84 |
+
"72": "I-ResearchActivity",
|
| 85 |
+
"73": "B-SignOrSymptom",
|
| 86 |
+
"74": "I-SignOrSymptom",
|
| 87 |
+
"75": "B-Substance",
|
| 88 |
+
"76": "I-Substance",
|
| 89 |
+
"77": "B-TemporalConcept",
|
| 90 |
+
"78": "I-TemporalConcept",
|
| 91 |
+
"79": "B-Virus",
|
| 92 |
+
"80": "I-Virus"
|
| 93 |
+
},
|
| 94 |
+
"initializer_range": 0.02,
|
| 95 |
+
"intermediate_size": 3072,
|
| 96 |
+
"label2id": {
|
| 97 |
+
"B-AminoAcidPeptideOrProtein": 1,
|
| 98 |
+
"B-AnatomicalAbnormality": 3,
|
| 99 |
+
"B-Bacterium": 5,
|
| 100 |
+
"B-BiologicFunction": 7,
|
| 101 |
+
"B-BiologicallyActiveSubstance": 9,
|
| 102 |
+
"B-BiomedicalOccupationOrDiscipline": 11,
|
| 103 |
+
"B-BodyPartOrganOrOrganComponent": 13,
|
| 104 |
+
"B-Cell": 15,
|
| 105 |
+
"B-CellComponent": 17,
|
| 106 |
+
"B-CellFunction": 19,
|
| 107 |
+
"B-CellOrMolecularDysfunction": 21,
|
| 108 |
+
"B-Chemical": 23,
|
| 109 |
+
"B-ClinicalAttribute": 25,
|
| 110 |
+
"B-DiseaseOrSyndrome": 27,
|
| 111 |
+
"B-EmbryonicStructure": 29,
|
| 112 |
+
"B-EnvironmentalEffectOfHumans": 31,
|
| 113 |
+
"B-Eukaryote": 33,
|
| 114 |
+
"B-ExperimentalModelOfDisease": 35,
|
| 115 |
+
"B-Finding": 37,
|
| 116 |
+
"B-GeneOrGenome": 39,
|
| 117 |
+
"B-HealthCareActivity": 41,
|
| 118 |
+
"B-HealthCareRelatedOrganization": 43,
|
| 119 |
+
"B-IndividualBehavior": 45,
|
| 120 |
+
"B-InjuryOrPoisoning": 47,
|
| 121 |
+
"B-MachineActivity": 49,
|
| 122 |
+
"B-ManufacturedObject": 51,
|
| 123 |
+
"B-MolecularSequence": 53,
|
| 124 |
+
"B-NaturalPhenomenonOrProcess": 55,
|
| 125 |
+
"B-NucleicAcidNucleosideOrNucleotide": 57,
|
| 126 |
+
"B-Organism": 59,
|
| 127 |
+
"B-OrganismAttribute": 61,
|
| 128 |
+
"B-PathologicFunction": 63,
|
| 129 |
+
"B-PatientOrDisabledGroup": 65,
|
| 130 |
+
"B-PharmacologicSubstance": 67,
|
| 131 |
+
"B-PopulationGroup": 69,
|
| 132 |
+
"B-ResearchActivity": 71,
|
| 133 |
+
"B-SignOrSymptom": 73,
|
| 134 |
+
"B-Substance": 75,
|
| 135 |
+
"B-TemporalConcept": 77,
|
| 136 |
+
"B-Virus": 79,
|
| 137 |
+
"I-AminoAcidPeptideOrProtein": 2,
|
| 138 |
+
"I-AnatomicalAbnormality": 4,
|
| 139 |
+
"I-Bacterium": 6,
|
| 140 |
+
"I-BiologicFunction": 8,
|
| 141 |
+
"I-BiologicallyActiveSubstance": 10,
|
| 142 |
+
"I-BiomedicalOccupationOrDiscipline": 12,
|
| 143 |
+
"I-BodyPartOrganOrOrganComponent": 14,
|
| 144 |
+
"I-Cell": 16,
|
| 145 |
+
"I-CellComponent": 18,
|
| 146 |
+
"I-CellFunction": 20,
|
| 147 |
+
"I-CellOrMolecularDysfunction": 22,
|
| 148 |
+
"I-Chemical": 24,
|
| 149 |
+
"I-ClinicalAttribute": 26,
|
| 150 |
+
"I-DiseaseOrSyndrome": 28,
|
| 151 |
+
"I-EmbryonicStructure": 30,
|
| 152 |
+
"I-EnvironmentalEffectOfHumans": 32,
|
| 153 |
+
"I-Eukaryote": 34,
|
| 154 |
+
"I-ExperimentalModelOfDisease": 36,
|
| 155 |
+
"I-Finding": 38,
|
| 156 |
+
"I-GeneOrGenome": 40,
|
| 157 |
+
"I-HealthCareActivity": 42,
|
| 158 |
+
"I-HealthCareRelatedOrganization": 44,
|
| 159 |
+
"I-IndividualBehavior": 46,
|
| 160 |
+
"I-InjuryOrPoisoning": 48,
|
| 161 |
+
"I-MachineActivity": 50,
|
| 162 |
+
"I-ManufacturedObject": 52,
|
| 163 |
+
"I-MolecularSequence": 54,
|
| 164 |
+
"I-NaturalPhenomenonOrProcess": 56,
|
| 165 |
+
"I-NucleicAcidNucleosideOrNucleotide": 58,
|
| 166 |
+
"I-Organism": 60,
|
| 167 |
+
"I-OrganismAttribute": 62,
|
| 168 |
+
"I-PathologicFunction": 64,
|
| 169 |
+
"I-PatientOrDisabledGroup": 66,
|
| 170 |
+
"I-PharmacologicSubstance": 68,
|
| 171 |
+
"I-PopulationGroup": 70,
|
| 172 |
+
"I-ResearchActivity": 72,
|
| 173 |
+
"I-SignOrSymptom": 74,
|
| 174 |
+
"I-Substance": 76,
|
| 175 |
+
"I-TemporalConcept": 78,
|
| 176 |
+
"I-Virus": 80,
|
| 177 |
+
"O": 0
|
| 178 |
+
},
|
| 179 |
+
"layer_norm_eps": 1e-12,
|
| 180 |
+
"max_position_embeddings": 512,
|
| 181 |
+
"model_type": "bert",
|
| 182 |
+
"num_attention_heads": 12,
|
| 183 |
+
"num_hidden_layers": 12,
|
| 184 |
+
"pad_token_id": 0,
|
| 185 |
+
"position_embedding_type": "absolute",
|
| 186 |
+
"torch_dtype": "float32",
|
| 187 |
+
"transformers_version": "4.26.1",
|
| 188 |
+
"type_vocab_size": 2,
|
| 189 |
+
"use_cache": true,
|
| 190 |
+
"vocab_size": 28996
|
| 191 |
+
}
|
optimizer.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:fc5a690251387e7c4abbc0257d1cb60a3901750f058a68700eb573911e8845f1
|
| 3 |
+
size 862372485
|
pytorch_model.bin
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:c94f99d936cb764da529e4172ba9b504ff6fdca72a148f5ac4e2b56ae4705c1c
|
| 3 |
+
size 431200045
|
rng_state.pth
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:0fbf98960b1d37f3d7f1e40bd9109bd90c6083f4351ad16a035fd77c46cc246b
|
| 3 |
+
size 14575
|
scheduler.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:557b72f76881bf8a1d12cd8c3b0505b0f60ccab420c11c3fcb6ec1e992c43a33
|
| 3 |
+
size 627
|
special_tokens_map.json
ADDED
|
@@ -0,0 +1,7 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"cls_token": "[CLS]",
|
| 3 |
+
"mask_token": "[MASK]",
|
| 4 |
+
"pad_token": "[PAD]",
|
| 5 |
+
"sep_token": "[SEP]",
|
| 6 |
+
"unk_token": "[UNK]"
|
| 7 |
+
}
|
tokenizer.json
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
tokenizer_config.json
ADDED
|
@@ -0,0 +1,16 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"cls_token": "[CLS]",
|
| 3 |
+
"do_basic_tokenize": true,
|
| 4 |
+
"do_lower_case": true,
|
| 5 |
+
"mask_token": "[MASK]",
|
| 6 |
+
"model_max_length": 1000000000000000019884624838656,
|
| 7 |
+
"name_or_path": "dmis-lab/biobert-base-cased-v1.1",
|
| 8 |
+
"never_split": null,
|
| 9 |
+
"pad_token": "[PAD]",
|
| 10 |
+
"sep_token": "[SEP]",
|
| 11 |
+
"special_tokens_map_file": null,
|
| 12 |
+
"strip_accents": null,
|
| 13 |
+
"tokenize_chinese_chars": true,
|
| 14 |
+
"tokenizer_class": "BertTokenizer",
|
| 15 |
+
"unk_token": "[UNK]"
|
| 16 |
+
}
|
trainer_state.json
ADDED
|
@@ -0,0 +1,912 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"best_metric": 0.4340449964697465,
|
| 3 |
+
"best_model_checkpoint": "modelPaper2_args/checkpoint-1120",
|
| 4 |
+
"epoch": 10.0,
|
| 5 |
+
"global_step": 1120,
|
| 6 |
+
"is_hyper_param_search": false,
|
| 7 |
+
"is_local_process_zero": true,
|
| 8 |
+
"is_world_process_zero": true,
|
| 9 |
+
"log_history": [
|
| 10 |
+
{
|
| 11 |
+
"epoch": 1.0,
|
| 12 |
+
"eval_f1_B-AminoAcidPeptideOrProtein": 0,
|
| 13 |
+
"eval_f1_B-AnatomicalAbnormality": 0,
|
| 14 |
+
"eval_f1_B-Bacterium": 0,
|
| 15 |
+
"eval_f1_B-BiologicFunction": 0,
|
| 16 |
+
"eval_f1_B-BiologicallyActiveSubstance": 0,
|
| 17 |
+
"eval_f1_B-BiomedicalOccupationOrDiscipline": 0,
|
| 18 |
+
"eval_f1_B-BodyPartOrganOrOrganComponent": 0,
|
| 19 |
+
"eval_f1_B-Cell": 0,
|
| 20 |
+
"eval_f1_B-CellComponent": 0,
|
| 21 |
+
"eval_f1_B-CellFunction": 0,
|
| 22 |
+
"eval_f1_B-CellOrMolecularDysfunction": 0,
|
| 23 |
+
"eval_f1_B-Chemical": 0,
|
| 24 |
+
"eval_f1_B-ClinicalAttribute": 0,
|
| 25 |
+
"eval_f1_B-DiseaseOrSyndrome": 0,
|
| 26 |
+
"eval_f1_B-EmbryonicStructure": 0,
|
| 27 |
+
"eval_f1_B-EnvironmentalEffectOfHumans": 0,
|
| 28 |
+
"eval_f1_B-Eukaryote": 0,
|
| 29 |
+
"eval_f1_B-ExperimentalModelOfDisease": 0,
|
| 30 |
+
"eval_f1_B-Finding": 0,
|
| 31 |
+
"eval_f1_B-GeneOrGenome": 0,
|
| 32 |
+
"eval_f1_B-HealthCareActivity": 0,
|
| 33 |
+
"eval_f1_B-HealthCareRelatedOrganization": 0,
|
| 34 |
+
"eval_f1_B-IndividualBehavior": 0,
|
| 35 |
+
"eval_f1_B-InjuryOrPoisoning": 0,
|
| 36 |
+
"eval_f1_B-MachineActivity": 0,
|
| 37 |
+
"eval_f1_B-ManufacturedObject": 0,
|
| 38 |
+
"eval_f1_B-MolecularSequence": 0,
|
| 39 |
+
"eval_f1_B-NaturalPhenomenonOrProcess": 0,
|
| 40 |
+
"eval_f1_B-NucleicAcidNucleosideOrNucleotide": 0,
|
| 41 |
+
"eval_f1_B-Organism": 0,
|
| 42 |
+
"eval_f1_B-OrganismAttribute": 0,
|
| 43 |
+
"eval_f1_B-PathologicFunction": 0,
|
| 44 |
+
"eval_f1_B-PatientOrDisabledGroup": 0,
|
| 45 |
+
"eval_f1_B-PharmacologicSubstance": 0,
|
| 46 |
+
"eval_f1_B-PopulationGroup": 0,
|
| 47 |
+
"eval_f1_B-ResearchActivity": 0,
|
| 48 |
+
"eval_f1_B-SignOrSymptom": 0,
|
| 49 |
+
"eval_f1_B-Substance": 0,
|
| 50 |
+
"eval_f1_B-TemporalConcept": 0,
|
| 51 |
+
"eval_f1_B-Virus": 0,
|
| 52 |
+
"eval_f1_I-AminoAcidPeptideOrProtein": 0,
|
| 53 |
+
"eval_f1_I-AnatomicalAbnormality": 0,
|
| 54 |
+
"eval_f1_I-Bacterium": 0,
|
| 55 |
+
"eval_f1_I-BiologicFunction": 0,
|
| 56 |
+
"eval_f1_I-BiologicallyActiveSubstance": 0,
|
| 57 |
+
"eval_f1_I-BiomedicalOccupationOrDiscipline": 0,
|
| 58 |
+
"eval_f1_I-BodyPartOrganOrOrganComponent": 0,
|
| 59 |
+
"eval_f1_I-Cell": 0,
|
| 60 |
+
"eval_f1_I-CellComponent": 0,
|
| 61 |
+
"eval_f1_I-CellFunction": 0,
|
| 62 |
+
"eval_f1_I-CellOrMolecularDysfunction": 0,
|
| 63 |
+
"eval_f1_I-Chemical": 0,
|
| 64 |
+
"eval_f1_I-ClinicalAttribute": 0,
|
| 65 |
+
"eval_f1_I-DiseaseOrSyndrome": 0,
|
| 66 |
+
"eval_f1_I-EmbryonicStructure": 0,
|
| 67 |
+
"eval_f1_I-EnvironmentalEffectOfHumans": 0,
|
| 68 |
+
"eval_f1_I-Eukaryote": 0,
|
| 69 |
+
"eval_f1_I-ExperimentalModelOfDisease": 0,
|
| 70 |
+
"eval_f1_I-Finding": 0,
|
| 71 |
+
"eval_f1_I-GeneOrGenome": 0,
|
| 72 |
+
"eval_f1_I-HealthCareActivity": 0,
|
| 73 |
+
"eval_f1_I-HealthCareRelatedOrganization": 0,
|
| 74 |
+
"eval_f1_I-IndividualBehavior": 0,
|
| 75 |
+
"eval_f1_I-InjuryOrPoisoning": 0,
|
| 76 |
+
"eval_f1_I-MachineActivity": 0,
|
| 77 |
+
"eval_f1_I-ManufacturedObject": 0,
|
| 78 |
+
"eval_f1_I-MolecularSequence": 0,
|
| 79 |
+
"eval_f1_I-NaturalPhenomenonOrProcess": 0,
|
| 80 |
+
"eval_f1_I-NucleicAcidNucleosideOrNucleotide": 0,
|
| 81 |
+
"eval_f1_I-Organism": 0,
|
| 82 |
+
"eval_f1_I-OrganismAttribute": 0,
|
| 83 |
+
"eval_f1_I-PathologicFunction": 0,
|
| 84 |
+
"eval_f1_I-PatientOrDisabledGroup": 0,
|
| 85 |
+
"eval_f1_I-PharmacologicSubstance": 0,
|
| 86 |
+
"eval_f1_I-PopulationGroup": 0,
|
| 87 |
+
"eval_f1_I-ResearchActivity": 0,
|
| 88 |
+
"eval_f1_I-SignOrSymptom": 0,
|
| 89 |
+
"eval_f1_I-Substance": 0,
|
| 90 |
+
"eval_f1_I-TemporalConcept": 0,
|
| 91 |
+
"eval_f1_I-Virus": 0,
|
| 92 |
+
"eval_loss": 0.006609904579818249,
|
| 93 |
+
"eval_macro_f1": 0.0,
|
| 94 |
+
"eval_runtime": 54.9068,
|
| 95 |
+
"eval_samples_per_second": 14.479,
|
| 96 |
+
"eval_steps_per_second": 0.291,
|
| 97 |
+
"step": 112
|
| 98 |
+
},
|
| 99 |
+
{
|
| 100 |
+
"epoch": 2.0,
|
| 101 |
+
"eval_f1_B-AminoAcidPeptideOrProtein": 0,
|
| 102 |
+
"eval_f1_B-AnatomicalAbnormality": 0,
|
| 103 |
+
"eval_f1_B-Bacterium": 0,
|
| 104 |
+
"eval_f1_B-BiologicFunction": 0,
|
| 105 |
+
"eval_f1_B-BiologicallyActiveSubstance": 0,
|
| 106 |
+
"eval_f1_B-BiomedicalOccupationOrDiscipline": 0,
|
| 107 |
+
"eval_f1_B-BodyPartOrganOrOrganComponent": 0,
|
| 108 |
+
"eval_f1_B-Cell": 0,
|
| 109 |
+
"eval_f1_B-CellComponent": 0,
|
| 110 |
+
"eval_f1_B-CellFunction": 0,
|
| 111 |
+
"eval_f1_B-CellOrMolecularDysfunction": 0,
|
| 112 |
+
"eval_f1_B-Chemical": 0,
|
| 113 |
+
"eval_f1_B-ClinicalAttribute": 0,
|
| 114 |
+
"eval_f1_B-DiseaseOrSyndrome": 0,
|
| 115 |
+
"eval_f1_B-EmbryonicStructure": 0,
|
| 116 |
+
"eval_f1_B-EnvironmentalEffectOfHumans": 0,
|
| 117 |
+
"eval_f1_B-Eukaryote": 0,
|
| 118 |
+
"eval_f1_B-ExperimentalModelOfDisease": 0,
|
| 119 |
+
"eval_f1_B-Finding": 0,
|
| 120 |
+
"eval_f1_B-GeneOrGenome": 0,
|
| 121 |
+
"eval_f1_B-HealthCareActivity": 0,
|
| 122 |
+
"eval_f1_B-HealthCareRelatedOrganization": 0,
|
| 123 |
+
"eval_f1_B-IndividualBehavior": 0,
|
| 124 |
+
"eval_f1_B-InjuryOrPoisoning": 0,
|
| 125 |
+
"eval_f1_B-MachineActivity": 0,
|
| 126 |
+
"eval_f1_B-ManufacturedObject": 0,
|
| 127 |
+
"eval_f1_B-MolecularSequence": 0,
|
| 128 |
+
"eval_f1_B-NaturalPhenomenonOrProcess": 0,
|
| 129 |
+
"eval_f1_B-NucleicAcidNucleosideOrNucleotide": 0,
|
| 130 |
+
"eval_f1_B-Organism": 0,
|
| 131 |
+
"eval_f1_B-OrganismAttribute": 0,
|
| 132 |
+
"eval_f1_B-PathologicFunction": 0,
|
| 133 |
+
"eval_f1_B-PatientOrDisabledGroup": 0,
|
| 134 |
+
"eval_f1_B-PharmacologicSubstance": 0,
|
| 135 |
+
"eval_f1_B-PopulationGroup": 0,
|
| 136 |
+
"eval_f1_B-ResearchActivity": 0,
|
| 137 |
+
"eval_f1_B-SignOrSymptom": 0,
|
| 138 |
+
"eval_f1_B-Substance": 0,
|
| 139 |
+
"eval_f1_B-TemporalConcept": 0,
|
| 140 |
+
"eval_f1_B-Virus": 0,
|
| 141 |
+
"eval_f1_I-AminoAcidPeptideOrProtein": 0.6159238858287431,
|
| 142 |
+
"eval_f1_I-AnatomicalAbnormality": 0,
|
| 143 |
+
"eval_f1_I-Bacterium": 0,
|
| 144 |
+
"eval_f1_I-BiologicFunction": 0,
|
| 145 |
+
"eval_f1_I-BiologicallyActiveSubstance": 0.5667752442996742,
|
| 146 |
+
"eval_f1_I-BiomedicalOccupationOrDiscipline": 0,
|
| 147 |
+
"eval_f1_I-BodyPartOrganOrOrganComponent": 0,
|
| 148 |
+
"eval_f1_I-Cell": 0,
|
| 149 |
+
"eval_f1_I-CellComponent": 0,
|
| 150 |
+
"eval_f1_I-CellFunction": 0,
|
| 151 |
+
"eval_f1_I-CellOrMolecularDysfunction": 0,
|
| 152 |
+
"eval_f1_I-Chemical": 0,
|
| 153 |
+
"eval_f1_I-ClinicalAttribute": 0,
|
| 154 |
+
"eval_f1_I-DiseaseOrSyndrome": 0.8225339568024937,
|
| 155 |
+
"eval_f1_I-EmbryonicStructure": 0,
|
| 156 |
+
"eval_f1_I-EnvironmentalEffectOfHumans": 0,
|
| 157 |
+
"eval_f1_I-Eukaryote": 0,
|
| 158 |
+
"eval_f1_I-ExperimentalModelOfDisease": 0,
|
| 159 |
+
"eval_f1_I-Finding": 0,
|
| 160 |
+
"eval_f1_I-GeneOrGenome": 0,
|
| 161 |
+
"eval_f1_I-HealthCareActivity": 0,
|
| 162 |
+
"eval_f1_I-HealthCareRelatedOrganization": 0,
|
| 163 |
+
"eval_f1_I-IndividualBehavior": 0,
|
| 164 |
+
"eval_f1_I-InjuryOrPoisoning": 0,
|
| 165 |
+
"eval_f1_I-MachineActivity": 0,
|
| 166 |
+
"eval_f1_I-ManufacturedObject": 0,
|
| 167 |
+
"eval_f1_I-MolecularSequence": 0,
|
| 168 |
+
"eval_f1_I-NaturalPhenomenonOrProcess": 0,
|
| 169 |
+
"eval_f1_I-NucleicAcidNucleosideOrNucleotide": 0,
|
| 170 |
+
"eval_f1_I-Organism": 0,
|
| 171 |
+
"eval_f1_I-OrganismAttribute": 0,
|
| 172 |
+
"eval_f1_I-PathologicFunction": 0,
|
| 173 |
+
"eval_f1_I-PatientOrDisabledGroup": 0,
|
| 174 |
+
"eval_f1_I-PharmacologicSubstance": 0,
|
| 175 |
+
"eval_f1_I-PopulationGroup": 0,
|
| 176 |
+
"eval_f1_I-ResearchActivity": 0,
|
| 177 |
+
"eval_f1_I-SignOrSymptom": 0,
|
| 178 |
+
"eval_f1_I-Substance": 0,
|
| 179 |
+
"eval_f1_I-TemporalConcept": 0,
|
| 180 |
+
"eval_f1_I-Virus": 0,
|
| 181 |
+
"eval_loss": 0.003692361293360591,
|
| 182 |
+
"eval_macro_f1": 0.025065413586636387,
|
| 183 |
+
"eval_runtime": 51.0385,
|
| 184 |
+
"eval_samples_per_second": 15.576,
|
| 185 |
+
"eval_steps_per_second": 0.313,
|
| 186 |
+
"step": 224
|
| 187 |
+
},
|
| 188 |
+
{
|
| 189 |
+
"epoch": 3.0,
|
| 190 |
+
"eval_f1_B-AminoAcidPeptideOrProtein": 0.7192716236722307,
|
| 191 |
+
"eval_f1_B-AnatomicalAbnormality": 0,
|
| 192 |
+
"eval_f1_B-Bacterium": 0,
|
| 193 |
+
"eval_f1_B-BiologicFunction": 0,
|
| 194 |
+
"eval_f1_B-BiologicallyActiveSubstance": 0.5970695970695972,
|
| 195 |
+
"eval_f1_B-BiomedicalOccupationOrDiscipline": 0,
|
| 196 |
+
"eval_f1_B-BodyPartOrganOrOrganComponent": 0.010075566750629723,
|
| 197 |
+
"eval_f1_B-Cell": 0.5870646766169154,
|
| 198 |
+
"eval_f1_B-CellComponent": 0,
|
| 199 |
+
"eval_f1_B-CellFunction": 0,
|
| 200 |
+
"eval_f1_B-CellOrMolecularDysfunction": 0,
|
| 201 |
+
"eval_f1_B-Chemical": 0,
|
| 202 |
+
"eval_f1_B-ClinicalAttribute": 0,
|
| 203 |
+
"eval_f1_B-DiseaseOrSyndrome": 0.8617234468937877,
|
| 204 |
+
"eval_f1_B-EmbryonicStructure": 0,
|
| 205 |
+
"eval_f1_B-EnvironmentalEffectOfHumans": 0,
|
| 206 |
+
"eval_f1_B-Eukaryote": 0,
|
| 207 |
+
"eval_f1_B-ExperimentalModelOfDisease": 0,
|
| 208 |
+
"eval_f1_B-Finding": 0,
|
| 209 |
+
"eval_f1_B-GeneOrGenome": 0,
|
| 210 |
+
"eval_f1_B-HealthCareActivity": 0,
|
| 211 |
+
"eval_f1_B-HealthCareRelatedOrganization": 0,
|
| 212 |
+
"eval_f1_B-IndividualBehavior": 0,
|
| 213 |
+
"eval_f1_B-InjuryOrPoisoning": 0,
|
| 214 |
+
"eval_f1_B-MachineActivity": 0,
|
| 215 |
+
"eval_f1_B-ManufacturedObject": 0,
|
| 216 |
+
"eval_f1_B-MolecularSequence": 0,
|
| 217 |
+
"eval_f1_B-NaturalPhenomenonOrProcess": 0,
|
| 218 |
+
"eval_f1_B-NucleicAcidNucleosideOrNucleotide": 0,
|
| 219 |
+
"eval_f1_B-Organism": 0,
|
| 220 |
+
"eval_f1_B-OrganismAttribute": 0,
|
| 221 |
+
"eval_f1_B-PathologicFunction": 0,
|
| 222 |
+
"eval_f1_B-PatientOrDisabledGroup": 0,
|
| 223 |
+
"eval_f1_B-PharmacologicSubstance": 0,
|
| 224 |
+
"eval_f1_B-PopulationGroup": 0,
|
| 225 |
+
"eval_f1_B-ResearchActivity": 0,
|
| 226 |
+
"eval_f1_B-SignOrSymptom": 0,
|
| 227 |
+
"eval_f1_B-Substance": 0,
|
| 228 |
+
"eval_f1_B-TemporalConcept": 0,
|
| 229 |
+
"eval_f1_B-Virus": 0,
|
| 230 |
+
"eval_f1_I-AminoAcidPeptideOrProtein": 0.7526291723822588,
|
| 231 |
+
"eval_f1_I-AnatomicalAbnormality": 0,
|
| 232 |
+
"eval_f1_I-Bacterium": 0,
|
| 233 |
+
"eval_f1_I-BiologicFunction": 0,
|
| 234 |
+
"eval_f1_I-BiologicallyActiveSubstance": 0.7052730696798494,
|
| 235 |
+
"eval_f1_I-BiomedicalOccupationOrDiscipline": 0,
|
| 236 |
+
"eval_f1_I-BodyPartOrganOrOrganComponent": 0.8206144697720515,
|
| 237 |
+
"eval_f1_I-Cell": 0.7310704960835509,
|
| 238 |
+
"eval_f1_I-CellComponent": 0.2272727272727273,
|
| 239 |
+
"eval_f1_I-CellFunction": 0.5116279069767441,
|
| 240 |
+
"eval_f1_I-CellOrMolecularDysfunction": 0,
|
| 241 |
+
"eval_f1_I-Chemical": 0.34636871508379885,
|
| 242 |
+
"eval_f1_I-ClinicalAttribute": 0,
|
| 243 |
+
"eval_f1_I-DiseaseOrSyndrome": 0.880718255664814,
|
| 244 |
+
"eval_f1_I-EmbryonicStructure": 0,
|
| 245 |
+
"eval_f1_I-EnvironmentalEffectOfHumans": 0,
|
| 246 |
+
"eval_f1_I-Eukaryote": 0,
|
| 247 |
+
"eval_f1_I-ExperimentalModelOfDisease": 0,
|
| 248 |
+
"eval_f1_I-Finding": 0,
|
| 249 |
+
"eval_f1_I-GeneOrGenome": 0,
|
| 250 |
+
"eval_f1_I-HealthCareActivity": 0,
|
| 251 |
+
"eval_f1_I-HealthCareRelatedOrganization": 0,
|
| 252 |
+
"eval_f1_I-IndividualBehavior": 0,
|
| 253 |
+
"eval_f1_I-InjuryOrPoisoning": 0,
|
| 254 |
+
"eval_f1_I-MachineActivity": 0,
|
| 255 |
+
"eval_f1_I-ManufacturedObject": 0,
|
| 256 |
+
"eval_f1_I-MolecularSequence": 0,
|
| 257 |
+
"eval_f1_I-NaturalPhenomenonOrProcess": 0,
|
| 258 |
+
"eval_f1_I-NucleicAcidNucleosideOrNucleotide": 0,
|
| 259 |
+
"eval_f1_I-Organism": 0,
|
| 260 |
+
"eval_f1_I-OrganismAttribute": 0,
|
| 261 |
+
"eval_f1_I-PathologicFunction": 0.035955056179775284,
|
| 262 |
+
"eval_f1_I-PatientOrDisabledGroup": 0,
|
| 263 |
+
"eval_f1_I-PharmacologicSubstance": 0,
|
| 264 |
+
"eval_f1_I-PopulationGroup": 0,
|
| 265 |
+
"eval_f1_I-ResearchActivity": 0.2215122470713525,
|
| 266 |
+
"eval_f1_I-SignOrSymptom": 0,
|
| 267 |
+
"eval_f1_I-Substance": 0,
|
| 268 |
+
"eval_f1_I-TemporalConcept": 0,
|
| 269 |
+
"eval_f1_I-Virus": 0,
|
| 270 |
+
"eval_loss": 0.0024415908847004175,
|
| 271 |
+
"eval_macro_f1": 0.10010308783962603,
|
| 272 |
+
"eval_runtime": 51.2011,
|
| 273 |
+
"eval_samples_per_second": 15.527,
|
| 274 |
+
"eval_steps_per_second": 0.312,
|
| 275 |
+
"step": 336
|
| 276 |
+
},
|
| 277 |
+
{
|
| 278 |
+
"epoch": 4.0,
|
| 279 |
+
"eval_f1_B-AminoAcidPeptideOrProtein": 0.7728531855955679,
|
| 280 |
+
"eval_f1_B-AnatomicalAbnormality": 0,
|
| 281 |
+
"eval_f1_B-Bacterium": 0,
|
| 282 |
+
"eval_f1_B-BiologicFunction": 0.04219409282700421,
|
| 283 |
+
"eval_f1_B-BiologicallyActiveSubstance": 0.7197452229299363,
|
| 284 |
+
"eval_f1_B-BiomedicalOccupationOrDiscipline": 0,
|
| 285 |
+
"eval_f1_B-BodyPartOrganOrOrganComponent": 0.7841726618705036,
|
| 286 |
+
"eval_f1_B-Cell": 0.6200873362445415,
|
| 287 |
+
"eval_f1_B-CellComponent": 0.26666666666666666,
|
| 288 |
+
"eval_f1_B-CellFunction": 0.5899280575539568,
|
| 289 |
+
"eval_f1_B-CellOrMolecularDysfunction": 0,
|
| 290 |
+
"eval_f1_B-Chemical": 0.18181818181818182,
|
| 291 |
+
"eval_f1_B-ClinicalAttribute": 0,
|
| 292 |
+
"eval_f1_B-DiseaseOrSyndrome": 0.8697394789579158,
|
| 293 |
+
"eval_f1_B-EmbryonicStructure": 0,
|
| 294 |
+
"eval_f1_B-EnvironmentalEffectOfHumans": 0,
|
| 295 |
+
"eval_f1_B-Eukaryote": 0,
|
| 296 |
+
"eval_f1_B-ExperimentalModelOfDisease": 0,
|
| 297 |
+
"eval_f1_B-Finding": 0.004,
|
| 298 |
+
"eval_f1_B-GeneOrGenome": 0,
|
| 299 |
+
"eval_f1_B-HealthCareActivity": 0.08333333333333333,
|
| 300 |
+
"eval_f1_B-HealthCareRelatedOrganization": 0,
|
| 301 |
+
"eval_f1_B-IndividualBehavior": 0,
|
| 302 |
+
"eval_f1_B-InjuryOrPoisoning": 0,
|
| 303 |
+
"eval_f1_B-MachineActivity": 0,
|
| 304 |
+
"eval_f1_B-ManufacturedObject": 0,
|
| 305 |
+
"eval_f1_B-MolecularSequence": 0,
|
| 306 |
+
"eval_f1_B-NaturalPhenomenonOrProcess": 0,
|
| 307 |
+
"eval_f1_B-NucleicAcidNucleosideOrNucleotide": 0,
|
| 308 |
+
"eval_f1_B-Organism": 0,
|
| 309 |
+
"eval_f1_B-OrganismAttribute": 0,
|
| 310 |
+
"eval_f1_B-PathologicFunction": 0.027397260273972608,
|
| 311 |
+
"eval_f1_B-PatientOrDisabledGroup": 0,
|
| 312 |
+
"eval_f1_B-PharmacologicSubstance": 0,
|
| 313 |
+
"eval_f1_B-PopulationGroup": 0,
|
| 314 |
+
"eval_f1_B-ResearchActivity": 0.5954045954045953,
|
| 315 |
+
"eval_f1_B-SignOrSymptom": 0,
|
| 316 |
+
"eval_f1_B-Substance": 0,
|
| 317 |
+
"eval_f1_B-TemporalConcept": 0.6085192697768763,
|
| 318 |
+
"eval_f1_B-Virus": 0,
|
| 319 |
+
"eval_f1_I-AminoAcidPeptideOrProtein": 0.790073230268511,
|
| 320 |
+
"eval_f1_I-AnatomicalAbnormality": 0,
|
| 321 |
+
"eval_f1_I-Bacterium": 0,
|
| 322 |
+
"eval_f1_I-BiologicFunction": 0,
|
| 323 |
+
"eval_f1_I-BiologicallyActiveSubstance": 0.7523629489603024,
|
| 324 |
+
"eval_f1_I-BiomedicalOccupationOrDiscipline": 0,
|
| 325 |
+
"eval_f1_I-BodyPartOrganOrOrganComponent": 0.8356643356643355,
|
| 326 |
+
"eval_f1_I-Cell": 0.7403598971722365,
|
| 327 |
+
"eval_f1_I-CellComponent": 0.3972602739726028,
|
| 328 |
+
"eval_f1_I-CellFunction": 0.6139534883720932,
|
| 329 |
+
"eval_f1_I-CellOrMolecularDysfunction": 0.8373626373626373,
|
| 330 |
+
"eval_f1_I-Chemical": 0.5253164556962026,
|
| 331 |
+
"eval_f1_I-ClinicalAttribute": 0.43928194297782475,
|
| 332 |
+
"eval_f1_I-DiseaseOrSyndrome": 0.87945380840623,
|
| 333 |
+
"eval_f1_I-EmbryonicStructure": 0,
|
| 334 |
+
"eval_f1_I-EnvironmentalEffectOfHumans": 0,
|
| 335 |
+
"eval_f1_I-Eukaryote": 0,
|
| 336 |
+
"eval_f1_I-ExperimentalModelOfDisease": 0.5567010309278351,
|
| 337 |
+
"eval_f1_I-Finding": 0,
|
| 338 |
+
"eval_f1_I-GeneOrGenome": 0.05333333333333332,
|
| 339 |
+
"eval_f1_I-HealthCareActivity": 0.6122448979591837,
|
| 340 |
+
"eval_f1_I-HealthCareRelatedOrganization": 0,
|
| 341 |
+
"eval_f1_I-IndividualBehavior": 0,
|
| 342 |
+
"eval_f1_I-InjuryOrPoisoning": 0,
|
| 343 |
+
"eval_f1_I-MachineActivity": 0,
|
| 344 |
+
"eval_f1_I-ManufacturedObject": 0,
|
| 345 |
+
"eval_f1_I-MolecularSequence": 0,
|
| 346 |
+
"eval_f1_I-NaturalPhenomenonOrProcess": 0,
|
| 347 |
+
"eval_f1_I-NucleicAcidNucleosideOrNucleotide": 0.46153846153846156,
|
| 348 |
+
"eval_f1_I-Organism": 0,
|
| 349 |
+
"eval_f1_I-OrganismAttribute": 0,
|
| 350 |
+
"eval_f1_I-PathologicFunction": 0.7177522349936143,
|
| 351 |
+
"eval_f1_I-PatientOrDisabledGroup": 0,
|
| 352 |
+
"eval_f1_I-PharmacologicSubstance": 0.30303030303030304,
|
| 353 |
+
"eval_f1_I-PopulationGroup": 0,
|
| 354 |
+
"eval_f1_I-ResearchActivity": 0.607350096711799,
|
| 355 |
+
"eval_f1_I-SignOrSymptom": 0,
|
| 356 |
+
"eval_f1_I-Substance": 0,
|
| 357 |
+
"eval_f1_I-TemporalConcept": 0,
|
| 358 |
+
"eval_f1_I-Virus": 0,
|
| 359 |
+
"eval_loss": 0.0019126865081489086,
|
| 360 |
+
"eval_macro_f1": 0.203611234007507,
|
| 361 |
+
"eval_runtime": 50.9929,
|
| 362 |
+
"eval_samples_per_second": 15.59,
|
| 363 |
+
"eval_steps_per_second": 0.314,
|
| 364 |
+
"step": 448
|
| 365 |
+
},
|
| 366 |
+
{
|
| 367 |
+
"epoch": 5.0,
|
| 368 |
+
"eval_f1_B-AminoAcidPeptideOrProtein": 0.7762962962962964,
|
| 369 |
+
"eval_f1_B-AnatomicalAbnormality": 0,
|
| 370 |
+
"eval_f1_B-Bacterium": 0,
|
| 371 |
+
"eval_f1_B-BiologicFunction": 0.44242424242424244,
|
| 372 |
+
"eval_f1_B-BiologicallyActiveSubstance": 0.6882453151618398,
|
| 373 |
+
"eval_f1_B-BiomedicalOccupationOrDiscipline": 0,
|
| 374 |
+
"eval_f1_B-BodyPartOrganOrOrganComponent": 0.7950310559006211,
|
| 375 |
+
"eval_f1_B-Cell": 0.6232558139534884,
|
| 376 |
+
"eval_f1_B-CellComponent": 0.4583333333333333,
|
| 377 |
+
"eval_f1_B-CellFunction": 0.6622950819672132,
|
| 378 |
+
"eval_f1_B-CellOrMolecularDysfunction": 0.2878787878787879,
|
| 379 |
+
"eval_f1_B-Chemical": 0.34375,
|
| 380 |
+
"eval_f1_B-ClinicalAttribute": 0.3586206896551724,
|
| 381 |
+
"eval_f1_B-DiseaseOrSyndrome": 0.8656518861681006,
|
| 382 |
+
"eval_f1_B-EmbryonicStructure": 0,
|
| 383 |
+
"eval_f1_B-EnvironmentalEffectOfHumans": 0,
|
| 384 |
+
"eval_f1_B-Eukaryote": 0.6875,
|
| 385 |
+
"eval_f1_B-ExperimentalModelOfDisease": 0,
|
| 386 |
+
"eval_f1_B-Finding": 0.20797227036395147,
|
| 387 |
+
"eval_f1_B-GeneOrGenome": 0,
|
| 388 |
+
"eval_f1_B-HealthCareActivity": 0.6134663341645885,
|
| 389 |
+
"eval_f1_B-HealthCareRelatedOrganization": 0,
|
| 390 |
+
"eval_f1_B-IndividualBehavior": 0,
|
| 391 |
+
"eval_f1_B-InjuryOrPoisoning": 0,
|
| 392 |
+
"eval_f1_B-MachineActivity": 0,
|
| 393 |
+
"eval_f1_B-ManufacturedObject": 0,
|
| 394 |
+
"eval_f1_B-MolecularSequence": 0,
|
| 395 |
+
"eval_f1_B-NaturalPhenomenonOrProcess": 0,
|
| 396 |
+
"eval_f1_B-NucleicAcidNucleosideOrNucleotide": 0,
|
| 397 |
+
"eval_f1_B-Organism": 0,
|
| 398 |
+
"eval_f1_B-OrganismAttribute": 0,
|
| 399 |
+
"eval_f1_B-PathologicFunction": 0.5534591194968553,
|
| 400 |
+
"eval_f1_B-PatientOrDisabledGroup": 0.8518518518518519,
|
| 401 |
+
"eval_f1_B-PharmacologicSubstance": 0.45569620253164556,
|
| 402 |
+
"eval_f1_B-PopulationGroup": 0.5810055865921788,
|
| 403 |
+
"eval_f1_B-ResearchActivity": 0.6761984861227923,
|
| 404 |
+
"eval_f1_B-SignOrSymptom": 0,
|
| 405 |
+
"eval_f1_B-Substance": 0,
|
| 406 |
+
"eval_f1_B-TemporalConcept": 0.7437722419928825,
|
| 407 |
+
"eval_f1_B-Virus": 0,
|
| 408 |
+
"eval_f1_I-AminoAcidPeptideOrProtein": 0.8062605752961084,
|
| 409 |
+
"eval_f1_I-AnatomicalAbnormality": 0,
|
| 410 |
+
"eval_f1_I-Bacterium": 0,
|
| 411 |
+
"eval_f1_I-BiologicFunction": 0.5345911949685535,
|
| 412 |
+
"eval_f1_I-BiologicallyActiveSubstance": 0.7732057416267942,
|
| 413 |
+
"eval_f1_I-BiomedicalOccupationOrDiscipline": 0,
|
| 414 |
+
"eval_f1_I-BodyPartOrganOrOrganComponent": 0.8581623550401428,
|
| 415 |
+
"eval_f1_I-Cell": 0.7499999999999999,
|
| 416 |
+
"eval_f1_I-CellComponent": 0.4814814814814815,
|
| 417 |
+
"eval_f1_I-CellFunction": 0.6192307692307693,
|
| 418 |
+
"eval_f1_I-CellOrMolecularDysfunction": 0.8132780082987552,
|
| 419 |
+
"eval_f1_I-Chemical": 0.6561264822134387,
|
| 420 |
+
"eval_f1_I-ClinicalAttribute": 0.6176470588235294,
|
| 421 |
+
"eval_f1_I-DiseaseOrSyndrome": 0.8812980358667805,
|
| 422 |
+
"eval_f1_I-EmbryonicStructure": 0,
|
| 423 |
+
"eval_f1_I-EnvironmentalEffectOfHumans": 0,
|
| 424 |
+
"eval_f1_I-Eukaryote": 0,
|
| 425 |
+
"eval_f1_I-ExperimentalModelOfDisease": 0.6956521739130435,
|
| 426 |
+
"eval_f1_I-Finding": 0.1176470588235294,
|
| 427 |
+
"eval_f1_I-GeneOrGenome": 0.2523364485981308,
|
| 428 |
+
"eval_f1_I-HealthCareActivity": 0.6976090014064698,
|
| 429 |
+
"eval_f1_I-HealthCareRelatedOrganization": 0,
|
| 430 |
+
"eval_f1_I-IndividualBehavior": 0,
|
| 431 |
+
"eval_f1_I-InjuryOrPoisoning": 0,
|
| 432 |
+
"eval_f1_I-MachineActivity": 0,
|
| 433 |
+
"eval_f1_I-ManufacturedObject": 0,
|
| 434 |
+
"eval_f1_I-MolecularSequence": 0,
|
| 435 |
+
"eval_f1_I-NaturalPhenomenonOrProcess": 0,
|
| 436 |
+
"eval_f1_I-NucleicAcidNucleosideOrNucleotide": 0.9090909090909091,
|
| 437 |
+
"eval_f1_I-Organism": 0,
|
| 438 |
+
"eval_f1_I-OrganismAttribute": 0,
|
| 439 |
+
"eval_f1_I-PathologicFunction": 0.7175757575757576,
|
| 440 |
+
"eval_f1_I-PatientOrDisabledGroup": 0,
|
| 441 |
+
"eval_f1_I-PharmacologicSubstance": 0.49302325581395345,
|
| 442 |
+
"eval_f1_I-PopulationGroup": 0,
|
| 443 |
+
"eval_f1_I-ResearchActivity": 0.6314540059347181,
|
| 444 |
+
"eval_f1_I-SignOrSymptom": 0,
|
| 445 |
+
"eval_f1_I-Substance": 0,
|
| 446 |
+
"eval_f1_I-TemporalConcept": 0,
|
| 447 |
+
"eval_f1_I-Virus": 0,
|
| 448 |
+
"eval_loss": 0.0016416363650932908,
|
| 449 |
+
"eval_macro_f1": 0.29972968637323383,
|
| 450 |
+
"eval_runtime": 49.4707,
|
| 451 |
+
"eval_samples_per_second": 16.07,
|
| 452 |
+
"eval_steps_per_second": 0.323,
|
| 453 |
+
"step": 560
|
| 454 |
+
},
|
| 455 |
+
{
|
| 456 |
+
"epoch": 6.0,
|
| 457 |
+
"eval_f1_B-AminoAcidPeptideOrProtein": 0.7675675675675676,
|
| 458 |
+
"eval_f1_B-AnatomicalAbnormality": 0,
|
| 459 |
+
"eval_f1_B-Bacterium": 0,
|
| 460 |
+
"eval_f1_B-BiologicFunction": 0.5609756097560976,
|
| 461 |
+
"eval_f1_B-BiologicallyActiveSubstance": 0.7381703470031545,
|
| 462 |
+
"eval_f1_B-BiomedicalOccupationOrDiscipline": 0,
|
| 463 |
+
"eval_f1_B-BodyPartOrganOrOrganComponent": 0.8024539877300614,
|
| 464 |
+
"eval_f1_B-Cell": 0.6495726495726496,
|
| 465 |
+
"eval_f1_B-CellComponent": 0.4528301886792453,
|
| 466 |
+
"eval_f1_B-CellFunction": 0.6236559139784946,
|
| 467 |
+
"eval_f1_B-CellOrMolecularDysfunction": 0.8195121951219514,
|
| 468 |
+
"eval_f1_B-Chemical": 0.40816326530612246,
|
| 469 |
+
"eval_f1_B-ClinicalAttribute": 0.5935828877005348,
|
| 470 |
+
"eval_f1_B-DiseaseOrSyndrome": 0.8841826604897419,
|
| 471 |
+
"eval_f1_B-EmbryonicStructure": 0,
|
| 472 |
+
"eval_f1_B-EnvironmentalEffectOfHumans": 0,
|
| 473 |
+
"eval_f1_B-Eukaryote": 0.43636363636363634,
|
| 474 |
+
"eval_f1_B-ExperimentalModelOfDisease": 0,
|
| 475 |
+
"eval_f1_B-Finding": 0.49000000000000005,
|
| 476 |
+
"eval_f1_B-GeneOrGenome": 0.18556701030927839,
|
| 477 |
+
"eval_f1_B-HealthCareActivity": 0.6595289079229123,
|
| 478 |
+
"eval_f1_B-HealthCareRelatedOrganization": 0,
|
| 479 |
+
"eval_f1_B-IndividualBehavior": 0,
|
| 480 |
+
"eval_f1_B-InjuryOrPoisoning": 0,
|
| 481 |
+
"eval_f1_B-MachineActivity": 0,
|
| 482 |
+
"eval_f1_B-ManufacturedObject": 0,
|
| 483 |
+
"eval_f1_B-MolecularSequence": 0,
|
| 484 |
+
"eval_f1_B-NaturalPhenomenonOrProcess": 0,
|
| 485 |
+
"eval_f1_B-NucleicAcidNucleosideOrNucleotide": 0.4736842105263158,
|
| 486 |
+
"eval_f1_B-Organism": 0,
|
| 487 |
+
"eval_f1_B-OrganismAttribute": 0,
|
| 488 |
+
"eval_f1_B-PathologicFunction": 0.6397849462365591,
|
| 489 |
+
"eval_f1_B-PatientOrDisabledGroup": 0.9752066115702479,
|
| 490 |
+
"eval_f1_B-PharmacologicSubstance": 0.5287356321839081,
|
| 491 |
+
"eval_f1_B-PopulationGroup": 0.7832167832167832,
|
| 492 |
+
"eval_f1_B-ResearchActivity": 0.6884328358208956,
|
| 493 |
+
"eval_f1_B-SignOrSymptom": 0,
|
| 494 |
+
"eval_f1_B-Substance": 0,
|
| 495 |
+
"eval_f1_B-TemporalConcept": 0.7789799072642967,
|
| 496 |
+
"eval_f1_B-Virus": 0,
|
| 497 |
+
"eval_f1_I-AminoAcidPeptideOrProtein": 0.7602792862684251,
|
| 498 |
+
"eval_f1_I-AnatomicalAbnormality": 0,
|
| 499 |
+
"eval_f1_I-Bacterium": 0,
|
| 500 |
+
"eval_f1_I-BiologicFunction": 0.5947368421052632,
|
| 501 |
+
"eval_f1_I-BiologicallyActiveSubstance": 0.7702952029520296,
|
| 502 |
+
"eval_f1_I-BiomedicalOccupationOrDiscipline": 0,
|
| 503 |
+
"eval_f1_I-BodyPartOrganOrOrganComponent": 0.8607594936708861,
|
| 504 |
+
"eval_f1_I-Cell": 0.7323232323232323,
|
| 505 |
+
"eval_f1_I-CellComponent": 0.6049382716049383,
|
| 506 |
+
"eval_f1_I-CellFunction": 0.6057692307692308,
|
| 507 |
+
"eval_f1_I-CellOrMolecularDysfunction": 0.8269858541893362,
|
| 508 |
+
"eval_f1_I-Chemical": 0.6285714285714286,
|
| 509 |
+
"eval_f1_I-ClinicalAttribute": 0.6146179401993357,
|
| 510 |
+
"eval_f1_I-DiseaseOrSyndrome": 0.9010507880910683,
|
| 511 |
+
"eval_f1_I-EmbryonicStructure": 0,
|
| 512 |
+
"eval_f1_I-EnvironmentalEffectOfHumans": 0,
|
| 513 |
+
"eval_f1_I-Eukaryote": 0,
|
| 514 |
+
"eval_f1_I-ExperimentalModelOfDisease": 0.6222222222222223,
|
| 515 |
+
"eval_f1_I-Finding": 0.32786885245901637,
|
| 516 |
+
"eval_f1_I-GeneOrGenome": 0.40771349862258954,
|
| 517 |
+
"eval_f1_I-HealthCareActivity": 0.6754551161330823,
|
| 518 |
+
"eval_f1_I-HealthCareRelatedOrganization": 0,
|
| 519 |
+
"eval_f1_I-IndividualBehavior": 0,
|
| 520 |
+
"eval_f1_I-InjuryOrPoisoning": 0,
|
| 521 |
+
"eval_f1_I-MachineActivity": 0,
|
| 522 |
+
"eval_f1_I-ManufacturedObject": 0,
|
| 523 |
+
"eval_f1_I-MolecularSequence": 0,
|
| 524 |
+
"eval_f1_I-NaturalPhenomenonOrProcess": 0,
|
| 525 |
+
"eval_f1_I-NucleicAcidNucleosideOrNucleotide": 0.9285714285714286,
|
| 526 |
+
"eval_f1_I-Organism": 0,
|
| 527 |
+
"eval_f1_I-OrganismAttribute": 0,
|
| 528 |
+
"eval_f1_I-PathologicFunction": 0.7263922518159805,
|
| 529 |
+
"eval_f1_I-PatientOrDisabledGroup": 0,
|
| 530 |
+
"eval_f1_I-PharmacologicSubstance": 0.7155963302752294,
|
| 531 |
+
"eval_f1_I-PopulationGroup": 0,
|
| 532 |
+
"eval_f1_I-ResearchActivity": 0.6251768033946252,
|
| 533 |
+
"eval_f1_I-SignOrSymptom": 0,
|
| 534 |
+
"eval_f1_I-Substance": 0,
|
| 535 |
+
"eval_f1_I-TemporalConcept": 0.44311377245508987,
|
| 536 |
+
"eval_f1_I-Virus": 0,
|
| 537 |
+
"eval_loss": 0.001518598641268909,
|
| 538 |
+
"eval_macro_f1": 0.341407570012686,
|
| 539 |
+
"eval_runtime": 51.8047,
|
| 540 |
+
"eval_samples_per_second": 15.346,
|
| 541 |
+
"eval_steps_per_second": 0.309,
|
| 542 |
+
"step": 672
|
| 543 |
+
},
|
| 544 |
+
{
|
| 545 |
+
"epoch": 7.0,
|
| 546 |
+
"eval_f1_B-AminoAcidPeptideOrProtein": 0.7625698324022347,
|
| 547 |
+
"eval_f1_B-AnatomicalAbnormality": 0,
|
| 548 |
+
"eval_f1_B-Bacterium": 0,
|
| 549 |
+
"eval_f1_B-BiologicFunction": 0.6334841628959276,
|
| 550 |
+
"eval_f1_B-BiologicallyActiveSubstance": 0.73125,
|
| 551 |
+
"eval_f1_B-BiomedicalOccupationOrDiscipline": 0,
|
| 552 |
+
"eval_f1_B-BodyPartOrganOrOrganComponent": 0.7892813641900122,
|
| 553 |
+
"eval_f1_B-Cell": 0.6578947368421052,
|
| 554 |
+
"eval_f1_B-CellComponent": 0.32786885245901637,
|
| 555 |
+
"eval_f1_B-CellFunction": 0.6623376623376623,
|
| 556 |
+
"eval_f1_B-CellOrMolecularDysfunction": 0.8347826086956521,
|
| 557 |
+
"eval_f1_B-Chemical": 0.4134078212290503,
|
| 558 |
+
"eval_f1_B-ClinicalAttribute": 0.6517412935323383,
|
| 559 |
+
"eval_f1_B-DiseaseOrSyndrome": 0.8814913448735019,
|
| 560 |
+
"eval_f1_B-EmbryonicStructure": 0,
|
| 561 |
+
"eval_f1_B-EnvironmentalEffectOfHumans": 0,
|
| 562 |
+
"eval_f1_B-Eukaryote": 0.4067796610169491,
|
| 563 |
+
"eval_f1_B-ExperimentalModelOfDisease": 0,
|
| 564 |
+
"eval_f1_B-Finding": 0.5482123510292525,
|
| 565 |
+
"eval_f1_B-GeneOrGenome": 0.2857142857142857,
|
| 566 |
+
"eval_f1_B-HealthCareActivity": 0.6679802955665025,
|
| 567 |
+
"eval_f1_B-HealthCareRelatedOrganization": 0,
|
| 568 |
+
"eval_f1_B-IndividualBehavior": 0,
|
| 569 |
+
"eval_f1_B-InjuryOrPoisoning": 0.03773584905660377,
|
| 570 |
+
"eval_f1_B-MachineActivity": 0,
|
| 571 |
+
"eval_f1_B-ManufacturedObject": 0,
|
| 572 |
+
"eval_f1_B-MolecularSequence": 0,
|
| 573 |
+
"eval_f1_B-NaturalPhenomenonOrProcess": 0,
|
| 574 |
+
"eval_f1_B-NucleicAcidNucleosideOrNucleotide": 0.6190476190476191,
|
| 575 |
+
"eval_f1_B-Organism": 0,
|
| 576 |
+
"eval_f1_B-OrganismAttribute": 0.29213483146067415,
|
| 577 |
+
"eval_f1_B-PathologicFunction": 0.6875,
|
| 578 |
+
"eval_f1_B-PatientOrDisabledGroup": 0.9752066115702479,
|
| 579 |
+
"eval_f1_B-PharmacologicSubstance": 0.6434782608695652,
|
| 580 |
+
"eval_f1_B-PopulationGroup": 0.8122270742358079,
|
| 581 |
+
"eval_f1_B-ResearchActivity": 0.7167999999999999,
|
| 582 |
+
"eval_f1_B-SignOrSymptom": 0,
|
| 583 |
+
"eval_f1_B-Substance": 0,
|
| 584 |
+
"eval_f1_B-TemporalConcept": 0.8110599078341013,
|
| 585 |
+
"eval_f1_B-Virus": 0,
|
| 586 |
+
"eval_f1_I-AminoAcidPeptideOrProtein": 0.7535362194599228,
|
| 587 |
+
"eval_f1_I-AnatomicalAbnormality": 0,
|
| 588 |
+
"eval_f1_I-Bacterium": 0,
|
| 589 |
+
"eval_f1_I-BiologicFunction": 0.6212121212121212,
|
| 590 |
+
"eval_f1_I-BiologicallyActiveSubstance": 0.7687687687687689,
|
| 591 |
+
"eval_f1_I-BiomedicalOccupationOrDiscipline": 0,
|
| 592 |
+
"eval_f1_I-BodyPartOrganOrOrganComponent": 0.8522522522522523,
|
| 593 |
+
"eval_f1_I-Cell": 0.7425474254742549,
|
| 594 |
+
"eval_f1_I-CellComponent": 0.327683615819209,
|
| 595 |
+
"eval_f1_I-CellFunction": 0.6357894736842105,
|
| 596 |
+
"eval_f1_I-CellOrMolecularDysfunction": 0.8048533872598583,
|
| 597 |
+
"eval_f1_I-Chemical": 0.5950920245398773,
|
| 598 |
+
"eval_f1_I-ClinicalAttribute": 0.6862123613312203,
|
| 599 |
+
"eval_f1_I-DiseaseOrSyndrome": 0.8977347701781394,
|
| 600 |
+
"eval_f1_I-EmbryonicStructure": 0,
|
| 601 |
+
"eval_f1_I-EnvironmentalEffectOfHumans": 0,
|
| 602 |
+
"eval_f1_I-Eukaryote": 0.08823529411764706,
|
| 603 |
+
"eval_f1_I-ExperimentalModelOfDisease": 0.7339449541284404,
|
| 604 |
+
"eval_f1_I-Finding": 0.5323910482921084,
|
| 605 |
+
"eval_f1_I-GeneOrGenome": 0.4517766497461929,
|
| 606 |
+
"eval_f1_I-HealthCareActivity": 0.6743902439024391,
|
| 607 |
+
"eval_f1_I-HealthCareRelatedOrganization": 0,
|
| 608 |
+
"eval_f1_I-IndividualBehavior": 0,
|
| 609 |
+
"eval_f1_I-InjuryOrPoisoning": 0,
|
| 610 |
+
"eval_f1_I-MachineActivity": 0,
|
| 611 |
+
"eval_f1_I-ManufacturedObject": 0,
|
| 612 |
+
"eval_f1_I-MolecularSequence": 0,
|
| 613 |
+
"eval_f1_I-NaturalPhenomenonOrProcess": 0,
|
| 614 |
+
"eval_f1_I-NucleicAcidNucleosideOrNucleotide": 0.9285714285714286,
|
| 615 |
+
"eval_f1_I-Organism": 0,
|
| 616 |
+
"eval_f1_I-OrganismAttribute": 0,
|
| 617 |
+
"eval_f1_I-PathologicFunction": 0.7549668874172186,
|
| 618 |
+
"eval_f1_I-PatientOrDisabledGroup": 0,
|
| 619 |
+
"eval_f1_I-PharmacologicSubstance": 0.7534883720930232,
|
| 620 |
+
"eval_f1_I-PopulationGroup": 0.5619047619047619,
|
| 621 |
+
"eval_f1_I-ResearchActivity": 0.6254826254826256,
|
| 622 |
+
"eval_f1_I-SignOrSymptom": 0.3934426229508197,
|
| 623 |
+
"eval_f1_I-Substance": 0,
|
| 624 |
+
"eval_f1_I-TemporalConcept": 0.7012987012987013,
|
| 625 |
+
"eval_f1_I-Virus": 0,
|
| 626 |
+
"eval_loss": 0.0014391897711902857,
|
| 627 |
+
"eval_macro_f1": 0.37169453045930434,
|
| 628 |
+
"eval_runtime": 51.5488,
|
| 629 |
+
"eval_samples_per_second": 15.422,
|
| 630 |
+
"eval_steps_per_second": 0.31,
|
| 631 |
+
"step": 784
|
| 632 |
+
},
|
| 633 |
+
{
|
| 634 |
+
"epoch": 8.0,
|
| 635 |
+
"eval_f1_B-AminoAcidPeptideOrProtein": 0.7616438356164383,
|
| 636 |
+
"eval_f1_B-AnatomicalAbnormality": 0,
|
| 637 |
+
"eval_f1_B-Bacterium": 0,
|
| 638 |
+
"eval_f1_B-BiologicFunction": 0.6434782608695652,
|
| 639 |
+
"eval_f1_B-BiologicallyActiveSubstance": 0.7304075235109718,
|
| 640 |
+
"eval_f1_B-BiomedicalOccupationOrDiscipline": 0,
|
| 641 |
+
"eval_f1_B-BodyPartOrganOrOrganComponent": 0.8159203980099503,
|
| 642 |
+
"eval_f1_B-Cell": 0.6283185840707963,
|
| 643 |
+
"eval_f1_B-CellComponent": 0.41269841269841273,
|
| 644 |
+
"eval_f1_B-CellFunction": 0.6843657817109144,
|
| 645 |
+
"eval_f1_B-CellOrMolecularDysfunction": 0.8053097345132744,
|
| 646 |
+
"eval_f1_B-Chemical": 0.3819095477386935,
|
| 647 |
+
"eval_f1_B-ClinicalAttribute": 0.6459948320413436,
|
| 648 |
+
"eval_f1_B-DiseaseOrSyndrome": 0.8986301369863015,
|
| 649 |
+
"eval_f1_B-EmbryonicStructure": 0,
|
| 650 |
+
"eval_f1_B-EnvironmentalEffectOfHumans": 0,
|
| 651 |
+
"eval_f1_B-Eukaryote": 0.39999999999999997,
|
| 652 |
+
"eval_f1_B-ExperimentalModelOfDisease": 0.33333333333333337,
|
| 653 |
+
"eval_f1_B-Finding": 0.5669291338582677,
|
| 654 |
+
"eval_f1_B-GeneOrGenome": 0.2898550724637681,
|
| 655 |
+
"eval_f1_B-HealthCareActivity": 0.6990496304118269,
|
| 656 |
+
"eval_f1_B-HealthCareRelatedOrganization": 0,
|
| 657 |
+
"eval_f1_B-IndividualBehavior": 0,
|
| 658 |
+
"eval_f1_B-InjuryOrPoisoning": 0.31746031746031744,
|
| 659 |
+
"eval_f1_B-MachineActivity": 0,
|
| 660 |
+
"eval_f1_B-ManufacturedObject": 0,
|
| 661 |
+
"eval_f1_B-MolecularSequence": 0,
|
| 662 |
+
"eval_f1_B-NaturalPhenomenonOrProcess": 0,
|
| 663 |
+
"eval_f1_B-NucleicAcidNucleosideOrNucleotide": 0.6190476190476191,
|
| 664 |
+
"eval_f1_B-Organism": 0,
|
| 665 |
+
"eval_f1_B-OrganismAttribute": 0.6776859504132231,
|
| 666 |
+
"eval_f1_B-PathologicFunction": 0.6909090909090909,
|
| 667 |
+
"eval_f1_B-PatientOrDisabledGroup": 0.96875,
|
| 668 |
+
"eval_f1_B-PharmacologicSubstance": 0.6666666666666667,
|
| 669 |
+
"eval_f1_B-PopulationGroup": 0.8423236514522822,
|
| 670 |
+
"eval_f1_B-ResearchActivity": 0.6822066822066822,
|
| 671 |
+
"eval_f1_B-SignOrSymptom": 0,
|
| 672 |
+
"eval_f1_B-Substance": 0,
|
| 673 |
+
"eval_f1_B-TemporalConcept": 0.8258064516129032,
|
| 674 |
+
"eval_f1_B-Virus": 0,
|
| 675 |
+
"eval_f1_I-AminoAcidPeptideOrProtein": 0.7221764220939818,
|
| 676 |
+
"eval_f1_I-AnatomicalAbnormality": 0,
|
| 677 |
+
"eval_f1_I-Bacterium": 0,
|
| 678 |
+
"eval_f1_I-BiologicFunction": 0.5761124121779859,
|
| 679 |
+
"eval_f1_I-BiologicallyActiveSubstance": 0.7689282202556538,
|
| 680 |
+
"eval_f1_I-BiomedicalOccupationOrDiscipline": 0,
|
| 681 |
+
"eval_f1_I-BodyPartOrganOrOrganComponent": 0.8522829006266787,
|
| 682 |
+
"eval_f1_I-Cell": 0.7440633245382585,
|
| 683 |
+
"eval_f1_I-CellComponent": 0.5291005291005291,
|
| 684 |
+
"eval_f1_I-CellFunction": 0.6115107913669064,
|
| 685 |
+
"eval_f1_I-CellOrMolecularDysfunction": 0.8225469728601253,
|
| 686 |
+
"eval_f1_I-Chemical": 0.5133689839572194,
|
| 687 |
+
"eval_f1_I-ClinicalAttribute": 0.6720779220779222,
|
| 688 |
+
"eval_f1_I-DiseaseOrSyndrome": 0.9203865623561897,
|
| 689 |
+
"eval_f1_I-EmbryonicStructure": 0,
|
| 690 |
+
"eval_f1_I-EnvironmentalEffectOfHumans": 0,
|
| 691 |
+
"eval_f1_I-Eukaryote": 0.12949640287769784,
|
| 692 |
+
"eval_f1_I-ExperimentalModelOfDisease": 0.6851851851851852,
|
| 693 |
+
"eval_f1_I-Finding": 0.517051705170517,
|
| 694 |
+
"eval_f1_I-GeneOrGenome": 0.457002457002457,
|
| 695 |
+
"eval_f1_I-HealthCareActivity": 0.7150127226463104,
|
| 696 |
+
"eval_f1_I-HealthCareRelatedOrganization": 0.027027027027027025,
|
| 697 |
+
"eval_f1_I-IndividualBehavior": 0,
|
| 698 |
+
"eval_f1_I-InjuryOrPoisoning": 0.36065573770491804,
|
| 699 |
+
"eval_f1_I-MachineActivity": 0,
|
| 700 |
+
"eval_f1_I-ManufacturedObject": 0.2666666666666666,
|
| 701 |
+
"eval_f1_I-MolecularSequence": 0,
|
| 702 |
+
"eval_f1_I-NaturalPhenomenonOrProcess": 0,
|
| 703 |
+
"eval_f1_I-NucleicAcidNucleosideOrNucleotide": 0.912280701754386,
|
| 704 |
+
"eval_f1_I-Organism": 0,
|
| 705 |
+
"eval_f1_I-OrganismAttribute": 0.4186046511627908,
|
| 706 |
+
"eval_f1_I-PathologicFunction": 0.7758620689655172,
|
| 707 |
+
"eval_f1_I-PatientOrDisabledGroup": 0.3333333333333333,
|
| 708 |
+
"eval_f1_I-PharmacologicSubstance": 0.5945945945945946,
|
| 709 |
+
"eval_f1_I-PopulationGroup": 0.7251908396946565,
|
| 710 |
+
"eval_f1_I-ResearchActivity": 0.6251415628539072,
|
| 711 |
+
"eval_f1_I-SignOrSymptom": 0.46376811594202905,
|
| 712 |
+
"eval_f1_I-Substance": 0,
|
| 713 |
+
"eval_f1_I-TemporalConcept": 0.7629629629629631,
|
| 714 |
+
"eval_f1_I-Virus": 0,
|
| 715 |
+
"eval_loss": 0.0013897038297727704,
|
| 716 |
+
"eval_macro_f1": 0.4061386553069881,
|
| 717 |
+
"eval_runtime": 51.2581,
|
| 718 |
+
"eval_samples_per_second": 15.51,
|
| 719 |
+
"eval_steps_per_second": 0.312,
|
| 720 |
+
"step": 896
|
| 721 |
+
},
|
| 722 |
+
{
|
| 723 |
+
"epoch": 8.93,
|
| 724 |
+
"learning_rate": 0.0001755952380952381,
|
| 725 |
+
"loss": 0.0076,
|
| 726 |
+
"step": 1000
|
| 727 |
+
},
|
| 728 |
+
{
|
| 729 |
+
"epoch": 9.0,
|
| 730 |
+
"eval_f1_B-AminoAcidPeptideOrProtein": 0.7896995708154506,
|
| 731 |
+
"eval_f1_B-AnatomicalAbnormality": 0,
|
| 732 |
+
"eval_f1_B-Bacterium": 0,
|
| 733 |
+
"eval_f1_B-BiologicFunction": 0.6022988505747128,
|
| 734 |
+
"eval_f1_B-BiologicallyActiveSubstance": 0.722495894909688,
|
| 735 |
+
"eval_f1_B-BiomedicalOccupationOrDiscipline": 0,
|
| 736 |
+
"eval_f1_B-BodyPartOrganOrOrganComponent": 0.8019801980198019,
|
| 737 |
+
"eval_f1_B-Cell": 0.6403508771929826,
|
| 738 |
+
"eval_f1_B-CellComponent": 0.40816326530612246,
|
| 739 |
+
"eval_f1_B-CellFunction": 0.7005988023952097,
|
| 740 |
+
"eval_f1_B-CellOrMolecularDysfunction": 0.8138528138528137,
|
| 741 |
+
"eval_f1_B-Chemical": 0.3809523809523809,
|
| 742 |
+
"eval_f1_B-ClinicalAttribute": 0.6548223350253807,
|
| 743 |
+
"eval_f1_B-DiseaseOrSyndrome": 0.8850033624747815,
|
| 744 |
+
"eval_f1_B-EmbryonicStructure": 0,
|
| 745 |
+
"eval_f1_B-EnvironmentalEffectOfHumans": 0,
|
| 746 |
+
"eval_f1_B-Eukaryote": 0.4482758620689655,
|
| 747 |
+
"eval_f1_B-ExperimentalModelOfDisease": 0.5333333333333333,
|
| 748 |
+
"eval_f1_B-Finding": 0.5766590389016019,
|
| 749 |
+
"eval_f1_B-GeneOrGenome": 0.31724137931034485,
|
| 750 |
+
"eval_f1_B-HealthCareActivity": 0.6831683168316831,
|
| 751 |
+
"eval_f1_B-HealthCareRelatedOrganization": 0,
|
| 752 |
+
"eval_f1_B-IndividualBehavior": 0,
|
| 753 |
+
"eval_f1_B-InjuryOrPoisoning": 0.3636363636363636,
|
| 754 |
+
"eval_f1_B-MachineActivity": 0,
|
| 755 |
+
"eval_f1_B-ManufacturedObject": 0,
|
| 756 |
+
"eval_f1_B-MolecularSequence": 0,
|
| 757 |
+
"eval_f1_B-NaturalPhenomenonOrProcess": 0,
|
| 758 |
+
"eval_f1_B-NucleicAcidNucleosideOrNucleotide": 0.6190476190476191,
|
| 759 |
+
"eval_f1_B-Organism": 0,
|
| 760 |
+
"eval_f1_B-OrganismAttribute": 0.6495726495726496,
|
| 761 |
+
"eval_f1_B-PathologicFunction": 0.7000000000000001,
|
| 762 |
+
"eval_f1_B-PatientOrDisabledGroup": 0.975609756097561,
|
| 763 |
+
"eval_f1_B-PharmacologicSubstance": 0.7102803738317757,
|
| 764 |
+
"eval_f1_B-PopulationGroup": 0.8141592920353983,
|
| 765 |
+
"eval_f1_B-ResearchActivity": 0.7149240393208222,
|
| 766 |
+
"eval_f1_B-SignOrSymptom": 0,
|
| 767 |
+
"eval_f1_B-Substance": 0,
|
| 768 |
+
"eval_f1_B-TemporalConcept": 0.7765451664025356,
|
| 769 |
+
"eval_f1_B-Virus": 0,
|
| 770 |
+
"eval_f1_I-AminoAcidPeptideOrProtein": 0.7915543575920935,
|
| 771 |
+
"eval_f1_I-AnatomicalAbnormality": 0,
|
| 772 |
+
"eval_f1_I-Bacterium": 0,
|
| 773 |
+
"eval_f1_I-BiologicFunction": 0.5862068965517241,
|
| 774 |
+
"eval_f1_I-BiologicallyActiveSubstance": 0.7707168276563294,
|
| 775 |
+
"eval_f1_I-BiomedicalOccupationOrDiscipline": 0.038461538461538464,
|
| 776 |
+
"eval_f1_I-BodyPartOrganOrOrganComponent": 0.8460846084608462,
|
| 777 |
+
"eval_f1_I-Cell": 0.7428571428571429,
|
| 778 |
+
"eval_f1_I-CellComponent": 0.49673202614379086,
|
| 779 |
+
"eval_f1_I-CellFunction": 0.679920477137177,
|
| 780 |
+
"eval_f1_I-CellOrMolecularDysfunction": 0.827438370846731,
|
| 781 |
+
"eval_f1_I-Chemical": 0.5364431486880465,
|
| 782 |
+
"eval_f1_I-ClinicalAttribute": 0.6710310965630114,
|
| 783 |
+
"eval_f1_I-DiseaseOrSyndrome": 0.9028295678876946,
|
| 784 |
+
"eval_f1_I-EmbryonicStructure": 0,
|
| 785 |
+
"eval_f1_I-EnvironmentalEffectOfHumans": 0,
|
| 786 |
+
"eval_f1_I-Eukaryote": 0.128,
|
| 787 |
+
"eval_f1_I-ExperimentalModelOfDisease": 0.6846846846846847,
|
| 788 |
+
"eval_f1_I-Finding": 0.4860759493670886,
|
| 789 |
+
"eval_f1_I-GeneOrGenome": 0.4682926829268292,
|
| 790 |
+
"eval_f1_I-HealthCareActivity": 0.7051442910915935,
|
| 791 |
+
"eval_f1_I-HealthCareRelatedOrganization": 0.34782608695652173,
|
| 792 |
+
"eval_f1_I-IndividualBehavior": 0,
|
| 793 |
+
"eval_f1_I-InjuryOrPoisoning": 0.5467625899280575,
|
| 794 |
+
"eval_f1_I-MachineActivity": 0,
|
| 795 |
+
"eval_f1_I-ManufacturedObject": 0,
|
| 796 |
+
"eval_f1_I-MolecularSequence": 0,
|
| 797 |
+
"eval_f1_I-NaturalPhenomenonOrProcess": 0,
|
| 798 |
+
"eval_f1_I-NucleicAcidNucleosideOrNucleotide": 0.9285714285714286,
|
| 799 |
+
"eval_f1_I-Organism": 0,
|
| 800 |
+
"eval_f1_I-OrganismAttribute": 0.38095238095238093,
|
| 801 |
+
"eval_f1_I-PathologicFunction": 0.7104984093319193,
|
| 802 |
+
"eval_f1_I-PatientOrDisabledGroup": 0.375,
|
| 803 |
+
"eval_f1_I-PharmacologicSubstance": 0.7162790697674418,
|
| 804 |
+
"eval_f1_I-PopulationGroup": 0.7053941908713695,
|
| 805 |
+
"eval_f1_I-ResearchActivity": 0.6499302649930265,
|
| 806 |
+
"eval_f1_I-SignOrSymptom": 0.3589743589743589,
|
| 807 |
+
"eval_f1_I-Substance": 0,
|
| 808 |
+
"eval_f1_I-TemporalConcept": 0.714828897338403,
|
| 809 |
+
"eval_f1_I-Virus": 0,
|
| 810 |
+
"eval_loss": 0.0013047519605606794,
|
| 811 |
+
"eval_macro_f1": 0.41350203608139013,
|
| 812 |
+
"eval_runtime": 52.2588,
|
| 813 |
+
"eval_samples_per_second": 15.213,
|
| 814 |
+
"eval_steps_per_second": 0.306,
|
| 815 |
+
"step": 1008
|
| 816 |
+
},
|
| 817 |
+
{
|
| 818 |
+
"epoch": 10.0,
|
| 819 |
+
"eval_f1_B-AminoAcidPeptideOrProtein": 0.7736842105263159,
|
| 820 |
+
"eval_f1_B-AnatomicalAbnormality": 0,
|
| 821 |
+
"eval_f1_B-Bacterium": 0,
|
| 822 |
+
"eval_f1_B-BiologicFunction": 0.631818181818182,
|
| 823 |
+
"eval_f1_B-BiologicallyActiveSubstance": 0.727540500736377,
|
| 824 |
+
"eval_f1_B-BiomedicalOccupationOrDiscipline": 0.14634146341463414,
|
| 825 |
+
"eval_f1_B-BodyPartOrganOrOrganComponent": 0.8005018820577164,
|
| 826 |
+
"eval_f1_B-Cell": 0.6181818181818182,
|
| 827 |
+
"eval_f1_B-CellComponent": 0.24561403508771928,
|
| 828 |
+
"eval_f1_B-CellFunction": 0.7023809523809524,
|
| 829 |
+
"eval_f1_B-CellOrMolecularDysfunction": 0.8099173553719009,
|
| 830 |
+
"eval_f1_B-Chemical": 0.3905325443786982,
|
| 831 |
+
"eval_f1_B-ClinicalAttribute": 0.6795180722891567,
|
| 832 |
+
"eval_f1_B-DiseaseOrSyndrome": 0.869281045751634,
|
| 833 |
+
"eval_f1_B-EmbryonicStructure": 0,
|
| 834 |
+
"eval_f1_B-EnvironmentalEffectOfHumans": 0,
|
| 835 |
+
"eval_f1_B-Eukaryote": 0.4727272727272727,
|
| 836 |
+
"eval_f1_B-ExperimentalModelOfDisease": 0.33333333333333337,
|
| 837 |
+
"eval_f1_B-Finding": 0.5703200775945684,
|
| 838 |
+
"eval_f1_B-GeneOrGenome": 0.31884057971014496,
|
| 839 |
+
"eval_f1_B-HealthCareActivity": 0.7043650793650793,
|
| 840 |
+
"eval_f1_B-HealthCareRelatedOrganization": 0,
|
| 841 |
+
"eval_f1_B-IndividualBehavior": 0,
|
| 842 |
+
"eval_f1_B-InjuryOrPoisoning": 0.4109589041095891,
|
| 843 |
+
"eval_f1_B-MachineActivity": 0,
|
| 844 |
+
"eval_f1_B-ManufacturedObject": 0,
|
| 845 |
+
"eval_f1_B-MolecularSequence": 0,
|
| 846 |
+
"eval_f1_B-NaturalPhenomenonOrProcess": 0,
|
| 847 |
+
"eval_f1_B-NucleicAcidNucleosideOrNucleotide": 0.6190476190476191,
|
| 848 |
+
"eval_f1_B-Organism": 0,
|
| 849 |
+
"eval_f1_B-OrganismAttribute": 0.7552447552447553,
|
| 850 |
+
"eval_f1_B-PathologicFunction": 0.6780487804878048,
|
| 851 |
+
"eval_f1_B-PatientOrDisabledGroup": 0.959349593495935,
|
| 852 |
+
"eval_f1_B-PharmacologicSubstance": 0.689655172413793,
|
| 853 |
+
"eval_f1_B-PopulationGroup": 0.8191721132897604,
|
| 854 |
+
"eval_f1_B-ResearchActivity": 0.7175697865353038,
|
| 855 |
+
"eval_f1_B-SignOrSymptom": 0.3181818181818182,
|
| 856 |
+
"eval_f1_B-Substance": 0.2828282828282828,
|
| 857 |
+
"eval_f1_B-TemporalConcept": 0.8125,
|
| 858 |
+
"eval_f1_B-Virus": 0,
|
| 859 |
+
"eval_f1_I-AminoAcidPeptideOrProtein": 0.7658516369664319,
|
| 860 |
+
"eval_f1_I-AnatomicalAbnormality": 0,
|
| 861 |
+
"eval_f1_I-Bacterium": 0,
|
| 862 |
+
"eval_f1_I-BiologicFunction": 0.6456310679611651,
|
| 863 |
+
"eval_f1_I-BiologicallyActiveSubstance": 0.7740086000955565,
|
| 864 |
+
"eval_f1_I-BiomedicalOccupationOrDiscipline": 0.45714285714285713,
|
| 865 |
+
"eval_f1_I-BodyPartOrganOrOrganComponent": 0.854014598540146,
|
| 866 |
+
"eval_f1_I-Cell": 0.7336956521739131,
|
| 867 |
+
"eval_f1_I-CellComponent": 0.32394366197183094,
|
| 868 |
+
"eval_f1_I-CellFunction": 0.6140350877192983,
|
| 869 |
+
"eval_f1_I-CellOrMolecularDysfunction": 0.8288100208768266,
|
| 870 |
+
"eval_f1_I-Chemical": 0.5732484076433121,
|
| 871 |
+
"eval_f1_I-ClinicalAttribute": 0.6748466257668712,
|
| 872 |
+
"eval_f1_I-DiseaseOrSyndrome": 0.8821534548537515,
|
| 873 |
+
"eval_f1_I-EmbryonicStructure": 0,
|
| 874 |
+
"eval_f1_I-EnvironmentalEffectOfHumans": 0,
|
| 875 |
+
"eval_f1_I-Eukaryote": 0.14285714285714288,
|
| 876 |
+
"eval_f1_I-ExperimentalModelOfDisease": 0.6990291262135923,
|
| 877 |
+
"eval_f1_I-Finding": 0.49401523394994556,
|
| 878 |
+
"eval_f1_I-GeneOrGenome": 0.42159383033419023,
|
| 879 |
+
"eval_f1_I-HealthCareActivity": 0.705657978385251,
|
| 880 |
+
"eval_f1_I-HealthCareRelatedOrganization": 0.5043478260869564,
|
| 881 |
+
"eval_f1_I-IndividualBehavior": 0,
|
| 882 |
+
"eval_f1_I-InjuryOrPoisoning": 0.6408839779005524,
|
| 883 |
+
"eval_f1_I-MachineActivity": 0,
|
| 884 |
+
"eval_f1_I-ManufacturedObject": 0.1415929203539823,
|
| 885 |
+
"eval_f1_I-MolecularSequence": 0,
|
| 886 |
+
"eval_f1_I-NaturalPhenomenonOrProcess": 0,
|
| 887 |
+
"eval_f1_I-NucleicAcidNucleosideOrNucleotide": 0.9285714285714286,
|
| 888 |
+
"eval_f1_I-Organism": 0,
|
| 889 |
+
"eval_f1_I-OrganismAttribute": 0.3913043478260869,
|
| 890 |
+
"eval_f1_I-PathologicFunction": 0.7127659574468085,
|
| 891 |
+
"eval_f1_I-PatientOrDisabledGroup": 0.21428571428571425,
|
| 892 |
+
"eval_f1_I-PharmacologicSubstance": 0.7247706422018348,
|
| 893 |
+
"eval_f1_I-PopulationGroup": 0.7000000000000001,
|
| 894 |
+
"eval_f1_I-ResearchActivity": 0.6399456521739131,
|
| 895 |
+
"eval_f1_I-SignOrSymptom": 0.5714285714285713,
|
| 896 |
+
"eval_f1_I-Substance": 0.37647058823529417,
|
| 897 |
+
"eval_f1_I-TemporalConcept": 0.7292418772563177,
|
| 898 |
+
"eval_f1_I-Virus": 0,
|
| 899 |
+
"eval_loss": 0.0013118279166519642,
|
| 900 |
+
"eval_macro_f1": 0.4340449964697465,
|
| 901 |
+
"eval_runtime": 68.4789,
|
| 902 |
+
"eval_samples_per_second": 11.609,
|
| 903 |
+
"eval_steps_per_second": 0.234,
|
| 904 |
+
"step": 1120
|
| 905 |
+
}
|
| 906 |
+
],
|
| 907 |
+
"max_steps": 3360,
|
| 908 |
+
"num_train_epochs": 30,
|
| 909 |
+
"total_flos": 1.458554314881024e+16,
|
| 910 |
+
"trial_name": null,
|
| 911 |
+
"trial_params": null
|
| 912 |
+
}
|
training_args.bin
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:1a613c7a10febb5cbb3f55b96dc5fb8dfe2ce87ce77a82530d655775b3617e22
|
| 3 |
+
size 3515
|
vocab.txt
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|