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README.md
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# GeneJEPA — A Perceiver-style JEPA for scRNA-seq
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**GeneJEPA** is a Joint-Embedding Predictive Architecture (JEPA) trained for self-supervised representation learning on
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It uses a Perceiver-style encoder to handle sparse, high-dimensional gene count vectors and learns from masked block prediction
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---
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```python
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from huggingface_hub import hf_hub_download
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ckpt_path = hf_hub_download(repo_id="
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filename="genejepa-epoch=49.ckpt")
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meta_path = hf_hub_download(repo_id="
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filename="gene_metadata.parquet")
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stats_path = hf_hub_download(repo_id="
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filename="global_stats.json")
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```
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## Contact
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elonlit@biostate.ai
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# GeneJEPA — A Perceiver-style JEPA for scRNA-seq
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**GeneJEPA** is a Joint-Embedding Predictive Architecture (JEPA) trained for self-supervised representation learning on scRNA-seq.
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It uses a Perceiver-style encoder to handle sparse, high-dimensional gene count vectors and learns from masked block prediction.
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**Why?** Produce compact cell embeddings you can use for clustering, transfer learning, linear probes, and downstream biological tasks.
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---
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```python
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from huggingface_hub import hf_hub_download
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ckpt_path = hf_hub_download(repo_id="elonlit/GeneJEPA",
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filename="genejepa-epoch=49.ckpt")
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meta_path = hf_hub_download(repo_id="elonlit/GeneJEPA",
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filename="gene_metadata.parquet")
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stats_path = hf_hub_download(repo_id="elonlit/GeneJEPA",
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filename="global_stats.json")
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```
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## Contact
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elonlit@biostate.ai
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