hyperopt-gbt / benchmark_quick.py
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Complete benchmark_quick.py with 5 benchmark suites
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#!/usr/bin/env python3
"""
Quick benchmark: HyperOpt-GBT (Python) vs XGBoost vs LightGBM vs CatBoost
Runs on synthetic datasets to validate accuracy and speed of the core
innovations: GOSS, quantile sketch binning, and histogram-based splits.
Usage:
pip install hyperopt-gbt xgboost lightgbm catboost scikit-learn
python benchmark_quick.py
"""
import time
import warnings
import numpy as np
from sklearn.datasets import make_classification, make_regression
from sklearn.model_selection import train_test_split
from sklearn.metrics import roc_auc_score, root_mean_squared_error
warnings.filterwarnings("ignore")
# ── Helpers ──────────────────────────────────────────────────────────────────
def timer(func):
"""Time a callable, return (result, elapsed_seconds)."""
t0 = time.perf_counter()
result = func()
return result, time.perf_counter() - t0
def print_table(headers, rows):
"""Pretty-print a markdown-style table."""
widths = [max(len(h), max((len(str(r[i])) for r in rows), default=0))
for i, h in enumerate(headers)]
fmt = " | ".join(f"{{:<{w}}}" for w in widths)
sep = "-|-".join("-" * w for w in widths)
print(fmt.format(*headers))
print(sep)
for row in rows:
print(fmt.format(*[str(c) for c in row]))
print()
# ── Optional imports (graceful degradation) ──────────────────────────────────
def try_import(name):
try:
return __import__(name)
except ImportError:
return None
xgb = try_import("xgboost")
lgb = try_import("lightgbm")
cb = try_import("catboost")
# Always import our library
from hyperopt_gbt import HyperOptGradientBoostedClassifier, HyperOptGradientBoostedRegressor
# Try Rust backend
try:
import rust_gbt as rgbt
HAS_RUST = True
except ImportError:
HAS_RUST = False
# =============================================================================
# BENCHMARK 1: Large-scale binary classification
# =============================================================================
def benchmark_classification(n_train=80_000, n_test=20_000, n_features=30,
n_trees=50, seed=42):
print("=" * 72)
print(f"BENCHMARK 1: Binary Classification ({n_train:,} train / {n_test:,} test / "
f"{n_features} features / {n_trees} trees)")
print("=" * 72)
rng = np.random.RandomState(seed)
# Nonlinear synthetic data
X = rng.randn(n_train + n_test, n_features)
signal = (X[:, 0] * X[:, 1]
+ np.sin(X[:, 2]) * 2
+ (X[:, 3] > 0).astype(float) * 1.5
+ rng.randn(n_train + n_test) * 0.5)
y = (signal > np.median(signal)).astype(float)
X_train, X_test = X[:n_train], X[n_train:]
y_train, y_test = y[:n_train], y[n_train:]
rows = []
# ── HyperOpt-GBT (Python, GOSS) ─────────────────────────────────────────
clf = HyperOptGradientBoostedClassifier(
n_estimators=n_trees, learning_rate=0.1, max_depth=6,
use_goss=True, goss_a=0.2, goss_b=0.1,
n_bins=255, binning="uniform", random_state=seed,
)
_, train_time = timer(lambda: clf.fit(X_train, y_train))
proba, pred_time = timer(lambda: clf.predict_proba(X_test)[:, 1])
auc = roc_auc_score(y_test, proba)
rows.append(["HyperOpt-GBT (GOSS)", f"{auc:.4f}", f"{train_time:.2f}s", f"{pred_time*1e3:.0f}ms"])
# ── HyperOpt-GBT (Python, no GOSS) ──────────────────────────────────────
clf2 = HyperOptGradientBoostedClassifier(
n_estimators=n_trees, learning_rate=0.1, max_depth=6,
use_goss=False, n_bins=255, binning="uniform", random_state=seed,
)
_, train_time = timer(lambda: clf2.fit(X_train, y_train))
proba2, pred_time = timer(lambda: clf2.predict_proba(X_test)[:, 1])
auc2 = roc_auc_score(y_test, proba2)
rows.append(["HyperOpt-GBT (no GOSS)", f"{auc2:.4f}", f"{train_time:.2f}s", f"{pred_time*1e3:.0f}ms"])
# ── HyperOpt-GBT (quantile sketch) ──────────────────────────────────────
clf3 = HyperOptGradientBoostedClassifier(
n_estimators=n_trees, learning_rate=0.1, max_depth=6,
use_goss=True, goss_a=0.2, goss_b=0.1,
n_bins=255, binning="quantile_sketch", random_state=seed,
)
_, train_time = timer(lambda: clf3.fit(X_train, y_train))
proba3, pred_time = timer(lambda: clf3.predict_proba(X_test)[:, 1])
auc3 = roc_auc_score(y_test, proba3)
rows.append(["HyperOpt-GBT (quantile)", f"{auc3:.4f}", f"{train_time:.2f}s", f"{pred_time*1e3:.0f}ms"])
# ── Rust backend ─────────────────────────────────────────────────────────
if HAS_RUST:
model = rgbt.PyRustGBT()
_, train_time = timer(lambda: model.fit(
X_train, y_train, n_estimators=n_trees, learning_rate=0.1,
max_depth=6, n_bins=255, use_goss=True, goss_a=0.2, goss_b=0.1,
task="classification", verbose=False,
))
proba_r, pred_time = timer(lambda: model.predict_proba(X_test))
auc_r = roc_auc_score(y_test, np.asarray(proba_r))
rows.append(["Rust-GBT (GOSS)", f"{auc_r:.4f}", f"{train_time:.2f}s", f"{pred_time*1e3:.0f}ms"])
# ── XGBoost ──────────────────────────────────────────────────────────────
if xgb:
xgb_clf = xgb.XGBClassifier(
n_estimators=n_trees, learning_rate=0.1, max_depth=6,
tree_method="hist", random_state=seed, verbosity=0,
)
_, train_time = timer(lambda: xgb_clf.fit(X_train, y_train))
proba_x, pred_time = timer(lambda: xgb_clf.predict_proba(X_test)[:, 1])
auc_x = roc_auc_score(y_test, proba_x)
rows.append(["XGBoost (hist)", f"{auc_x:.4f}", f"{train_time:.2f}s", f"{pred_time*1e3:.0f}ms"])
# ── LightGBM ─────────────────────────────────────────────────────────────
if lgb:
lgb_clf = lgb.LGBMClassifier(
n_estimators=n_trees, learning_rate=0.1, max_depth=6,
random_state=seed, verbose=-1,
)
_, train_time = timer(lambda: lgb_clf.fit(X_train, y_train))
proba_l, pred_time = timer(lambda: lgb_clf.predict_proba(X_test)[:, 1])
auc_l = roc_auc_score(y_test, proba_l)
rows.append(["LightGBM", f"{auc_l:.4f}", f"{train_time:.2f}s", f"{pred_time*1e3:.0f}ms"])
# ── CatBoost ─────────────────────────────────────────────────────────────
if cb:
cb_clf = cb.CatBoostClassifier(
iterations=n_trees, learning_rate=0.1, depth=6,
random_seed=seed, verbose=0,
)
_, train_time = timer(lambda: cb_clf.fit(X_train, y_train))
proba_c, pred_time = timer(lambda: cb_clf.predict_proba(X_test)[:, 1])
auc_c = roc_auc_score(y_test, proba_c)
rows.append(["CatBoost", f"{auc_c:.4f}", f"{train_time:.2f}s", f"{pred_time*1e3:.0f}ms"])
print()
print_table(["Library", "AUC", "Train Time", "Predict Time"], rows)
# =============================================================================
# BENCHMARK 2: GOSS ablation
# =============================================================================
def benchmark_goss_ablation(n_train=80_000, n_test=20_000, n_features=30,
n_trees=50, seed=42):
print("=" * 72)
print("BENCHMARK 2: GOSS Ablation")
print("=" * 72)
rng = np.random.RandomState(seed)
X = rng.randn(n_train + n_test, n_features)
signal = (X[:, 0] * X[:, 1]
+ np.sin(X[:, 2]) * 2
+ (X[:, 3] > 0).astype(float) * 1.5
+ rng.randn(n_train + n_test) * 0.5)
y = (signal > np.median(signal)).astype(float)
X_train, X_test = X[:n_train], X[n_train:]
y_train, y_test = y[:n_train], y[n_train:]
configs = [
("Full data (no GOSS)", False, 0.0, 0.0, "100%"),
("GOSS a=0.3, b=0.1", True, 0.3, 0.1, "40%"),
("GOSS a=0.2, b=0.1", True, 0.2, 0.1, "30%"),
("GOSS a=0.1, b=0.05", True, 0.1, 0.05, "15%"),
]
baseline_time = None
rows = []
for name, use_goss, a, b, data_pct in configs:
clf = HyperOptGradientBoostedClassifier(
n_estimators=n_trees, learning_rate=0.1, max_depth=6,
use_goss=use_goss, goss_a=a, goss_b=b,
n_bins=255, random_state=seed,
)
_, train_time = timer(lambda: clf.fit(X_train, y_train))
proba = clf.predict_proba(X_test)[:, 1]
auc = roc_auc_score(y_test, proba)
if baseline_time is None:
baseline_time = train_time
speedup = baseline_time / train_time if train_time > 0 else float("inf")
rows.append([name, data_pct, f"{auc:.4f}", f"{train_time:.2f}s", f"{speedup:.1f}x"])
print()
print_table(["Configuration", "Data Used", "AUC", "Train Time", "Speedup"], rows)
# =============================================================================
# BENCHMARK 3: Quantile sketch vs uniform on skewed data
# =============================================================================
def benchmark_quantile_sketch(n_train=40_000, n_test=10_000, n_trees=50, seed=42):
print("=" * 72)
print("BENCHMARK 3: Quantile Sketch vs Uniform Binning (Skewed Data)")
print("=" * 72)
rng = np.random.RandomState(seed)
n_total = n_train + n_test
n_features = 10
# Create highly skewed features: 85% in [0, 0.5], 15% outliers at ~50-100
X = np.zeros((n_total, n_features))
for f in range(n_features):
mask = rng.rand(n_total) < 0.85
X[mask, f] = rng.exponential(0.1, mask.sum())
X[~mask, f] = rng.uniform(50, 100, (~mask).sum())
# Target depends on the dense region
signal = X[:, 0] * 3 + np.sin(X[:, 1] * 10) + (X[:, 2] > 0.3).astype(float) * 2
y = (signal > np.median(signal)).astype(float)
X_train, X_test = X[:n_train], X[n_train:]
y_train, y_test = y[:n_train], y[n_train:]
rows = []
for n_bins in [31, 63, 127, 255]:
# Uniform
clf_u = HyperOptGradientBoostedClassifier(
n_estimators=n_trees, learning_rate=0.1, max_depth=6,
n_bins=n_bins, binning="uniform", use_goss=False, random_state=seed,
)
clf_u.fit(X_train, y_train)
auc_u = roc_auc_score(y_test, clf_u.predict_proba(X_test)[:, 1])
# Quantile sketch
clf_q = HyperOptGradientBoostedClassifier(
n_estimators=n_trees, learning_rate=0.1, max_depth=6,
n_bins=n_bins, binning="quantile_sketch", use_goss=False, random_state=seed,
)
clf_q.fit(X_train, y_train)
auc_q = roc_auc_score(y_test, clf_q.predict_proba(X_test)[:, 1])
gain = auc_q - auc_u
rows.append([str(n_bins), f"{auc_u:.4f}", f"{auc_q:.4f}", f"+{gain:.4f}"])
print()
print_table(["Bins", "Uniform AUC", "Quantile AUC", "Gain"], rows)
# =============================================================================
# BENCHMARK 4: Regression (California Housing style)
# =============================================================================
def benchmark_regression(n_train=20_000, n_test=5_000, n_features=8,
n_trees=100, seed=42):
print("=" * 72)
print(f"BENCHMARK 4: Regression ({n_train:,} train / {n_test:,} test)")
print("=" * 72)
X, y = make_regression(
n_samples=n_train + n_test,
n_features=n_features,
n_informative=6,
noise=10.0,
random_state=seed,
)
X_train, X_test, y_train, y_test = train_test_split(
X, y, test_size=n_test, random_state=seed
)
rows = []
# HyperOpt-GBT
reg = HyperOptGradientBoostedRegressor(
n_estimators=n_trees, learning_rate=0.1, max_depth=6,
use_goss=True, goss_a=0.2, goss_b=0.1,
n_bins=255, random_state=seed,
)
_, train_time = timer(lambda: reg.fit(X_train, y_train))
pred, pred_time = timer(lambda: reg.predict(X_test))
rmse = root_mean_squared_error(y_test, pred)
rows.append(["HyperOpt-GBT (GOSS)", f"{rmse:.2f}", f"{train_time:.2f}s", f"{pred_time*1e3:.0f}ms"])
# HyperOpt-GBT quantile
reg_q = HyperOptGradientBoostedRegressor(
n_estimators=n_trees, learning_rate=0.1, max_depth=6,
use_goss=True, goss_a=0.2, goss_b=0.1,
n_bins=255, binning="quantile_sketch", random_state=seed,
)
_, train_time = timer(lambda: reg_q.fit(X_train, y_train))
pred_q, pred_time = timer(lambda: reg_q.predict(X_test))
rmse_q = root_mean_squared_error(y_test, pred_q)
rows.append(["HyperOpt-GBT (quantile)", f"{rmse_q:.2f}", f"{train_time:.2f}s", f"{pred_time*1e3:.0f}ms"])
if xgb:
xgb_reg = xgb.XGBRegressor(
n_estimators=n_trees, learning_rate=0.1, max_depth=6,
tree_method="hist", random_state=seed, verbosity=0,
)
_, train_time = timer(lambda: xgb_reg.fit(X_train, y_train))
pred_x, pred_time = timer(lambda: xgb_reg.predict(X_test))
rmse_x = root_mean_squared_error(y_test, pred_x)
rows.append(["XGBoost", f"{rmse_x:.2f}", f"{train_time:.2f}s", f"{pred_time*1e3:.0f}ms"])
if lgb:
lgb_reg = lgb.LGBMRegressor(
n_estimators=n_trees, learning_rate=0.1, max_depth=6,
random_state=seed, verbose=-1,
)
_, train_time = timer(lambda: lgb_reg.fit(X_train, y_train))
pred_l, pred_time = timer(lambda: lgb_reg.predict(X_test))
rmse_l = root_mean_squared_error(y_test, pred_l)
rows.append(["LightGBM", f"{rmse_l:.2f}", f"{train_time:.2f}s", f"{pred_time*1e3:.0f}ms"])
if cb:
cb_reg = cb.CatBoostRegressor(
iterations=n_trees, learning_rate=0.1, depth=6,
random_seed=seed, verbose=0,
)
_, train_time = timer(lambda: cb_reg.fit(X_train, y_train))
pred_c, pred_time = timer(lambda: cb_reg.predict(X_test))
rmse_c = root_mean_squared_error(y_test, pred_c)
rows.append(["CatBoost", f"{rmse_c:.2f}", f"{train_time:.2f}s", f"{pred_time*1e3:.0f}ms"])
print()
print_table(["Library", "RMSE", "Train Time", "Predict Time"], rows)
# =============================================================================
# BENCHMARK 5: Inference engine comparison
# =============================================================================
def benchmark_inference_engines(n_train=20_000, n_test=50_000, n_trees=50, seed=42):
print("=" * 72)
print(f"BENCHMARK 5: Inference Engine Comparison ({n_test:,} test samples)")
print("=" * 72)
from hyperopt_gbt.inference import (
compile_inference_engine,
NaiveEngine,
FlatTreeEngine,
BatchedSIMDEngine,
QuickScorerEngine,
)
rng = np.random.RandomState(seed)
X = rng.randn(n_train + n_test, 20)
signal = X[:, 0] * X[:, 1] + np.sin(X[:, 2]) * 2 + rng.randn(n_train + n_test) * 0.3
y = (signal > np.median(signal)).astype(float)
X_train, X_test = X[:n_train], X[n_train:]
y_train, y_test = y[:n_train], y[n_train:]
clf = HyperOptGradientBoostedClassifier(
n_estimators=n_trees, learning_rate=0.1, max_depth=6,
n_bins=255, random_state=seed,
)
clf.fit(X_train, y_train)
# Bin test data
X_test_binned = clf._transform_to_bins(X_test)
rows = []
engines = [
("Naive", NaiveEngine(clf.trees_)),
("Flat Tree", FlatTreeEngine(clf.trees_, clf.n_bins)),
("Batched SIMD", BatchedSIMDEngine(clf.trees_, clf.n_bins)),
("QuickScorer", QuickScorerEngine(clf.trees_, clf.n_bins)),
]
for name, engine in engines:
# Warmup
_ = engine.predict(X_test_binned[:100])
_, elapsed = timer(lambda: engine.predict(X_test_binned))
throughput = n_test / elapsed
rows.append([name, f"{elapsed*1e3:.1f}ms", f"{throughput:,.0f} samples/s"])
# sklearn predict for reference
_, elapsed = timer(lambda: clf.predict_proba(X_test))
throughput = n_test / elapsed
rows.append(["sklearn predict_proba", f"{elapsed*1e3:.1f}ms", f"{throughput:,.0f} samples/s"])
print()
print_table(["Engine", "Latency", "Throughput"], rows)
# =============================================================================
# MAIN
# =============================================================================
if __name__ == "__main__":
print()
print("╔══════════════════════════════════════════════════════════════════════╗")
print("β•‘ HyperOpt-GBT β€” Quick Benchmark Suite β•‘")
print("╠══════════════════════════════════════════════════════════════════════╣")
print(f"β•‘ Rust backend: {'AVAILABLE' if HAS_RUST else 'not found (pip install maturin && cd rust_gbt && maturin develop --release)':55s} β•‘")
print(f"β•‘ XGBoost: {'AVAILABLE' if xgb else 'not installed':55s} β•‘")
print(f"β•‘ LightGBM: {'AVAILABLE' if lgb else 'not installed':55s} β•‘")
print(f"β•‘ CatBoost: {'AVAILABLE' if cb else 'not installed':55s} β•‘")
print("β•šβ•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•β•")
print()
benchmark_classification()
benchmark_goss_ablation()
benchmark_quantile_sketch()
benchmark_regression()
benchmark_inference_engines()
print("=" * 72)
print("All benchmarks complete.")
print("=" * 72)