gravelcompbio commited on
Commit
18dd4e9
·
verified ·
1 Parent(s): f6a043a

Update claspp_forward.py

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Files changed (1) hide show
  1. claspp_forward.py +5 -5
claspp_forward.py CHANGED
@@ -236,12 +236,12 @@ def predict(input_batches):
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  # print(torch.tensor([tokenizer(batches)['input_ids']]).cuda().shape)
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  # print(torch.tensor([tokenizer(batches)['attention_mask']]).cuda()["logits"][0].shape)
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  #print(torch.tensor([tokenizer(batches)['input_ids']]).cuda().squeeze().shape)
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- print(tokenizer(batches)['input_ids'])
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- print(torch.tensor([tokenizer(batches)['input_ids']]).squeeze().cuda())
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  pred=(sig(model(torch.tensor([tokenizer(batches)['input_ids']]).squeeze().cuda(),torch.tensor([tokenizer(batches)['attention_mask']]).squeeze().cuda())["logits"]).tolist())
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  #print(len(pred[0]))
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  for p in pred:
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- print(p)
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  outputpreds.append(p)
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  return outputpreds
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@@ -392,8 +392,8 @@ def main():
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  continue
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  temp.append(pep.replace("-", "<pad>"))
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  input_batches.append(temp)
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- print(listofpeps)
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- print(input_batches)
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  pred=predict(input_batches=input_batches)
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  write_output(pred,listofpeps,file_output)
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  # print(torch.tensor([tokenizer(batches)['input_ids']]).cuda().shape)
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  # print(torch.tensor([tokenizer(batches)['attention_mask']]).cuda()["logits"][0].shape)
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  #print(torch.tensor([tokenizer(batches)['input_ids']]).cuda().squeeze().shape)
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+ # print(tokenizer(batches)['input_ids'])
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+ # print(torch.tensor([tokenizer(batches)['input_ids']]).squeeze().cuda())
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  pred=(sig(model(torch.tensor([tokenizer(batches)['input_ids']]).squeeze().cuda(),torch.tensor([tokenizer(batches)['attention_mask']]).squeeze().cuda())["logits"]).tolist())
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  #print(len(pred[0]))
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  for p in pred:
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+ # print(p)
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  outputpreds.append(p)
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  return outputpreds
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  continue
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  temp.append(pep.replace("-", "<pad>"))
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  input_batches.append(temp)
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+ # print(listofpeps)
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+ # print(input_batches)
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  pred=predict(input_batches=input_batches)
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  write_output(pred,listofpeps,file_output)
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