pyment-public / pyment

Commit History

Working on preprocess and predict container
4f9da36

estenhl commited on

Finished manual tutorial
b42b662

estenhl commited on

Removed debug prints
2d0f971

estenhl commited on

Working on setting up automatic weight downloading
66269ec

estenhl commited on

Small changes to BIDS scripts
feeef85

Esten Leonardsen commited on

Finished first version of scripts necessary to finetune models
55880f9

Esten Leonardsen commited on

Finished functionality for predicting via python
539bc34

Esten Leonardsen commited on

Working on docker containers
44facea

estenhl commited on

Cleaned repo for new setup
9ce6256

estenhl commited on

move the argumentparser and execution into a function main()
c6271a3

RDoerfel commited on

Move the script to predict into a new module cli within the package
ae0a967

RDoerfel commited on

Tried moving data folder (although I don't want to)
211958d

estenhl commited on

Minor modification to data import
cc8534e

estenhl commited on

Tried to add data folder to packaging
0241023

estenhl commited on

Updated docker containers, small linting fixes, fixed bug with weight repository and directory
01b2465

estenhl commited on

Added notebook for finetuning brain age model
3e26b22

estenhl commited on

Finished READMEs for now
994c4b9

estenhl commited on

More tests and comments, modified README
b1d2acf

estenhl commited on

More documentation
d4793b5

estenhl commited on

Added unit tests for the weight repository
a025440

estenhl commited on

Added a notebook for running SFCN for binary classification
280d3f5

estenhl commited on

Created first docker container
323bfbd

estenhl commited on

Finished models, pre/postprocessing and example from paper 1
f93239b

estenhl commited on

Clean start for new version
e51a245

estenhl commited on

Updated unit tests
352be1b

estenhl commited on

Added contrast augmentation
bb5bc5b

estenhl commited on

Bugfixes in augmentations
86c7344

estenhl commited on

Minor bugfixes
2a0eaa9

estenhl commited on

Added crop augmentation
2bcb63c

estenhl commited on

Added more augmentations
ef9e966

estenhl commited on

Added multisample dataset for datasets with multiple session per subject
738056c

estenhl commited on

Bugfixes
abaa1d2

estenhl commited on

Added noise to augmenter
fe82da2

estenhl commited on

More performance tests for augmentations
bba117f

estenhl commited on

Added multiple augmentations and started on performance tests
c3946d9

estenhl commited on

Started working on additional augmentation functionality
cfdb958

estenhl commited on

Added code for nested crossvalidation
045810a

estenhl commited on

Finished top level script for crossvalidation and implemented tf dataset in fit_model
ba0f6ac

estenhl commited on

Refactored and added some new top-level scripts
eebf064

estenhl commited on

Finished VGG11, added sliced metrics
6901950

estenhl commited on

Finished VGG11 code, added script for learning rate sweep
2c22163

estenhl commited on

Fixed restrict_range for regression models
fb67ebb

estenhl commited on

Merge pull request #4 from estenhl/transformers
2cd1063

estenhl commited on

Finished 3D ViT
e6772ac

estenhl commited on

Added onehot encoding to categorical labels
fbf919f

estenhl commited on

Finished demo-code for Vision Transformer
17a7072

estenhl commited on

Added functionality which is necessary for training domain-adaptive models
ae09326

estenhl commited on

Minor changes to domain-adaptive models
9749281

estenhl commited on

Finished infrastructure for training domain-adaptive SFCNs
067d7b8

estenhl commited on

Changed setup for encoding variables in multilabel dataset, changed naming in binary labels
cbbf10a

estenhl commited on